MELO3C020262.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020262.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr06: 15133048 .. 15133285 (-)
RNA-Seq ExpressionMELO3C020262.jh1
SyntenyMELO3C020262.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTTCCTCTTCTTTGGAAATAACTCAACAACAATTAAAAGGGCATCGACAACAGATTGTAGCAATTGAGGCTACCATAGGGACGACATCCAACACTGTATCGATGTATTCTGAGAATCTGGTAACCTCATTCTCTACTTTATCCTCTTCCTATGTGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAGTCAGGTATACCTAAGCCCTTTAGTCTCATTAGTTTTGAAG

mRNA sequence

ATGCAAGCTTCCTCTTCTTTGGAAATAACTCAACAACAATTAAAAGGGCATCGACAACAGATTGTAGCAATTGAGGCTACCATAGGGACGACATCCAACACTGTATCGATGTATTCTGAGAATCTGGTAACCTCATTCTCTACTTTATCCTCTTCCTATGTGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAGTCAGGTATACCTAAGCCCTTTAGTCTCATTAGTTTTGAAG

Coding sequence (CDS)

ATGCAAGCTTCCTCTTCTTTGGAAATAACTCAACAACAATTAAAAGGGCATCGACAACAGATTGTAGCAATTGAGGCTACCATAGGGACGACATCCAACACTGTATCGATGTATTCTGAGAATCTGGTAACCTCATTCTCTACTTTATCCTCTTCCTATGTGAATGCTAGTCCAACCACACTTGGAGCTATTGTCCAGTCAGGTATACCTAAGCCCTTTAGTCTCATTAGTTTTGAA

Protein sequence

MQASSSLEITQQQLKGHRQQIVAIEATIGTTSNTVSMYSENLVTSFSTLSSSYVNASPTTLGAIVQSGIPKPFSLISFE
Homology
BLAST of MELO3C020262.jh1 vs. NCBI nr
Match: KAA0041480.1 (kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.38e-21
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1   MQASS-SLEITQQQLKGHRQQIVAIEATIGTTSNT-VSMYSENLVTSFSTLSSSYV--NA 60
           MQASS S  I+QQQLKG RQQI AIE+T+GTTS+T VSMYS+N +TSF TLSSSYV  NA
Sbjct: 95  MQASSFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENA 154

Query: 61  SPTTLGAIVQSGIPKPFSLISFE 79
           SPTTL AIVQSGIP+ FSLI+ +
Sbjct: 155 SPTTLRAIVQSGIPQSFSLINID 177

BLAST of MELO3C020262.jh1 vs. NCBI nr
Match: TYK24354.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.66e-20
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1   MQASS-SLEITQQQLKGHRQQIVAIEATIGTTSNT-VSMYSENLVTSFSTLSSSYV--NA 60
           MQASS S  I+QQQLKG RQQI AIE+T+GTTS+T VSMYS+N +TSF TLSSSYV  NA
Sbjct: 95  MQASSFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENA 154

Query: 61  SPTTLGAIVQSGIPKPFSLISFE 79
           SPTTL AIVQSGIP+ FSLI+ +
Sbjct: 155 SPTTLRAIVQSGIPQSFSLINID 177

BLAST of MELO3C020262.jh1 vs. NCBI nr
Match: KAA0053148.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK01552.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.03e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 16  GHRQQIVAIEATIGTTSNTVSMYSENLVTSFSTLSSSYVNASPTTLGAIVQS 67
           GHRQQIVAIEATIGTTSNTVSMY ENLVTSFSTLSSSYVNAS TTLGAIVQS
Sbjct: 96  GHRQQIVAIEATIGTTSNTVSMYFENLVTSFSTLSSSYVNASLTTLGAIVQS 147

BLAST of MELO3C020262.jh1 vs. NCBI nr
Match: KAA0050981.1 (kirola-like [Cucumis melo var. makuwa] >TYK10327.1 kirola-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 9.24e-17
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 4   SSSLEITQQQLKGHRQQIVAIEATIGTTSNTVS-MYSENLVTSFSTLSSSYV--NASPTT 63
           +SS  ITQQQL+  RQQI AIEAT+GTTS T   MY ENLVTSF TLSS YV  NASPTT
Sbjct: 120 TSSSGITQQQLEELRQQIAAIEATLGTTSKTPRPMYIENLVTSFPTLSSFYVSENASPTT 179

