Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA mRNA sequence
ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA Coding sequence (CDS)
ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA Protein sequence
THHTPLGKLNFHRQTNDTHTRTERKRKKETTTTDNMQLVMNLDKISRTSRIVSITTMIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPIQDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN
Homology
BLAST of MELO3C016690 vs. NCBI nr
Match:
KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 223.8 bits (569), Expect = 1.2e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 57 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 116 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI Sbjct: 1 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 60 Query: 117 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN Sbjct: 61 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 119
BLAST of MELO3C016690 vs. NCBI nr
Match:
KAE8649837.1 (hypothetical protein Csa_012364 [Cucumis sativus])
HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 105/149 (70.47%), Postives = 117/149 (78.52%), Query Frame = 0
Query: 39 VMNLDKISRTSR---IVSITTMIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLST 98 ++NL K+SRTSR IV I TMI+AT+SIVIV PMGA+AIPLVGPIAQCIQGCT+SLST Sbjct: 1 MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60 Query: 99 LTPGYCMNICGAEYHPLTNPIQDT---------HQKHHVQVEHHHEHHVHFEHHHEHRHE 158 LTPGYCMN+CGAEY PL N +++T HQ+HHVQVEHHHEHHV EHHHE Sbjct: 61 LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEHHVQVEHHHE---- 120 Query: 159 HHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176 HHVQVEHHHEHHVQVEHH Q HGVN Sbjct: 121 -HHVQVEHHHEHHVQVEHHHGQHHIHGVN 144
BLAST of MELO3C016690 vs. NCBI nr
Match:
KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 55.1 bits (131), Expect = 7.2e-04
Identity = 58/135 (42.96%), Postives = 75/135 (55.56%), Query Frame = 0
Query: 40 MNLDKISRTSRIVSITTMIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTP 99 MN K S R++ + TM+VA I++ LPM AEA +P G ++QCIQGCT+SL+ LT Sbjct: 1 MNSTK-STPRRVLIVVTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTS 60 Query: 100 GYCMNICGAEYHPLTNPIQDTHQKHHVQVEHHHEH-------HVHFEHH-HEHRHEHHHV 159 GYC+ +C AE+HPL+ H HH EH H H H H + H H H H H HV Sbjct: 61 GYCLTLCSAEFHPLS-----AHPHHH---EHDHSHAHVRVDAHAHVDDHGHVHAHVHAHV 120 Query: 160 QVEHHHEHHVQVEHH 166 H + HV H Sbjct: 121 DGHGHLQAHVHAHAH 124
BLAST of MELO3C016690 vs. ExPASy TrEMBL
Match:
A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 5.7e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 57 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 116 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI Sbjct: 1 MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 60 Query: 117 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN Sbjct: 61 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 119
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0064320.1 1.2e-54 100.00 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
KAE8649837.1 3.1e-39 70.47 hypothetical protein Csa_012364 [Cucumis sativus] [more]
KAG6591952.1 7.2e-04 42.96 hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5A7VAR8 5.7e-55 100.00 Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A C A C A C C A C A C C C C C T T G G G T A A A T T G A A T T T C C A T A G G C A A A C T A A C G A C A C A C A C A C A A G G A C C G A G C G A A A A A G G A A G A A A G A G A C A A C G A C G A C C G A C A A C A T G C A A C T T G T C A T G A A T T T A G A T A A A A T T T C A A G A A C A T C T A G A A T C G T T T C C A T C A C G A C C A T G A T T G T T G C T A C T C T T A G C A T T G T C A T T G T C T C T C T T C C G A T G G G G G C A G A A G C T A T C C C G C T C G T C G G T C C G A T C G C C C A A T G C A T C C A A G G G T G T A C A A G A T C A T T G T C A A C C T T A A C T C C T G G T T A T T G C A T G A A T A T T T G T G G A G C G G A G T A T C A C C C T C T A A C A A A C C C T A T A C A G G A T A C T C A T C A A A A G C A T C A T G T T C A A G T C G A A C A T C A T C A T G A G C A T C A T G T T C A T T T C G A A C A T C A T C A T G A A C A T C G T C A T G A A C A T C A T C A T G T T C A A G T C G A A C A T C A T C A T G A G C A T C A T G T T C A A G T T G A A C A T C A T C C T G A G C A A C C T A T T G A T C A T G G T G T T A A T T A A 50 100 150 200 250 300 350 400 450 500 Score = Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 153..175
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 14..31
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..31
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 141..175
Relationships
The following mRNA feature(s) are a part of this gene: