MELO3C014880 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014880
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr06: 21186014 .. 21187333 (-)
RNA-Seq Expression	MELO3C014880
Synteny	MELO3C014880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGGTCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTCCAAATCCCACAATAACATCCCAATTTGAAGGACTTCTTCTCTTGTATTGATACTTTTGTTTTCTTTTGGATTAGAGAATTATTCGTTGTGGTGGAGCCCTTGATGATGATATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGGTTCTCTTTCTTTACTCTCAATTCATTTTAAGGAAGTCTTTCGGGGTAGGTAGAGGGAGCATAGTGAGATTTGGTCTTGGGTTAGGTTTCTCGTGTCCCTTTAGGGTGTTCTGGTGGCATATTTTCTTTTTGTATGTCTTTGTATTCTTTCACTTTTTCCCAATGAAAGTCGTTGATTTCATAAAAAAATCACAAAGAAAATGGTCGAGCAAGCTAGGTAACAATTGTTTTTGTCGAGCTTGATTGGATGTAGATAACTATATATCCTTCACATAAGCATAATTTGTCGAGCTTGATTGAAAGTACACATACAATTTCTAGCTTCTTCAGACAATACAAAGATAACATGTACATATCATTCAGGAAAGAAATTCTGTGTATTATATTCATGTGCTTATTCAAGATATTTCTAAAGGTTTATTTATGACTGATAATTGTTCTCATATACCAAGTGACTTGAAATTGGACATTCGTTTTCTTTGTTTGCTTGGGTTGTTATTTCAGATTTTCTGTAGTTTTAAAAAGATAGTTATTAATTAAGTGTTGAATAAAATGCATTAATCTGTAAGAACTTCATATGTTAGACTTCTATTACAATATAAATGAAGATTCATACTTGAAGAGCAAATCCAGGACATGCTTTAATGATATCTGCTGGAACTCTACTGAAGAAAATAGCTTATGAACATAATATAGTAGATGCACGAACTTCTCCAAATTTTAGTATATTGGGTGTTGTTATGATATGTGGTGCAACTAGACCCCCAATACTATTCATGTATAATAGAAGAAATAAGAAGATTCATGAAGCCAGTGATGGGGGAACACGTGGGATTAAGGGGAATAGCCATGAAGTCAATAAGGAGAGGGCATGTGGGGGAATAGAGGAAAGCAAGGAGAGCGGGGACCAGCAAGTGGGGTCCACAGTTAGTTAG

mRNA sequence

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGAGAATTATTCGTTGTGGTGGAGCCCTTGATGATGATATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGAAAATAGCTTATGAACATAATATAGTAGATGCACGAACTTCTCCAAATTTTAGTATATTGGGTGTTGTTATGATATGTGGTGCAACTAGACCCCCAATACTATTCATGTATAATAGAAGAAATAAGAAGATTCATGAAGCCAGTGATGGGGGAACACGTGGGATTAAGGGGAATAGCCATGAAGTCAATAAGGAGAGGGCATGTGGGGGAATAGAGGAAAGCAAGGAGAGCGGGGACCAGCAAGTGGGGTCCACAGTTAGTTAG

Coding sequence (CDS)

ATGATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGTCCCCGTCGCCGCACCTCAGTCGATGCCTCATCGTATGCCTCCAATGCCGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGTCGTGTTGCAACATCTTATGCCACCCAGAGAATTATTCGTTGTGGTGGAGCCCTTGATGATGATATGGCAAATATCATTGTTGCTCAACTTCTATACCTTGATGCTATTGATCCCAATAAGAAAATAGCTTATGAACATAATATAGTAGATGCACGAACTTCTCCAAATTTTAGTATATTGGGTGTTGTTATGATATGTGGTGCAACTAGACCCCCAATACTATTCATGTATAATAGAAGAAATAAGAAGATTCATGAAGCCAGTGATGGGGGAACACGTGGGATTAAGGGGAATAGCCATGAAGTCAATAAGGAGAGGGCATGTGGGGGAATAGAGGAAAGCAAGGAGAGCGGGGACCAGCAAGTGGGGTCCACAGTTAGTTAG

Protein sequence

MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRIIRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRPPILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS

Homology

[Close]

BLAST of MELO3C014880 vs. NCBI nr
Match: XP_008450213.1 (PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI 60
           MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI
Sbjct: 1   MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI 60

Query: 61  IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP 120
           IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP
Sbjct: 61  IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP 120

Query: 121 PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS 177
           PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS
Sbjct: 121 PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS 176

[Close]

BLAST of MELO3C014880 vs. NCBI nr
Match: KAA0042899.1 (uncharacterized protein E6C27_scaffold44G004160 [Cucumis melo var. makuwa] >TYK05301.1 uncharacterized protein E5676_scaffold108G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 8.0e-19
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          MIFPFLPKLI P PVAAPQSMPHRMPPMPTP+ASSTKSDSYCYRDANSSR ATS ATQ
Sbjct: 1  MIFPFLPKLIIPAPVAAPQSMPHRMPPMPTPIASSTKSDSYCYRDANSSRAATSDATQ 58

[Close]

BLAST of MELO3C014880 vs. NCBI nr
Match: KAA0033001.1 (uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK03410.1 uncharacterized protein E5676_scaffold121G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-15
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  IFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          IFPFLPKLITP P+ APQ MPHRMPPM TPVASSTKSDSYCYRDANSS  ATS A Q
Sbjct: 11 IFPFLPKLITPAPITAPQLMPHRMPPMLTPVASSTKSDSYCYRDANSSHAATSNAAQ 67

[Close]

BLAST of MELO3C014880 vs. NCBI nr
Match: KAA0037112.1 (uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK13964.1 uncharacterized protein E5676_scaffold832G001680 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 2  IFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          IFPFLPK+IT  PVAAPQ MPHRMPPM TPVASSTKSDSYCYRDANSSR ATS A Q
Sbjct: 11 IFPFLPKVITLAPVAAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSRTATSDAAQ 67

[Close]

BLAST of MELO3C014880 vs. NCBI nr
Match: KAA0037562.1 (ycf20-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-15
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 103 SPNFSILGVVMICGAT------RPPILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERA 162
           S +F  LGV  +  A        PPILFMYNRRNKKIHEA++GGTRG K NSHE N+ERA
Sbjct: 57  SLSFVALGVNDVFAAVVCVLLIEPPILFMYNRRNKKIHEANEGGTRGSKENSHEANEERA 116

Query: 163 CGGIEESKESGDQQVGSTVS 177
              IEESKE GDQQVGSTVS
Sbjct: 117 RVAIEESKEIGDQQVGSTVS 136

[Close]

BLAST of MELO3C014880 vs. ExPASy Swiss-Prot
Match: Q9S834 (ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP5 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-09
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 59  RIIRCGGALDDDMANIIVAQLLYLDAIDPNKKI 92
           RIIRCGGA+DDDMANIIVAQLLYLDA+DP K I
Sbjct: 123 RIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDI 155

[Close]

BLAST of MELO3C014880 vs. ExPASy Swiss-Prot
Match: A1AN85 (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=clpP PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.5e-04
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 58 QRIIRCGGALDDDMANIIVAQLLYLDAIDPNKKI 92
          +RII  GG +DD +AN+I+AQLL+L+A DP+K I
Sbjct: 26 ERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDI 59

[Close]

BLAST of MELO3C014880 vs. ExPASy Swiss-Prot
Match: Q6AK59 (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) OX=177439 GN=clpP PE=3 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 9.8e-04
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 44 RDANSSRVATSYATQRIIRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHN 97
          R   S  + +    +RII  G  ++DD+AN+IVAQLL+L+A DP K I +  N
Sbjct: 13 RGERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYIN 65

[Close]

BLAST of MELO3C014880 vs. ExPASy TrEMBL
Match: A0A1S3BPQ7 (uncharacterized protein LOC103491874 OS=Cucumis melo OX=3656 GN=LOC103491874 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.8e-92
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI 60
           MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI
Sbjct: 1   MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQRI 60

Query: 61  IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP 120
           IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP
Sbjct: 61  IRCGGALDDDMANIIVAQLLYLDAIDPNKKIAYEHNIVDARTSPNFSILGVVMICGATRP 120