Query: 64  LGAIVQSGIPKPFSLISFE 79
           LGA VQS I + FSLIS +
Sbjct: 180 LGASVQSDIAQSFSLISID 198

BLAST of MELO3C020262.jh1 vs. NCBI nr
Match: KAA0065437.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.08e-16
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 14  LKGHRQQIVAIEATIGTTSNTVSMYSENLVTSFSTLSSSYVNASPTTLGAIVQSGIPKPF 73
           L G +QQI AI AT+ TTSNTV MY +NLVTSF TLSSS+VNASPTTL  IVQS IP+PF
Sbjct: 54  LDGLQQQIAAIVATLETTSNTVPMYYKNLVTSFPTLSSSHVNASPTTLEPIVQSCIPQPF 113

Query: 74  SLISFE 79
           SLIS +
Sbjct: 114 SLISID 119

BLAST of MELO3C020262.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TDW1 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00630 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.15e-21
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1   MQASS-SLEITQQQLKGHRQQIVAIEATIGTTSNT-VSMYSENLVTSFSTLSSSYV--NA 60
           MQASS S  I+QQQLKG RQQI AIE+T+GTTS+T VSMYS+N +TSF TLSSSYV  NA
Sbjct: 95  MQASSFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENA 154

Query: 61  SPTTLGAIVQSGIPKPFSLISFE 79
           SPTTL AIVQSGIP+ FSLI+ +
Sbjct: 155 SPTTLRAIVQSGIPQSFSLINID 177

BLAST of MELO3C020262.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DL79 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001340 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.02e-21
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1   MQASS-SLEITQQQLKGHRQQIVAIEATIGTTSNT-VSMYSENLVTSFSTLSSSYV--NA 60
           MQASS S  I+QQQLKG RQQI AIE+T+GTTS+T VSMYS+N +TSF TLSSSYV  NA
Sbjct: 95  MQASSFSSGISQQQLKGLRQQIAAIESTLGTTSDTPVSMYSQNPITSFPTLSSSYVSENA 154

Query: 61  SPTTLGAIVQSGIPKPFSLISFE 79
           SPTTL AIVQSGIP+ FSLI+ +
Sbjct: 155 SPTTLRAIVQSGIPQSFSLINID 177

BLAST of MELO3C020262.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BRY6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001230 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.47e-18
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 16  GHRQQIVAIEATIGTTSNTVSMYSENLVTSFSTLSSSYVNASPTTLGAIVQS 67
           GHRQQIVAIEATIGTTSNTVSMY ENLVTSFSTLSSSYVNAS TTLGAIVQS
Sbjct: 96  GHRQQIVAIEATIGTTSNTVSMYFENLVTSFSTLSSSYVNASLTTLGAIVQS 147

BLAST of MELO3C020262.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CEE0 (Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004830 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.47e-17
Identity = 55/79 (69.62%), Postives = 60/79 (75.95%), Query Frame = 0

Query: 4   SSSLEITQQQLKGHRQQIVAIEATIGTTSNTVS-MYSENLVTSFSTLSSSYV--NASPTT 63
           +SS  ITQQQL+  RQQI AIEAT+GTTS T   MY ENLVTSF TLSS YV  NASPTT
Sbjct: 120 TSSSGITQQQLEELRQQIAAIEATLGTTSKTPRPMYIENLVTSFPTLSSFYVSENASPTT 179

Query: 64  LGAIVQSGIPKPFSLISFE 79
           LGA VQS I + FSLIS +
Sbjct: 180 LGASVQSDIAQSFSLISID 198

BLAST of MELO3C020262.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VEC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001180 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.01e-16
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 14  LKGHRQQIVAIEATIGTTSNTVSMYSENLVTSFSTLSSSYVNASPTTLGAIVQSGIPKPF 73
           L G +QQI AI AT+ TTSNTV MY +NLVTSF TLSSS+VNASPTTL  IVQS IP+PF
Sbjct: 54  LDGLQQQIAAIVATLETTSNTVPMYYKNLVTSFPTLSSSHVNASPTTLEPIVQSCIPQPF 113

Query: 74  SLISFE 79
           SLIS +
Sbjct: 114 SLISID 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0041480.12.38e-2173.49kirola-like [Cucumis melo var. makuwa][more]
TYK24354.11.66e-2073.49transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa][more]
KAA0053148.13.03e-1896.15reverse transcriptase [Cucumis melo var. makuwa] >TYK01552.1 reverse transcripta... [more]
KAA0050981.19.24e-1769.62kirola-like [Cucumis melo var. makuwa] >TYK10327.1 kirola-like [Cucumis melo var... [more]
KAA0065437.12.08e-1672.73reverse transcriptase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TDW11.15e-2173.49Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G00630 PE=4... [more]
A0A5D3DL798.02e-2173.49Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BRY61.47e-1896.15Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
A0A5D3CEE04.47e-1769.62Kirola-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004830 PE... [more]
A0A5A7VEC51.01e-1672.73Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020262.jh1.t1MELO3C020262.jh1.t1mRNA