MELO3C022989 (gene) Melon (DHL92) v4

Overview
NameMELO3C022989
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPathogen induced 4 protein
Locationchr05: 5555921 .. 5556501 (+)
RNA-Seq ExpressionMELO3C022989
SyntenyMELO3C022989
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAACAAAAAAAGAAAAAGGCACAAAAATGTCTCGAAAGTATTTGGTTATTCTTCTTCTCTGTGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTTACTCCCTCCACCACCGTCCCTTCCGCAGTCGGGACATCGTTTTTCAGACTAATCATACCCAGGATTATCAAGAAACCTTTTCCCAAAAAATCTCCCAAATTCCCAAAAATCAAAGTGCCACCGCCACCGCCATTGCGACGGGTACGCATATGGAGTCCACCTTCTTCGAACTAAATGCCTTAAGTGTGTTCAATAGACCAGCACCACCATAAACCACCATAACTATGGTGTGTGTTTCTCTCAAGCTTATGATGGATACTTTTCGGAAACTTATTTTTATGAAATAATGTGGTTTTTTTCTATGTACTTTTTATAAAAAATTTAATAATGTTTTAAGAATTATTATTGGCAATACATAAATGTTGTTCGAGTTCTACATTAGATATATGTACTTTATAACTATTTTGTAATTTTTAGAGCATATAATAAAATATTTGTCTCTTCTCTTCCCT

mRNA sequence

AGAACAAAAAAAGAAAAAGGCACAAAAATGTCTCGAAAGTATTTGGTTATTCTTCTTCTCTGTGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTTACTCCCTCCACCACCGTCCCTTCCGCAGTCGGGACATCGTTTTTCAGACTAATCATACCCAGGATTATCAAGAAACCTTTTCCCAAAAAATCTCCCAAATTCCCAAAAATCAAAGTGCCACCGCCACCGCCATTGCGACGGGTACGCATATGGAGTCCACCTTCTTCGAACTAAATGCCTTAAGTGTGTTCAATAGACCAGCACCACCATAAACCACCATAACTATGGTGTGTGTTTCTCTCAAGCTTATGATGGATACTTTTCGGAAACTTATTTTTATGAAATAATGTGGTTTTTTTCTATGTACTTTTTATAAAAAATTTAATAATGTTTTAAGAATTATTATTGGCAATACATAAATGTTGTTCGAGTTCTACATTAGATATATGTACTTTATAACTATTTTGTAATTTTTAGAGCATATAATAAAATATTTGTCTCTTCTCTTCCCT

Coding sequence (CDS)

ATGTCTCGAAAGTATTTGGTTATTCTTCTTCTCTGTGTGATTCTTCTTAGCACCCAAGTTGTTGCTCGACCTTATTACCTGTCGGAGAACCACCACAAACTTACTCCCTCCACCACCGTCCCTTCCGCAGTCGGGACATCGTTTTTCAGACTAATCATACCCAGGATTATCAAGAAACCTTTTCCCAAAAAATCTCCCAAATTCCCAAAAATCAAAGTGCCACCGCCACCGCCATTGCGACGGGTACGCATATGGAGTCCACCTTCTTCGAACTAA

Protein sequence

MSRKYLVILLLCVILLSTQVVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKKPFPKKSPKFPKIKVPPPPPLRRVRIWSPPSSN
Homology
BLAST of MELO3C022989 vs. NCBI nr
Match: KGN61604.1 (hypothetical protein Csa_006693 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.4e-19
Identity = 66/99 (66.67%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 1  MSRKYLVILLLC-VILLSTQVVARPYYLSENHHKLTPSTTVPSA---VGTSFFRLIIPRI 60
          MS+KYLVILLL  VILLSTQVVARPYYLSENHHKLTPS TV +A   V   FF+    + 
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHFHKK 60

Query: 61 IKKPFPKKSPKFPKIK----VPPPPPLRRVRIWSPPSSN 92
            K  PKKSPKFPK+K     PPPPP R VR W PPSSN
Sbjct: 61 SPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

BLAST of MELO3C022989 vs. NCBI nr
Match: ABF19725.1 (pathogen induced 4 protein [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0

Query: 1  MSRKYLVILLLCVILLSTQVVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKKP 60
          MS K+LVILLL VILLSTQV+ARPYYLSENHH+LTPS TVPSAVG S  +L  P  +KK 
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKL--PPWLKKI 60

Query: 61 FPKKSPKFP-KIKVPPPPPLRRVRIWSPPSSN 92
          FPKK PK    +     PP RR++   PPSSN
Sbjct: 61 FPKKPPKSTCHLHRRRDPPRRRLK---PPSSN 87

BLAST of MELO3C022989 vs. NCBI nr
Match: XP_016902583.1 (PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 6.8e-14
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MSRKYLVILLLCVILL-STQVVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKK 60
          MS K+LVILLL VILL STQV+AR YYL ENHH+LTPS TVPSAVG S  +L  P  +KK
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKL--PPWLKK 60

Query: 61 PFPKKSPKFPKIKVPPPP 78
           FPKK P+ PKIK PPPP
Sbjct: 61 NFPKK-PRLPKIKSPPPP 75

BLAST of MELO3C022989 vs. NCBI nr
Match: TYK15521.1 (Cell division protein ftsH, putative isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 20  VVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKKPFPKKSPKFPKIKVPPPP 78
           V+AR YYL ENHH+LTPS TVPSAVG S  +L  P  +KK FPKK P+ PKIK PPPP
Sbjct: 256 VIARTYYLPENHHRLTPSATVPSAVGKSLPKL--PPWLKKNFPKK-PRLPKIKSPPPP 310

BLAST of MELO3C022989 vs. ExPASy TrEMBL
Match: A0A0A0LKM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-19
Identity = 66/99 (66.67%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 1  MSRKYLVILLLC-VILLSTQVVARPYYLSENHHKLTPSTTVPSA---VGTSFFRLIIPRI 60
          MS+KYLVILLL  VILLSTQVVARPYYLSENHHKLTPS TV +A   V   FF+    + 
Sbjct: 1  MSQKYLVILLLLGVILLSTQVVARPYYLSENHHKLTPSATVSAAYWKVVIPFFKKHFHKK 60

Query: 61 IKKPFPKKSPKFPKIK----VPPPPPLRRVRIWSPPSSN 92
            K  PKKSPKFPK+K     PPPPP R VR W PPSSN
Sbjct: 61 SPKKSPKKSPKFPKVKSPPPSPPPPPPRPVRSWRPPSSN 99

BLAST of MELO3C022989 vs. ExPASy TrEMBL
Match: A0MCW3 (Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.7e-15
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0

Query: 1  MSRKYLVILLLCVILLSTQVVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKKP 60
          MS K+LVILLL VILLSTQV+ARPYYLSENHH+LTPS TVPSAVG S  +L  P  +KK 
Sbjct: 1  MSHKHLVILLLGVILLSTQVIARPYYLSENHHRLTPSATVPSAVGESLQKL--PPWLKKI 60

Query: 61 FPKKSPKFP-KIKVPPPPPLRRVRIWSPPSSN 92
          FPKK PK    +     PP RR++   PPSSN
Sbjct: 61 FPKKPPKSTCHLHRRRDPPRRRLK---PPSSN 87

BLAST of MELO3C022989 vs. ExPASy TrEMBL
Match: A0A1S4E2Y7 (uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.3e-14
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0

Query: 1  MSRKYLVILLLCVILL-STQVVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKK 60
          MS K+LVILLL VILL STQV+AR YYL ENHH+LTPS TVPSAVG S  +L  P  +KK
Sbjct: 1  MSHKHLVILLLGVILLSSTQVIARTYYLPENHHRLTPSATVPSAVGKSLPKL--PPWLKK 60

Query: 61 PFPKKSPKFPKIKVPPPP 78
           FPKK P+ PKIK PPPP
Sbjct: 61 NFPKK-PRLPKIKSPPPP 75

BLAST of MELO3C022989 vs. ExPASy TrEMBL
Match: A0A5D3CUG0 (Cell division protein ftsH, putative isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00110 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 20  VVARPYYLSENHHKLTPSTTVPSAVGTSFFRLIIPRIIKKPFPKKSPKFPKIKVPPPP 78
           V+AR YYL ENHH+LTPS TVPSAVG S  +L  P  +KK FPKK P+ PKIK PPPP
Sbjct: 256 VIARTYYLPENHHRLTPSATVPSAVGKSLPKL--PPWLKKNFPKK-PRLPKIKSPPPP 310

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN61604.15.4e-1966.67hypothetical protein Csa_006693 [Cucumis sativus][more]
ABF19725.11.8e-1464.13pathogen induced 4 protein [Cucumis sativus][more]
XP_016902583.16.8e-1470.51PREDICTED: uncharacterized protein LOC107991740 [Cucumis melo][more]
TYK15521.11.1e-0867.24Cell division protein ftsH, putative isoform 3 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LKM82.6e-1966.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G176180 PE=4 SV=1[more]
A0MCW38.7e-1564.13Pathogen induced 4 protein OS=Cucumis sativus OX=3659 GN=pi4 PE=2 SV=1[more]
A0A1S4E2Y73.3e-1470.51uncharacterized protein LOC107991740 OS=Cucumis melo OX=3656 GN=LOC107991740 PE=... [more]
A0A5D3CUG05.4e-0967.24Cell division protein ftsH, putative isoform 3 OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022989.1MELO3C022989.1mRNA