MELO3C017494 (gene) Melon (DHL92) v4

Overview
NameMELO3C017494
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr02: 22332801 .. 22333152 (-)
RNA-Seq ExpressionMELO3C017494
SyntenyMELO3C017494
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAAGGGAAGGGCTCATTAACAAACCATTTTCCTATTACGATGAACTTGCATATGTGTTTGGATACGATAGGGTGACGGGTCACTTCGTTGAGACATTCGCCGACGTCGGGTCTAACGAGTCTGTCGAGTATGAGAGGTTTGACATGCCTGATGGGAATGAGGAATACAACCAGGGGATTGACATGTCCCAAGAGAATGTATGCGCATCACGACCTTCTCGTGTGTTAGAGGGTAGGATCAGATCAAACAGATCGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGCTTAAAGTTATACATATGACCCTCGAGTGTACGAACGACCAACTCAGGACAATTGTAGAGTAG

mRNA sequence

CGAAAGGGAAGGGCTCATTAACAAACCATTTTCCTATTACGATGAACTTGCATATGTGTTTGGATACGATAGGGTGACGGGTCACTTCGTTGAGACATTCGCCGACGTCGGGTCTAACGAGTCTGTCGAGTATGAGAGGTTTGACATGCCTGATGGGAATGAGGAATACAACCAGGGGATTGACATGTCCCAAGAGAATGTATGCGCATCACGACCTTCTCGTGTGTTAGAGGGTAGGATCAGATCAAACAGATCGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGCTTAAAGTTATACATATGACCCTCGAGTGTACGAACGACCAACTCAGGACAATTGTAGAGTAG

Coding sequence (CDS)

GAAAGGGAAGGGCTCATTAACAAACCATTTTCCTATTACGATGAACTTGCATATGTGTTTGGATACGATAGGGTGACGGGTCACTTCGTTGAGACATTCGCCGACGTCGGGTCTAACGAGTCTGTCGAGTATGAGAGGTTTGACATGCCTGATGGGAATGAGGAATACAACCAGGGGATTGACATGTCCCAAGAGAATGTATGCGCATCACGACCTTCTCGTGTGTTAGAGGGTAGGATCAGATCAAACAGATCGAAGAGGAAGAGGGGAAGCCAGCGAGAGGGCAAGCTTAAAGTTATACATATGACCCTCGAGTGTACGAACGACCAACTCAGGACAATTGTAGAGTAG

Protein sequence

EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGIDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE
Homology
[Close]
BLAST of MELO3C017494 vs. NCBI nr
Match: KAA0058317.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 5.7e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 60
           EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI
Sbjct: 6   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 65

Query: 61  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE
Sbjct: 66  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 121

[Close]
BLAST of MELO3C017494 vs. NCBI nr
Match: TYK09490.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 8.3e-57
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 60
           EREGLINKPFSYYDELAYVFGYDRV GHFVETFADVGSNESVEYERFDMPDGNEEYNQGI
Sbjct: 6   EREGLINKPFSYYDELAYVFGYDRVKGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 65

Query: 61  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           DMSQENVCASRPSRV EGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE
Sbjct: 66  DMSQENVCASRPSRVFEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 121

[Close]
BLAST of MELO3C017494 vs. NCBI nr
Match: KAA0051922.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-35
Identity = 81/117 (69.23%), Postives = 93/117 (79.49%), Query Frame = 0 

Query: 4   GLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQG 63
           GL+NKPF YY+ELAYVFG +RV G FVETF DVGSNE   Y+ FDMPDGNE+    YNQG
Sbjct: 14  GLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFSSVYNQG 73

Query: 64  IDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           IDMSQE+V ASRP   L+GRI S+  K KRG+Q+EG+L+VIHM LECTND LRTI E
Sbjct: 74  IDMSQEDVRASRPFLALKGRIESSELKTKRGNQQEGELEVIHMALECTNDHLRTIAE 130

[Close]
BLAST of MELO3C017494 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.0e-35
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 3   EGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQ 62
           +GL NKPF YYDELAYVFG DR+   FV+TF DVGSN+ VEY+RFDM DGNEE    Y+Q
Sbjct: 33  KGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEFPSMYSQ 92

Query: 63  GIDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           GIDMSQE+V ASRPS   +GRIRS+ SKRKR SQ++G+++VIHM +ECTNDQLRTI E
Sbjct: 93  GIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAE 150

[Close]
BLAST of MELO3C017494 vs. NCBI nr
Match: KAA0066074.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 3   EGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQ 62
           +G++NK F YYDELAYVFG DRV G F ETF DVGSNE V YE FDMPDGNEE    Y+Q
Sbjct: 43  KGVLNKLFPYYDELAYVFGQDRVMGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQ 102

Query: 63  GIDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           GIDMS+++V ASRPSR LEGR+    SKRKRGSQ+EG+++VIHM LECTN+QL TI E
Sbjct: 103 GIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 157

[Close]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match: A0A5A7UUA3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006530 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 60
           EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI
Sbjct: 6   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 65

Query: 61  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE
Sbjct: 66  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 121

[Close]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match: A0A5D3CDT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00900 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0 

Query: 1   EREGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 60
           EREGLINKPFSYYDELAYVFGYDRV GHFVETFADVGSNESVEYERFDMPDGNEEYNQGI
Sbjct: 6   EREGLINKPFSYYDELAYVFGYDRVKGHFVETFADVGSNESVEYERFDMPDGNEEYNQGI 65

Query: 61  DMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           DMSQENVCASRPSRV EGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE
Sbjct: 66  DMSQENVCASRPSRVFEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 121

[Close]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 3   EGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQ 62
           +GL NKPF YYDELAYVFG DR+   FV+TF DVGSN+ VEY+RFDM DGNEE    Y+Q
Sbjct: 33  KGLFNKPFPYYDELAYVFGCDRMMDGFVKTFDDVGSNKPVEYKRFDMLDGNEEFPSMYSQ 92

Query: 63  GIDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           GIDMSQE+V ASRPS   +GRIRS+ SKRKR SQ++G+++VIHM +ECTNDQLRTI E
Sbjct: 93  GIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAE 150

[Close]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match: A0A5D3CLE8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00480 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 81/117 (69.23%), Postives = 93/117 (79.49%), Query Frame = 0 

Query: 4   GLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQG 63
           GL+NKPF YY+ELAYVFG +RV G FVETF DVGSNE   Y+ FDMPDGNE+    YNQG
Sbjct: 14  GLLNKPFPYYNELAYVFGRNRVNGRFVETFVDVGSNEPAGYDGFDMPDGNEQFSSVYNQG 73

Query: 64  IDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           IDMSQE+V ASRP   L+GRI S+  K KRG+Q+EG+L+VIHM LECTND LRTI E
Sbjct: 74  IDMSQEDVRASRPFLALKGRIESSELKTKRGNQQEGELEVIHMALECTNDHLRTIAE 130

[Close]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match: A0A5A7VFJ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold446G00250 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.6e-35
Identity = 82/118 (69.49%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 3   EGLINKPFSYYDELAYVFGYDRVTGHFVETFADVGSNESVEYERFDMPDGNEE----YNQ 62
           +G++NK F YYDELAYVFG DRV G F ETF DVGSNE V YE FDMPDGNEE    Y+Q
Sbjct: 43  KGVLNKLFPYYDELAYVFGQDRVMGRFAETFVDVGSNEPVGYEGFDMPDGNEEFPSVYSQ 102

Query: 63  GIDMSQENVCASRPSRVLEGRIRSNRSKRKRGSQREGKLKVIHMTLECTNDQLRTIVE 117
           GIDMS+++V ASRPSR LEGR+    SKRKRGSQ+EG+++VIHM LECTN+QL TI E
Sbjct: 103 GIDMSKKDVRASRPSRTLEGRV---GSKRKRGSQQEGEIEVIHMALECTNEQLMTIAE 157

The following BLAST results are available for this feature:
BLAST of MELO3C017494 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058317.15.7e-58100.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK09490.18.3e-5798.28retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051922.14.0e-3569.23retrotransposon protein [Cucumis melo var. makuwa] >TYK12240.1 retrotransposon p... [more]
KAA0050190.14.0e-3569.49retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... [more]
KAA0066074.11.2e-3469.49retrotransposon protein [Cucumis melo var. makuwa] >TYJ99823.1 retrotransposon p... [more]
BLAST of MELO3C017494 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUA32.8e-58100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CDT34.0e-5798.28Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4I81.9e-3569.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CLE81.9e-3569.23Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFJ25.6e-3569.49Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO3C017494 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017494.1MELO3C017494.1mRNA