MELO3C018580.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018580.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPhloem filament protein
Locationchr01: 1281867 .. 1282561 (-)
RNA-Seq ExpressionMELO3C018580.jh1
SyntenyMELO3C018580.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATACCATCAAATATCAACTAAAGATCACAAGAAAATGACACTTGGTATTGGTGGAAGAATTGGTATTGGCTTTGGTCTTCCTGGCTTCAATATATCGATCGGCGGAGGCATTGGTATCGGAGGTAGAAAGGGTGGGTGCAAGAGTCACAATCCTTCGAAAAAATGGATTCAACTTCACAATGTGAAGGCTCCTGATGTTTTAGAAGCTGCTAAGTTTGCAGTGGATGCGTTCAACAAAAAATATGAAAATAATCTTGAGTTTCAATACGTTACGGAAGCTTGGGTTCATGAAGTTAATAACGAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTTCATCGTCTCCTCGAGTTTCATGCTGTCGTGATTGAAAAAACCGTTGATCATAAGAAGATTTGGATTCTTGTGTCTTTCGAACGAATCTTCGACTAAAAGAGAAAAGTTATATATATGTATAATCAAAAGTTTATACTTATATATATGTGTGAGATCTACACAATAATAAATCTTATATGATACTGTAGTATGTCGATCTCTACTTTCTTTCACTACTATATGTATTATGAAATAATCGAGACCGAACTAAGTTTTTAGTCCTGAGCCTATATTTTGTGTTTTAGTTTTCATTTTTGGTTTGTTGCACTTTTAAAGTTTGATCTAGACTAATGTTGCAGTTTTGTGTTTG

mRNA sequence

TCAATACCATCAAATATCAACTAAAGATCACAAGAAAATGACACTTGGTATTGGTGGAAGAATTGGTATTGGCTTTGGTCTTCCTGGCTTCAATATATCGATCGGCGGAGGCATTGGTATCGGAGGTAGAAAGGGTGGGTGCAAGAGTCACAATCCTTCGAAAAAATGGATTCAACTTCACAATGTGAAGGCTCCTGATGTTTTAGAAGCTGCTAAGTTTGCAGTGGATGCGTTCAACAAAAAATATGAAAATAATCTTGAGTTTCAATACGTTACGGAAGCTTGGGTTCATGAAGTTAATAACGAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTTCATCGTCTCCTCGAGTTTCATGCTGTCGTGATTGAAAAAACCGTTGATCATAAGAAGATTTGGATTCTTGTGTCTTTCGAACGAATCTTCGACTAAAAGAGAAAAGTTATATATATGTATAATCAAAAGTTTATACTTATATATATGTGTGAGATCTACACAATAATAAATCTTATATGATACTGTAGTATGTCGATCTCTACTTTCTTTCACTACTATATGTATTATGAAATAATCGAGACCGAACTAAGTTTTTAGTCCTGAGCCTATATTTTGTGTTTTAGTTTTCATTTTTGGTTTGTTGCACTTTTAAAGTTTGATCTAGACTAATGTTGCAGTTTTGTGTTTG

Coding sequence (CDS)

ATGACACTTGGTATTGGTGGAAGAATTGGTATTGGCTTTGGTCTTCCTGGCTTCAATATATCGATCGGCGGAGGCATTGGTATCGGAGGTAGAAAGGGTGGGTGCAAGAGTCACAATCCTTCGAAAAAATGGATTCAACTTCACAATGTGAAGGCTCCTGATGTTTTAGAAGCTGCTAAGTTTGCAGTGGATGCGTTCAACAAAAAATATGAAAATAATCTTGAGTTTCAATACGTTACGGAAGCTTGGGTTCATGAAGTTAATAACGAAAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTTCATCGTCTCCTCGAGTTTCATGCTGTCGTGATTGAAAAAACCGTTGATCATAAGAAGATTTGGATTCTTGTGTCTTTCGAACGAATCTTCGACTAA

Protein sequence

MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAKFAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDHKKIWILVSFERIFD
Homology
BLAST of MELO3C018580.jh1 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (689), Expect = 4.35e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120
           FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120

Query: 121 KKIWILVSFERIFD 134
           KKIWILVSFERIFD
Sbjct: 121 KKIWILVSFERIFD 134

BLAST of MELO3C018580.jh1 vs. NCBI nr
Match: TYK06875.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 4.38e-48
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGG IGIG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120

Query: 121 HKKIWILVSFERIFD 134
               W LVSF +I +
Sbjct: 121 TPPGWNLVSFNQIVE 134

BLAST of MELO3C018580.jh1 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 3.58e-47
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120

Query: 121 HKKIWILVSFERIFD 134
               W LVSF +I +
Sbjct: 121 TPPGWNLVSFNQIVE 134

BLAST of MELO3C018580.jh1 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 4.19e-41
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVL-EAA 60
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V+   A
Sbjct: 1   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 60

Query: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 61  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 120

Query: 121 DHKKIWILVSFERIFD 134
                W L SF +I D
Sbjct: 121 GVPPGWNLFSFTQISD 135

BLAST of MELO3C018580.jh1 vs. NCBI nr
Match: KAE8645826.1 (hypothetical protein Csa_017081 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 5.35e-41
Identity = 83/136 (61.03%), Postives = 97/136 (71.32%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVL-EAA 60
           MT+GIGG IGIG G+PG  +SIGGGIGIG RKGGCKSH+PSKKW Q+ N +A  V+   A
Sbjct: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68

Query: 61  KFAVDAFNKKYENNLEFQYVTEAWVHEV-NNEKEYSIELVAKDCFHRLLEFHAVVIEKTV 120
            FAV AFN+KY N L F  V EAWV  + + +KEYSIELVAKDC +R L FHA+VIE  V
Sbjct: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIE-IV 128

Query: 121 DHKKIWILVSFERIFD 134
                W L SF +I D
Sbjct: 129 GVPPGWNLFSFTQISD 143

BLAST of MELO3C018580.jh1 vs. ExPASy Swiss-Prot
Match: Q84WT8 (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 22  IGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAKFAVDAFNKKYENNLEFQYVTE 81
           +GGG G+G RK              + NV  PDV+  AK+A++  NK+ +  L F  V E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDHKK 123
                V+  K Y +++ AKD   ++  + AVV+EK   H K
Sbjct: 83  GTTQVVSGTK-YDLKIAAKDGGGKIKNYEAVVVEKLWLHSK 109

BLAST of MELO3C018580.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 2.11e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120
           FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120

Query: 121 KKIWILVSFERIFD 134
           KKIWILVSFERIFD
Sbjct: 121 KKIWILVSFERIFD 134

BLAST of MELO3C018580.jh1 vs. ExPASy TrEMBL
Match: E5GCR6 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 2.11e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120
           FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDH 120

Query: 121 KKIWILVSFERIFD 134
           KKIWILVSFERIFD
Sbjct: 121 KKIWILVSFERIFD 134

BLAST of MELO3C018580.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C621 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001790 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 2.12e-48
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGG IGIG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120

Query: 121 HKKIWILVSFERIFD 134
               W LVSF +I +
Sbjct: 121 TPPGWNLVSFNQIVE 134

BLAST of MELO3C018580.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.73e-47
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120

Query: 121 HKKIWILVSFERIFD 134
               W LVSF +I +
Sbjct: 121 TPPGWNLVSFNQIVE 134

BLAST of MELO3C018580.jh1 vs. ExPASy TrEMBL
Match: E5GCR5 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.73e-47
Identity = 86/135 (63.70%), Postives = 102/135 (75.56%), Query Frame = 0

Query: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVD 120
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE    
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE-ICG 120

Query: 121 HKKIWILVSFERIFD 134
               W LVSF +I +
Sbjct: 121 TPPGWNLVSFNQIVE 134

BLAST of MELO3C018580.jh1 vs. TAIR 10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.4e-07
Identity = 34/101 (33.66%), Postives = 51/101 (50.50%), Query Frame = 0

Query: 22  IGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAKFAVDAFNKKYENNLEFQYVTE 81
           +GGG G+G RK              + NV  PDV+  AK+A++  NK+ +  L F  V E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVHEVNNEKEYSIELVAKDCFHRLLEFHAVVIEKTVDHKK 123
                V+  K Y +++ AKD   ++  + AVV+EK   H K
Sbjct: 83  GTTQVVSGTK-YDLKIAAKDGGGKIKNYEAVVVEKLWLHSK 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ADN34264.14.35e-91100.00phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament... [more]
TYK06875.14.38e-4864.44phloem filament protein [Cucumis melo var. makuwa][more]
ADN34263.13.58e-4763.70phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament... [more]
XP_011658840.24.19e-4161.03uncharacterized protein LOC105436098 [Cucumis sativus][more]
KAE8645826.15.35e-4161.03hypothetical protein Csa_017081 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Q84WT81.0e-0533.66Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
A0A5A7SQL42.11e-91100.00Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
E5GCR62.11e-91100.00Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3C6212.12e-4864.44Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SJV31.73e-4763.70Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
E5GCR51.73e-4763.70Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16500.17.4e-0733.66Cystatin/monellin superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.10coord: 39..133
e-value: 1.1E-11
score: 46.7
NoneNo IPR availablePANTHERPTHR47116:SF5PHLOEM FILAMENT PROTEINcoord: 35..132
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 44..130
IPR009994Phloem filament PP1PFAMPF07430PP1coord: 56..129
e-value: 1.5E-12
score: 47.3
IPR027214CystatinPANTHERPTHR47116PHLOEM FILAMENT PROTEINcoord: 35..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018580.jh1.t1MELO3C018580.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity