MELO3C008447.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008447.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCoiled-coil domain-containing protein 108 isoform X2
Locationchr03: 6781904 .. 6782200 (-)
RNA-Seq ExpressionMELO3C008447.jh1
SyntenyMELO3C008447.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATCAAATTATTTAGATATTTCAAATGAAAGTAGTGTAATGACATTTGTTTCAAGTATCACCATGTTTCGATTACTAGTCATCTTGCATCGTGGGCTTCTCGCCTGTCTCAATTGTCCATCCATCATGGGTCTTCCATTGTCAAATCACGCAGCAAGTAAGGATGCCCATATGAGATCACATAACAAGTATGAGACATCTCATCCGAGATCACACAGCAAGGATGAGATATCCCATCTGAGATCACACAGTAAGGATGAGGCATCTCACCCAAGATCACACAACAATGGTAAGG

mRNA sequence

TTTTATCAAATTATTTAGATATTTCAAATGAAAGTAGTGTAATGACATTTGTTTCAAGTATCACCATGTTTCGATTACTAGTCATCTTGCATCGTGGGCTTCTCGCCTGTCTCAATTGTCCATCCATCATGGGTCTTCCATTGTCAAATCACGCAGCAAGTAAGGATGCCCATATGAGATCACATAACAAGTATGAGACATCTCATCCGAGATCACACAGCAAGGATGAGATATCCCATCTGAGATCACACAGTAAGGATGAGGCATCTCACCCAAGATCACACAACAATGGTAAGG

Coding sequence (CDS)

ATGACATTTGTTTCAAGTATCACCATGTTTCGATTACTAGTCATCTTGCATCGTGGGCTTCTCGCCTGTCTCAATTGTCCATCCATCATGGGTCTTCCATTGTCAAATCACGCAGCAAGTAAGGATGCCCATATGAGATCACATAACAAGTATGAGACATCTCATCCGAGATCACACAGCAAGGATGAGATATCCCATCTGAGATCACACAGTAAGGATGAGGCATCTCACCCAAGATCACACAACAATGGTAAG

Protein sequence

MTFVSSITMFRLLVILHRGLLACLNCPSIMGLPLSNHAASKDAHMRSHNKYETSHPRSHSKDEISHLRSHSKDEASHPRSHNNGK
Homology
[Close]
BLAST of MELO3C008447.jh1 vs. NCBI nr
Match: TYK18643.1 (coiled-coil domain-containing protein 108 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 140 bits (353), Expect = 2.44e-41
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 9  MFRLLVILHRGLLACLNCPSIMGLPLSNHAASKDAHMRSHNKYETSHPRSHSKDEISHLR 68
          MFRLLVI HRGLLACLNCPSI+GLPL NHAASKDAHMRSHNKYE SHPRSHSKDEISHLR
Sbjct: 1  MFRLLVISHRGLLACLNCPSIIGLPLPNHAASKDAHMRSHNKYEASHPRSHSKDEISHLR 60

Query: 69 SHSKDEASHPRSHNNGK 85
          SHSKDEASHPRSHNNGK
Sbjct: 61 SHSKDEASHPRSHNNGK 77

[Close]
BLAST of MELO3C008447.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D517 (Coiled-coil domain-containing protein 108 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold390G00050 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 1.18e-41
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 9  MFRLLVILHRGLLACLNCPSIMGLPLSNHAASKDAHMRSHNKYETSHPRSHSKDEISHLR 68
          MFRLLVI HRGLLACLNCPSI+GLPL NHAASKDAHMRSHNKYE SHPRSHSKDEISHLR
Sbjct: 1  MFRLLVISHRGLLACLNCPSIIGLPLPNHAASKDAHMRSHNKYEASHPRSHSKDEISHLR 60

Query: 69 SHSKDEASHPRSHNNGK 85
          SHSKDEASHPRSHNNGK
Sbjct: 61 SHSKDEASHPRSHNNGK 77

The following BLAST results are available for this feature:
BLAST of MELO3C008447.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK18643.12.44e-4194.81coiled-coil domain-containing protein 108 isoform X2 [Cucumis melo var. makuwa][more]
BLAST of MELO3C008447.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C008447.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D5171.18e-4194.81Coiled-coil domain-containing protein 108 isoform X2 OS=Cucumis melo var. makuwa... [more]
BLAST of MELO3C008447.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008447.jh1.t1MELO3C008447.jh1.t1mRNA