MELO3C016690 (gene) Melon (DHL92) v4

Overview
NameMELO3C016690
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionHistidine-rich glycoprotein-like isoform X2
Locationchr07: 2798371 .. 2798898 (-)
RNA-Seq ExpressionMELO3C016690
SyntenyMELO3C016690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA

mRNA sequence

ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA

Coding sequence (CDS)

ACACACCACACCCCCTTGGGTAAATTGAATTTCCATAGGCAAACTAACGACACACACACAAGGACCGAGCGAAAAAGGAAGAAAGAGACAACGACGACCGACAACATGCAACTTGTCATGAATTTAGATAAAATTTCAAGAACATCTAGAATCGTTTCCATCACGACCATGATTGTTGCTACTCTTAGCATTGTCATTGTCTCTCTTCCGATGGGGGCAGAAGCTATCCCGCTCGTCGGTCCGATCGCCCAATGCATCCAAGGGTGTACAAGATCATTGTCAACCTTAACTCCTGGTTATTGCATGAATATTTGTGGAGCGGAGTATCACCCTCTAACAAACCCTATACAGGATACTCATCAAAAGCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCATTTCGAACATCATCATGAACATCGTCATGAACATCATCATGTTCAAGTCGAACATCATCATGAGCATCATGTTCAAGTTGAACATCATCCTGAGCAACCTATTGATCATGGTGTTAATTAA

Protein sequence

THHTPLGKLNFHRQTNDTHTRTERKRKKETTTTDNMQLVMNLDKISRTSRIVSITTMIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPIQDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN
Homology
BLAST of MELO3C016690 vs. NCBI nr
Match: KAA0064320.1 (histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266.1 histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 57  MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 116
           MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI
Sbjct: 1   MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 60

Query: 117 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176
           QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN
Sbjct: 61  QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 119

BLAST of MELO3C016690 vs. NCBI nr
Match: KAE8649837.1 (hypothetical protein Csa_012364 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-39
Identity = 105/149 (70.47%), Postives = 117/149 (78.52%), Query Frame = 0

Query: 39  VMNLDKISRTSR---IVSITTMIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLST 98
           ++NL K+SRTSR   IV I TMI+AT+SIVIV  PMGA+AIPLVGPIAQCIQGCT+SLST
Sbjct: 1   MINLGKMSRTSRMVTIVPIMTMIIATVSIVIVLFPMGADAIPLVGPIAQCIQGCTKSLST 60

Query: 99  LTPGYCMNICGAEYHPLTNPIQDT---------HQKHHVQVEHHHEHHVHFEHHHEHRHE 158
           LTPGYCMN+CGAEY PL N +++T         HQ+HHVQVEHHHEHHV  EHHHE    
Sbjct: 61  LTPGYCMNLCGAEYSPLANTVKNTALANTVQNIHQEHHVQVEHHHEHHVQVEHHHE---- 120

Query: 159 HHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176
            HHVQVEHHHEHHVQVEHH  Q   HGVN
Sbjct: 121 -HHVQVEHHHEHHVQVEHHHGQHHIHGVN 144

BLAST of MELO3C016690 vs. NCBI nr
Match: KAG6591952.1 (hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024824.1 hypothetical protein SDJN02_13643, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 7.2e-04
Identity = 58/135 (42.96%), Postives = 75/135 (55.56%), Query Frame = 0

Query: 40  MNLDKISRTSRIVSITTMIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTP 99
           MN  K S   R++ + TM+VA   I++  LPM AEA +P  G ++QCIQGCT+SL+ LT 
Sbjct: 1   MNSTK-STPRRVLIVVTMMVAL--IIVGLLPMAAEATVPAGGAVSQCIQGCTKSLAGLTS 60

Query: 100 GYCMNICGAEYHPLTNPIQDTHQKHHVQVEHHHEH-------HVHFEHH-HEHRHEHHHV 159
           GYC+ +C AE+HPL+      H  HH   EH H H       H H + H H H H H HV
Sbjct: 61  GYCLTLCSAEFHPLS-----AHPHHH---EHDHSHAHVRVDAHAHVDDHGHVHAHVHAHV 120

Query: 160 QVEHHHEHHVQVEHH 166
               H + HV    H
Sbjct: 121 DGHGHLQAHVHAHAH 124

BLAST of MELO3C016690 vs. ExPASy TrEMBL
Match: A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.7e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 57  MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 116
           MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI
Sbjct: 1   MIVATLSIVIVSLPMGAEAIPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNPI 60

Query: 117 QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 176
           QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN
Sbjct: 61  QDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHHEHHVQVEHHPEQPIDHGVN 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064320.11.2e-54100.00histidine-rich glycoprotein-like isoform X2 [Cucumis melo var. makuwa] >TYK20266... [more]
KAE8649837.13.1e-3970.47hypothetical protein Csa_012364 [Cucumis sativus][more]
KAG6591952.17.2e-0442.96hypothetical protein SDJN03_14298, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VAR85.7e-55100.00Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016690.1MELO3C016690.1mRNA