MELO3C020548 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020548
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	60s ribosomal protein l2
Location	chr12: 1905750 .. 1905982 (-)
RNA-Seq Expression	MELO3C020548
Synteny	MELO3C020548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAACGGGGCAAGGCCCATGAAGCTCCGGCAGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGG

mRNA sequence

TGACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAACGGGGCAAGGCCCATGAAGCTCCGGCAGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGG

Coding sequence (CDS)

ACAATTGAGAGGTTCTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAACGGGGCAAGGCCCATGAAGCTCCGGCAGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGG

Protein sequence

TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRMPMGAGFFEKARADSETW

Homology

[Close]

BLAST of MELO3C020548 vs. NCBI nr
Match: KAA0032895.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAH+ PAEREGLPGRM
Sbjct: 50  TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHKVPAEREGLPGRM 109

Query: 61  PMGAGFFEKARADSETW 78
           PMGAGFFEKARADSETW
Sbjct: 110 PMGAGFFEKARADSETW 126

[Close]

BLAST of MELO3C020548 vs. NCBI nr
Match: KAA0031822.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-28
Identity = 64/76 (84.21%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
          TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAH+AP EREGL  RM
Sbjct: 2  TIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARM 61

Query: 61 PMGAGFFEKARADSET 77
           MGAG FEKA ADSET
Sbjct: 62 LMGAGLFEKAPADSET 77

[Close]

BLAST of MELO3C020548 vs. NCBI nr
Match: KAA0051145.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIERFSLSIPSHTGR+VKWQGH PVWL+AEYS H NK+LIGE GK  EA AEREGLPG M
Sbjct: 33  TIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYM 92

Query: 61  PMGAGFFEKARAD 74
           PMGAGFFEKARAD
Sbjct: 93  PMGAGFFEKARAD 105

[Close]

BLAST of MELO3C020548 vs. NCBI nr
Match: XP_030519441.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia argentea])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 55/75 (73.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 4   RFSLSIPSHTGREVKWQGHTPVWLLAEYS-SHPNKDLIGERGKAHEAPAEREGLPGRMPM 63
           + SLSIPSHTGREVKWQG       +  S +H    L GERG AHEAPAEREGLPGRMPM
Sbjct: 156 KLSLSIPSHTGREVKWQGKAIRPFGSSRSIAHIQXHLSGERGNAHEAPAEREGLPGRMPM 215

Query: 64  GAGFFEKARADSETW 78
           GAGFFEKARADSETW
Sbjct: 216 GAGFFEKARADSETW 230

[Close]

BLAST of MELO3C020548 vs. NCBI nr
Match: OIT06415.1 (60s ribosomal protein l2, mitochondrial [Nicotiana attenuata])

HSP 1 Score: 103.6 bits (257), Expect = 7.8e-19
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIER SLSIPSHTG+E+                  +K LIGERG AHEAPAEREGLPGRM
Sbjct: 208 TIERLSLSIPSHTGKEL-----------------TSKHLIGERGNAHEAPAEREGLPGRM 267

Query: 61  PMGAGFFEKARADSETW 78
           PMGAGFFEKARADSETW
Sbjct: 268 PMGAGFFEKARADSETW 267

[Close]

BLAST of MELO3C020548 vs. ExPASy TrEMBL
Match: A0A5A7SUL2 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00880 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.1e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAH+ PAEREGLPGRM
Sbjct: 50  TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHKVPAEREGLPGRM 109

Query: 61  PMGAGFFEKARADSETW 78
           PMGAGFFEKARADSETW
Sbjct: 110 PMGAGFFEKARADSETW 126

[Close]

BLAST of MELO3C020548 vs. ExPASy TrEMBL
Match: A0A5D3BBV8 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001170 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 64/76 (84.21%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
          TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAH+AP EREGL  RM
Sbjct: 2  TIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARM 61

Query: 61 PMGAGFFEKARADSET 77
           MGAG FEKA ADSET
Sbjct: 62 LMGAGLFEKAPADSET 77

[Close]

BLAST of MELO3C020548 vs. ExPASy TrEMBL
Match: A0A5D3BXG0 (Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001340 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIERFSLSIPSHTGR+VKWQGH PVWL+AEYS H NK+LIGE GK  EA AEREGLPG M
Sbjct: 33  TIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGYM 92

Query: 61  PMGAGFFEKARAD 74
           PMGAGFFEKARAD
Sbjct: 93  PMGAGFFEKARAD 105

[Close]

BLAST of MELO3C020548 vs. ExPASy TrEMBL
Match: A0A1J6J9A5 (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_1 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIER SLSIPSHTG+E+                  +K LIGERG AHEAPAEREGLPGRM
Sbjct: 208 TIERLSLSIPSHTGKEL-----------------TSKHLIGERGNAHEAPAEREGLPGRM 267

Query: 61  PMGAGFFEKARADSETW 78
           PMGAGFFEKARADSETW
Sbjct: 268 PMGAGFFEKARADSETW 267

[Close]

BLAST of MELO3C020548 vs. ExPASy TrEMBL
Match: A0A1J6KG38 (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_3 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 52/77 (67.53%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 1   TIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHEAPAEREGLPGRM 60
           TIER SLSIPSHTG+E+                  +K LIGERG AHEAPAEREGLPGR+
Sbjct: 209 TIERLSLSIPSHTGKEL-----------------TSKHLIGERGNAHEAPAEREGLPGRI 268

Query: 61  PMGAGFFEKARADSETW 78
           PMGAGFFEKARADSETW
Sbjct: 269 PMGAGFFEKARADSETW 268

[Close]

BLAST of MELO3C020548 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-16
Identity = 36/39 (92.31%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 39  LIGERGKAHEAPAEREGLPGRMPMGAGFFEKARADSETW 78
           LIGERG  HEAP EREGLPGRMPMGAGFFEKARADSETW
Sbjct: 331 LIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSETW 369

The following BLAST results are available for this feature:

BLAST of MELO3C020548 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C020548 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032895.1	1.7e-37	97.40	60s ribosomal protein l2 [Cucumis melo var. makuwa]	[more]
KAA0031822.1	5.4e-28	84.21	60s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal pr...	[more]
KAA0051145.1	2.7e-27	84.93	ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2...	[more]
XP_030519441.1	1.4e-20	73.33	LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia ar...	[more]
OIT06415.1	7.8e-19	68.83	60s ribosomal protein l2, mitochondrial [Nicotiana attenuata]	[more]

BLAST of MELO3C020548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUL2	8.1e-38	97.40	60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BBV8	2.6e-28	84.21	60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BXG0	1.3e-27	84.93	Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1J6J9A5	3.8e-19	68.83	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]
A0A1J6KG38	1.1e-18	67.53	60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_...	[more]

BLAST of MELO3C020548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07715.1	8.6e-16	92.31	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020548.1	MELO3C020548.1	mRNA