MELO3C008755 (gene) Melon (DHL92) v4

Overview
NameMELO3C008755
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr05: 18891697 .. 18891942 (+)
RNA-Seq ExpressionMELO3C008755
SyntenyMELO3C008755
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

mRNA sequence

ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

Coding sequence (CDS)

ATGTCGTCTGACGACATAATGGGCACACAACCCGAACGTGCAAGTGATGGTAGGAATGCTTCAAACGGATCGAAGAGGAAGCAGGGAAGCCAGCCAGTAGAAACTACGAAAATCATTCGTAGTGCCATGGAATACGCCAATAACCATCTTAACCACATTGCAGACTGGTCGATCATACAACGCCAAGATGCAAGCGTAACATGGCAAGAGGTGTCGTTCTACAGTTACAGGGAATCCTCGAACTGA

Protein sequence

MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQRQDASVTWQEVSFYSYRESSN
Homology
BLAST of MELO3C008755 vs. NCBI nr
Match: TYK08370.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ
Sbjct: 206 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 265

Query: 61  RQDASVTWQEVSFYSYRESSN 82
           RQDASVTWQEVSFYSYRESSN
Sbjct: 266 RQDASVTWQEVSFYSYRESSN 286

BLAST of MELO3C008755 vs. NCBI nr
Match: KAA0047716.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 3.3e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ
Sbjct: 159 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 218

Query: 61  RQDASVTWQEVSFYSYRESSN 82
           RQDASVTWQEVSFYSYRESSN
Sbjct: 219 RQDASVTWQEVSFYSYRESSN 239

BLAST of MELO3C008755 vs. NCBI nr
Match: KAA0042367.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D+ + ++ ER  DGRNAS+ SKRK+ SQPVETT II++ MEYAN+ LN+IA+W I++
Sbjct: 32  MSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILR 91

Query: 61  RQDASVTWQEV 72
            Q+AS T +EV
Sbjct: 92  NQNASATQEEV 102

BLAST of MELO3C008755 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           M SDDIMGT+P+R+++GR  S+GSKRKQG Q VET +IIR+ ME++N+ L  I +W  +Q
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

Query: 61  RQDASVTWQEV 72
           RQDAS    EV
Sbjct: 102 RQDASARLVEV 112

BLAST of MELO3C008755 vs. NCBI nr
Match: KAA0036791.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.3e-11
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS DD+MGT+  R S+ RN S+ SKRK+    +++  I+R+A+EY N  LNHIA+W ++Q
Sbjct: 150 MSPDDLMGTRIARVSERRNVSSRSKRKRPGHAIDSGNIVRTAIEYENEQLNHIAEWPVLQ 209

Query: 61  RQDASVTWQEV 72
           RQDAS T QE+
Sbjct: 210 RQDASQTRQEI 220

BLAST of MELO3C008755 vs. ExPASy TrEMBL
Match: A0A5D3CAJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001830 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ
Sbjct: 206 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 265

Query: 61  RQDASVTWQEVSFYSYRESSN 82
           RQDASVTWQEVSFYSYRESSN
Sbjct: 266 RQDASVTWQEVSFYSYRESSN 286

BLAST of MELO3C008755 vs. ExPASy TrEMBL
Match: A0A5A7U0G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G002300 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.6e-36
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ
Sbjct: 159 MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 218

Query: 61  RQDASVTWQEVSFYSYRESSN 82
           RQDASVTWQEVSFYSYRESSN
Sbjct: 219 RQDASVTWQEVSFYSYRESSN 239

BLAST of MELO3C008755 vs. ExPASy TrEMBL
Match: A0A5A7TKY0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00690 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.2e-13
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D+ + ++ ER  DGRNAS+ SKRK+ SQPVETT II++ MEYAN+ LN+IA+W I++
Sbjct: 32  MSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILR 91

Query: 61  RQDASVTWQEV 72
            Q+AS T +EV
Sbjct: 92  NQNASATQEEV 102

BLAST of MELO3C008755 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-13
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           M SDDIMGT+P+R+++GR  S+GSKRKQG Q VET +IIR+ ME++N+ L  I +W  +Q
Sbjct: 42  MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQ 101

Query: 61  RQDASVTWQEV 72
           RQDAS    EV
Sbjct: 102 RQDASARLVEV 112

BLAST of MELO3C008755 vs. ExPASy TrEMBL
Match: A0A5D3C2D3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00220 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.0e-11
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 1   MSSDDIMGTQPERASDGRNASNGSKRKQGSQPVETTKIIRSAMEYANNHLNHIADWSIIQ 60
           MS D++MGT+    S GR  S+GSKRK+G Q V++  IIR+A+EY N  LN IA W ++Q
Sbjct: 87  MSPDELMGTRAAGVSKGRYVSSGSKRKRGGQAVDSGDIIRTAIEYENEQLNRIAKWLVLQ 146

Query: 61  RQDASVTWQEV 72
           RQDAS T QEV
Sbjct: 147 RQDASQTCQEV 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK08370.13.3e-36100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047716.13.3e-36100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042367.11.5e-1257.75retrotransposon protein [Cucumis melo var. makuwa] >TYK15486.1 retrotransposon p... [more]
KAA0060529.11.9e-1257.75retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0036791.16.3e-1152.11retrotransposon protein [Cucumis melo var. makuwa] >TYJ95858.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CAJ41.6e-36100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0G01.6e-36100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TKY07.2e-1357.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V4699.4e-1357.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2D33.0e-1156.34Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008755.1MELO3C008755.1mRNA