Query: 121 PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS 177
           PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS
Sbjct: 121 PILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERACGGIEESKESGDQQVGSTVS 176

[Close]

BLAST of MELO3C014880 vs. ExPASy TrEMBL
Match: A0A5D3C069 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001210 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.9e-19
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MIFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          MIFPFLPKLI P PVAAPQSMPHRMPPMPTP+ASSTKSDSYCYRDANSSR ATS ATQ
Sbjct: 1  MIFPFLPKLIIPAPVAAPQSMPHRMPPMPTPIASSTKSDSYCYRDANSSRAATSDATQ 58

[Close]

BLAST of MELO3C014880 vs. ExPASy TrEMBL
Match: A0A5D3BWD1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00060 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-16
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 2  IFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          IFPFLPKLITP P+ APQ MPHRMPPM TPVASSTKSDSYCYRDANSS  ATS A Q
Sbjct: 11 IFPFLPKLITPAPITAPQLMPHRMPPMLTPVASSTKSDSYCYRDANSSHAATSNAAQ 67

[Close]

BLAST of MELO3C014880 vs. ExPASy TrEMBL
Match: A0A5D3CSE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001680 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 2  IFPFLPKLITPVPVAAPQSMPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 59
          IFPFLPK+IT  PVAAPQ MPHRMPPM TPVASSTKSDSYCYRDANSSR ATS A Q
Sbjct: 11 IFPFLPKVITLAPVAAPQPMPHRMPPMLTPVASSTKSDSYCYRDANSSRTATSDAAQ 67

[Close]

BLAST of MELO3C014880 vs. ExPASy TrEMBL
Match: A0A5A7T286 (Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G001840 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 53/80 (66.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 103 SPNFSILGVVMICGAT------RPPILFMYNRRNKKIHEASDGGTRGIKGNSHEVNKERA 162
           S +F  LGV  +  A        PPILFMYNRRNKKIHEA++GGTRG K NSHE N+ERA
Sbjct: 57  SLSFVALGVNDVFAAVVCVLLIEPPILFMYNRRNKKIHEANEGGTRGSKENSHEANEERA 116

Query: 163 CGGIEESKESGDQQVGSTVS 177
              IEESKE GDQQVGSTVS
Sbjct: 117 RVAIEESKEIGDQQVGSTVS 136

[Close]

BLAST of MELO3C014880 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 )

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 59  RIIRCGGALDDDMANIIVAQLLYLDAIDPNKKI 92
           RIIRCGGA+DDDMANIIVAQLLYLDA+DP K I
Sbjct: 123 RIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDI 155

The following BLAST results are available for this feature:

BLAST of MELO3C014880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450213.1	1.2e-91	100.00	PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo]	[more]
KAA0042899.1	8.0e-19	91.38	uncharacterized protein E6C27_scaffold44G004160 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0033001.1	1.4e-15	84.21	uncharacterized protein E6C27_scaffold269G00940 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0037112.1	3.1e-15	85.96	uncharacterized protein E6C27_scaffold379G00130 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0037562.1	3.1e-15	66.25	ycf20-like protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C014880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S834	4.6e-09	87.88	ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis t...	[more]
A1AN85	7.5e-04	58.82	ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain...	[more]
Q6AK59	9.8e-04	43.40	ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila (str...	[more]

BLAST of MELO3C014880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPQ7	5.8e-92	100.00	uncharacterized protein LOC103491874 OS=Cucumis melo OX=3656 GN=LOC103491874 PE=...	[more]
A0A5D3C069	3.9e-19	91.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BWD1	6.8e-16	84.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CSE0	1.5e-15	85.96	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T286	1.5e-15	66.25	Ycf20-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G0...	[more]

BLAST of MELO3C014880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02560.1	3.2e-10	87.88	nuclear encoded CLP protease 5	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 50..92 e-value: 1.8E-5 score: 24.7
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 50..97
None	No IPR available	GENE3D	3.90.226.10		coord: 38..96 e-value: 7.6E-8 score: 34.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..162
None	No IPR available	PANTHER	PTHR10381:SF12	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC	coord: 50..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014880.1	MELO3C014880.1	mRNA