MELO3C009343.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C009343.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	chr04: 32549899 .. 32551979 (+)
RNA-Seq Expression	MELO3C009343.jh1
Synteny	MELO3C009343.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTATTTTTCCTTCTGTTTGTTTGTGTGTTATCACGTGTTTATGTTTTCTCAAGAGACCCATTTGGTTTGCCCTAATTTTCTTGAAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGTAAGTCGCTTCATACACCCTGTTTATGCCAGCTTAATACTCTGCACCAATGGTTTTGGGCATGATTCATTTACTCCTTAAATGAAAAAGTAGGAAGTAATAGAGCTATCAAGTTTTGAACATCAAATTATCAACGAGCTCATTTTATTTAGAGAACTCATCGTAGTGATGTTCTCTTGCTCGGTCTTATTTCTTGGGGTAAAACGTATGTATAGATTATCTGCTTCCATGGTGTTTTTTGAGGCCAGTAGTTTCATAAATTCACCTCTGTGCTCCAATTACTTAGTGTTATCCTTCATTTTCAATCAAATCTCAGTATTGGATTTTCTTCTGGTTAATGATTCTTGGTCAACTTATTACAGGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGCTTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGATGAACCTTGATATGTGCCCTCACGTTCAATTAAACCTTGCTTACTGAACTCAAGAGATAGACAACATTAAGGACCAATTGCTATAAAAATGAAATCCTCTTCATGTAATCAGGTTAACCATGATTTTGTTGTAGCATCTTTGCCTATATGAAATCCTCTTCATGTAATCAGATTAATTTTCAATTCATTCGAATACATTAATGACTCTTTTCGATTCGCTTCACTTGTTTTCTTCGTATATGTTCTTTTGTTGTTCCCATCTGTCTTGCCTGAAGTGATATTTCTTGTGGTGCAATGTTTTATCTCAGTTTATCATTTTTCTTTTCTTATAAAACTCATTTCATGCACGGTATTCACCTCCGAAGTATGATTTGGAATCAAGCATCATTCATATATCTAAGTAAAAATGTATACATTGCAGGACTTGGTTGGAAGATCCATCCGAGTAACACAAGCCGAAGCAAAGCCGCCAAGGCGCCAGTTTTGAGTATCTGCAGCTTTTATTTATAAGGAATTAACGTGGTTTTTGAGCGCTCTTATATTAACCTTATTTTTCCATGGTCTGTTCTCCGATAGTAAATGGTGCTGAATGATTTACTGTACTTTTTCTCTTTGATCGATGATATTTGATATATTTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAAACCCACATATGTTGTGTCGTGCCCAAACTCATCAAGGCTGAGGCTACAATATCATTTTAAAGATATTATGCTTCCAACATGTAAAAGCAGGTGCTTGCAC

mRNA sequence

TTCGCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGCTTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGATGAACCTTGATATGTGCCCTCACGTTCAATTAAACCTTGCTTACTGAACTCAAGAGATAGACAACATTAAGGACCAATTGCTATAAAAATGAAATCCTCTTCATGTAATCAGGTTAACCATGATTTTGTTGTAGCATCTTTGCCTATATGAAATCCTCTTCATGTAATCAGATTAATTTTCAATTCATTCGAATACATTAATGACTCTTTTCGATTCGCTTCACTTGTTTTCTTCGTATATGTTCTTTTGTTGTTCCCATCTGTCTTGCCTGAAGTGATATTTCTTGTGGTGCAATGTTTTATCTCAGTTTATCATTTTTCTTTTCTTATAAAACTCATTTCATGCACGGTATTCACCTCCGAAGTATGATTTGGAATCAAGCATCATTCATATATCTAAGTAAAAATGTATACATTGCAGGACTTGGTTGGAAGATCCATCCGAGTAACACAAGCCGAAGCAAAGCCGCCAAGGCGCCAGTTTTGAGTATCTGCAGCTTTTATTTATAAGGAATTAACGTGGTTTTTGAGCGCTCTTATATTAACCTTATTTTTCCATGGTCTGTTCTCCGATAGTAAATGGTGCTGAATGATTTACTGTACTTTTTCTCTTTGATCGATGATATTTGATATATTTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAAACCCACATATGTTGTGTCGTGCCCAAACTCATCAAGGCTGAGGCTACAATATCATTTTAAAGATATTATGCTTCCAACATGTAAAAGCAGGTGCTTGCAC

Coding sequence (CDS)

ATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCAGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGCTTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACAGGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGA

Protein sequence

MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSSRFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRGSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNGVVSLHRPFILVRFFSQFCICL

Homology

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BLAST of MELO3C009343.jh1 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 482 bits (1240), Expect = 2.02e-170
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDS YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNAS FDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 255
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

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BLAST of MELO3C009343.jh1 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 445 bits (1145), Expect = 6.45e-156
Identity = 240/263 (91.25%), Postives = 246/263 (93.54%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDSSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYGPPP KRDDS F
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVT 240
           RGSRNAS FDNRNRVHVSNLAWGVDDLTLENLFRE+GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLNGVVSLHRP 261
           YNSAEEVN AIQSL+GV    RP
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRP 263

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BLAST of MELO3C009343.jh1 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 429 bits (1104), Expect = 1.09e-149
Identity = 229/262 (87.40%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLS+LTLKTLSLSNPK KLFSLNPSS+  L NP SISS VL S RVS PFSS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +++SYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYGPPP +RDDS FR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTY 240
           GSRNAS FDN NRVHVSNLAWGVDDLTLENLFRE GNV+EAKVVYDR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLNGVVSLHRP 261
           NSAEEVNNAIQSL+G     RP
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRP 262

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BLAST of MELO3C009343.jh1 vs. NCBI nr
Match: XP_022935639.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 399 bits (1024), Expect = 1.64e-137
Identity = 213/256 (83.20%), Postives = 229/256 (89.45%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDSSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPP KRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS+FDN N VHVSNLAWGVDDLTLENLFREQGNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 255
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343.jh1 vs. NCBI nr
Match: XP_023538708.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1021), Expect = 4.71e-137
Identity = 213/256 (83.20%), Postives = 228/256 (89.06%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFGLFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDSSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPP KRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS+FDN N VHVSNLAWGVDDLTLENLFREQGNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 255
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.6e-75
Identity = 173/267 (64.79%), Postives = 198/267 (74.16%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KFKLFSLNPSSSIRLLNPISISSFVLPSHRVS 60
           M++SA+SL   SLT +TL L  P         FSL PSS    LN +S+SS        S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSS----LN-LSLSS-------SS 60

Query: 61  SPFSSRFVRNVAVSSDYDQEEDTLEADGDDS-----SYAPDLKLFVGNLPFSVDSAQLAG 120
           S FSSRFVR V + SD+DQ ED    DGDD      +++PDLK+FVGNLPFS DSA LA 
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDV--EDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAE 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPP 180
           LFE AG VE VEVIYDK TG+SRGFGFVTMS+ +EVEAA QQFNGYELDGR+LRVN GPP
Sbjct: 121 LFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 180

Query: 181 P-KRDDSPFR-GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDS 240
           P KR++S FR GSR   SFD+ NRV+V NLAWGVD   LE LF EQG V++AKVVYDRDS
Sbjct: 181 PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDS 240

Query: 241 GRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           GRSRGFGFVTY+SAEEVNNAI+SL+GV
Sbjct: 241 GRSRGFGFVTYSSAEEVNNAIESLDGV 252

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.2e-72
Identity = 168/271 (61.99%), Postives = 196/271 (72.32%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KFKLFSLNPSSSIRLLNPISISSFVLPSHRVS 60
           M++SA+SL   SLT +TL L  P         FSL PSS    LN +S+SS        S
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSS----LN-LSLSS-------PS 60

Query: 61  SPFSSRFVRNVAVSSDYDQEEDTLEAD---GDDSSYAPDLKLFVGNLPFSVDSAQLAGLF 120
           S FSSRFVR V +  D+DQ ED  + D    ++ +++PDLK+FVGNL FS DSA LA LF
Sbjct: 61  SCFSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP- 180
           E AG VE VEVIYDK TG+SRGFGFVTMS+ +EVEAA QQFNGYELDGR+LRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDSPFR-------GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVY 240
           KR++S FR       GSR   SFD+ NRV+V NLAWGVD   LE LF EQG V++AKVVY
Sbjct: 181 KRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVY 240

Query: 241 DRDSGRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           DRDSGRSRGFGFVTY+SAEEVNNAI+SL+GV
Sbjct: 241 DRDSGRSRGFGFVTYSSAEEVNNAIESLDGV 258

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 6.5e-71
Identity = 162/278 (58.27%), Postives = 198/278 (71.22%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVS----- 60
           M+ASA+SL LSS         NPK   F ++  +S+ LL+P    SF L S  VS     
Sbjct: 1   MAASASSLALSSF--------NPKSLPFGVSRPASVSLLSP--SLSFKLNSDSVSFSIAA 60

Query: 61  ---SPFSSRFVRNVAVSSDYDQEEDTLE--ADGDDSSYAPDLKLFVGNLPFSVDSAQLAG 120
              SP +SRF RNVA++S+++ EED     A   + S++ DLKLFVGNLPF+VDSAQLA 
Sbjct: 61  KWNSP-ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQ 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-P 180
           LFESAG VE VEVIYDK TG+SRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN G P
Sbjct: 121 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 180

Query: 181 PPKRDDSPFRGSRNA-------------SSFDNRNRVHVSNLAWGVDDLTLENLFREQGN 240
           PPKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF EQG 
Sbjct: 181 PPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGK 240

Query: 241 VLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNG 255
           V+EA+V+YDRDSGRS+GFGFVTY+S++EV NAI+SL+G
Sbjct: 241 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 8.8e-68
Identity = 158/277 (57.04%), Postives = 190/277 (68.59%), Query Frame = 0


Query: 2   SASAASLTLSSLTLKTLSLSNPKFKL--FSLNPSSSIRLLNPISISSFVLPSHRVSSPFS 61
           S+S +SL    +T +T S   P   L  FSL PSSS+ L    S+SS  +       PF 
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSL-PSSSLNL----SLSSSSIGHSASIKPFE 62

Query: 62  SRFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 121
           S F   VA+ SD+DQ ED +E   +   ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGP-PPKRDDSPF 181
            VEVIYDK +G+SRGFGFVTMST +EVEAA QQFNGYE+DGR++RVN GP P KR++S F
Sbjct: 123 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 RGSRNAS--------------------SFDNRNRVHVSNLAWGVDDLTLENLFREQGNVL 241
            G R  +                    S D+ NRV+V NL+WGVDDL L+ LF EQGNV+
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           +AKVVYDRDSGRSRGFGFVTY+SA+EVN+AI SLNG+
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGI 272

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-67
Identity = 163/321 (50.78%), Postives = 197/321 (61.37%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRG 255
                    + S   + NR++V NL+WGVDD+ LENLF EQG V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 482 bits (1240), Expect = 9.80e-171
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDS YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNAS FDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 255
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 482 bits (1240), Expect = 9.80e-171
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDS YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNAS FDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 255
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 445 bits (1145), Expect = 3.12e-156
Identity = 240/263 (91.25%), Postives = 246/263 (93.54%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDSSYAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYGPPP KRDDS F
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVT 240
           RGSRNAS FDNRNRVHVSNLAWGVDDLTLENLFRE+GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLNGVVSLHRP 261
           YNSAEEVN AIQSL+GV    RP
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRP 263

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 399 bits (1024), Expect = 7.96e-138
Identity = 213/256 (83.20%), Postives = 229/256 (89.45%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDSSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPP KRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS+FDN N VHVSNLAWGVDDLTLENLFREQGNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 255
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL
Match: A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)

HSP 1 Score: 395 bits (1014), Expect = 2.65e-136
Identity = 211/256 (82.42%), Postives = 227/256 (88.67%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  L LSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ V  SHRVS  F S
Sbjct: 1   MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVFRSHRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSSYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDSSYAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP-KRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVN GPPP KRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNCGPPPPKRDDSSFR 180

Query: 181 GSRNASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS+FDN N VHVSNLAWGVDDLTLENLFREQGNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 255
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343.jh1 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 268.9 bits (686), Expect = 4.6e-72
Identity = 162/278 (58.27%), Postives = 198/278 (71.22%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVS----- 60
           M+ASA+SL LSS         NPK   F ++  +S+ LL+P    SF L S  VS     
Sbjct: 1   MAASASSLALSSF--------NPKSLPFGVSRPASVSLLSP--SLSFKLNSDSVSFSIAA 60

Query: 61  ---SPFSSRFVRNVAVSSDYDQEEDTLE--ADGDDSSYAPDLKLFVGNLPFSVDSAQLAG 120
              SP +SRF RNVA++S+++ EED     A   + S++ DLKLFVGNLPF+VDSAQLA 
Sbjct: 61  KWNSP-ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQ 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-P 180
           LFESAG VE VEVIYDK TG+SRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN G P
Sbjct: 121 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 180

Query: 181 PPKRDDSPFRGSRNA-------------SSFDNRNRVHVSNLAWGVDDLTLENLFREQGN 240
           PPKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF EQG 
Sbjct: 181 PPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGK 240

Query: 241 VLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNG 255
           V+EA+V+YDRDSGRS+GFGFVTY+S++EV NAI+SL+G
Sbjct: 241 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MELO3C009343.jh1 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 163/321 (50.78%), Postives = 197/321 (61.37%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRG 255
                    + S   + NR++V NL+WGVDD+ LENLF EQG V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343.jh1 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 163/321 (50.78%), Postives = 197/321 (61.37%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRG 255
                    + S   + NR++V NL+WGVDD+ LENLF EQG V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343.jh1 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68
Identity = 163/321 (50.78%), Postives = 197/321 (61.37%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSR------------------------------------------------- 240
           KR++S  RG R                                                 
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 ---------NASSFDNRNRVHVSNLAWGVDDLTLENLFREQGNVLEAKVVYDRDSGRSRG 255
                    + S   + NR++V NL+WGVDD+ LENLF EQG V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343.jh1 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 245.4 bits (625), Expect = 5.5e-65
Identity = 163/342 (47.66%), Postives = 197/342 (57.60%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------SYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS      S++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGY---------------- 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGY                
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIR 180

Query: 181 -----ELDGRSLRVNYG-PPPKRDDSPFRGSR---------------------------- 240
                E +GR LRVN G PPPKR++S  RG R                            
Sbjct: 181 VLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGY 240

Query: 241 ------------------------------NASSFDNRNRVHVSNLAWGVDDLTLENLFR 255
                                         + S   + NR++V NL+WGVDD+ LENLF 
Sbjct: 241 GSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFN 300

The following BLAST results are available for this feature:

BLAST of MELO3C009343.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442686.1	2.02e-170	98.82	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_004137828.1	6.45e-156	91.25	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_038905951.1	1.09e-149	87.40	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_022935639.1	1.64e-137	83.20	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646....	[more]
XP_023538708.1	4.71e-137	83.20	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C009343.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	2.6e-75	64.79	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	1.2e-72	61.99	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	6.5e-71	58.27	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
P49314	8.8e-68	57.04	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q43349	1.5e-67	50.78	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]

BLAST of MELO3C009343.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQA3	9.80e-171	98.82	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	9.80e-171	98.82	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A0A0LAY6	3.12e-156	91.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A6J1F601	7.96e-138	83.20	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KUB7	2.65e-136	82.42	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of MELO3C009343.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	4.6e-72	58.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	1.1e-68	50.78	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	1.1e-68	50.78	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	1.1e-68	50.78	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	5.5e-65	47.66	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 93..166 e-value: 5.1E-28 score: 109.1 coord: 192..265 e-value: 3.7E-24 score: 96.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 94..164 e-value: 9.0E-20 score: 70.3 coord: 194..262 e-value: 2.1E-16 score: 59.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 191..269 score: 18.649113
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.518938
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 188..275 e-value: 9.2E-24 score: 85.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 64..187 e-value: 5.5E-30 score: 106.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..186
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..273
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..273
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 2.09013E-33 score: 115.018
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 187..275
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009343.jh1.t1	MELO3C009343.jh1.t1	mRNA
MELO3C009343.jh1.t2	MELO3C009343.jh1.t2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding