MELO3C007997 (gene) Melon (DHL92) v4

Overview


Name	MELO3C007997
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerases IV and V subunit 4-like
Location	chr08: 6619473 .. 6623232 (-)
RNA-Seq Expression	MELO3C007997
Synteny	MELO3C007997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATTAGAAACTAAAAATGAACTTTTGCAATTATTTTTTTTTAAAACCCCAATAACTTCTTTTTGCAAATTTCTTTTCCAATTACAATTTATAATTAGAGAATTGAAAGCTTGAAACGAAGCGAAGGCTCGTCGTCATTCGGTTGCGCAAGACGAAAGGGAAGATTCTCCCATTTTCCGATCAACCCAACAGGTCCTTTTCTTCTTCAACTCCGCCATTGCATTATTCTCATCTTCCTTCTTATTTTACTCTTCTCTTCTCTACTTTTTGTCGATTCTTTTTCCCTGTTTTTCTCTTTTCGTTTCAAGGAAATATAGTGTTTCATTTCAGTTTCCAATTTGTAAACTAACATAAACATCTCATGAATGCCTTAGTTTTGATTTTCTGAAGTAGGTTTTTCTTGGAGCTTAATCGAACTAAACCAGAGGAACAAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGGTTCGTATCGTTAATATCTTTTCACTACCGGGAATGGGAGGTTGTGTGTTGTTTTCAACTTCATGCATCTGTTCTGTTGCCCCCATTGATTCAACTGAATTCACTCTTGTCCAAATTACTTATCAATCTTCAAGGAAGATTTTGTTTTGAAAATCTCTTTGATTTTAAAGCTACTATTATAAATGTGAACTGAAAATTAGTGAATCCTTGTTGCTTCCAGCTTTCCATGTGATTATGCTGGTAGTTTGCTAAATTGATCATGGGTCACAGGCATACATCATTAAATATAATTAGTTATGTTTTCTATCAAATGATTCCTAACTTGTTGCATAGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGTCAATATCCTTTTTTAATCCTTCTAGGAGTGATACTTTTTGTGTTATTCAAAATACAAATCACTTGATGTGCTAATGTTGAATAAGTTATATGTCAGAAGAATGTGCTTACCATATAAAACTACTTAATTCGGAAGTAATTGTACATACAGGATCAGTTGATGCGCCAAATTCTTTTTCGATGAAATACAGTGGCAAAAATGGTACTAATTTTAAATGTTTATTTTATTTTCTATTTTATTTACTCTAATCTTTCTACCGACTTCATAAGTCTCTTCTTTGTTATTTTTCTGTTAATACAAATTCTCTCCTTTCCAATTGTGGCTTGTAGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGGTGGGTATTGCCTTGACTTTGAATATGGTTTTATTCAGTATCGCATGGCCATGAATGTATTCGCTTTTGCTGTTATTCATATCATGGAACGTCGGTTTTGCCTTACTCTGTATGGCAACTGGCTGTTTTCTCTTTTCTGTTCTGAGGCTGTATTTTTTTTTTTTTTATTTTACTTTTATTCTTTTACTGATGGAATTAAGAGAAGTATGTCTCCTAGTGTGAAATTGTTCATTTGATGGAATTGTTGGAGGGTGTTTGTATCCTGTTTATATTGTGCCTTTTTTTCTTTTTCATTTTGGTTTTAAATTGGTGTGCAGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTAAGTGAATATTAGTAACCATTTATTTGTAAGAATAATTTCCCATGCTTACAAACTTGATTTGCTTTCATCTTTTAGGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCCGAGTCAGTTAGACCAGTTCTTGAGTATCCTTGTTTTGATGAATAGGCCATTAGATTGTATTGCTAATTTCTTTTTTATTTTTCTTTTTGGATGGTATCAATTTATATACTACTGTGGAAGTATGCTTTTGCACCAACCCAGCACTCCTGGTGTGCTGTATGGTACTTGTTTCATTTGTCTTTTTATTTGAGTGCTTAACTGAAAATTCTAGAACCCTCAAGAAATATGGCATAACAGATAGTGAGGTAGTTATATCTATCTTCTTTTTTGCCTTTCTCAAAATTAGTTCTTCGAATGATGAACTGACTCGGTATTAATGTTGATTCAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGGTACGATTTATCTGTCCGTATTTTCTGTAATATCACCATGCCATATGAATATACTTAAAACACATTTTTTTCCTGCCTATCTGAGCATCGCTAAAGTGGCCAAGGCATTGTACCCTCAATCAAAAGGTTAGAGGGTTAAATTGTCACCTCTATTAGTTGAACTTAAAAATTTATTTAGTTTCTATACTTATTCTGCTATTTGGTCCTCTTGTATTTCCTTAGATCAAGTAGGTCGTCCTAGCTTATAATTACTTGACAAGAATAATTTAGTGATTTACTAATGGGTAAAAAATATTGCACGTGTGCTGAATTCCAACACAATATGAAAATATTTCGTTTCCTATCACCCTAAAAAAAGTGAAAATATATAATATAAGAACTGAAAATGCAAGGGTAAAACAAAAATTGAAGACTTTAAAAGAGCAATGGTAAAATAATTATAAATGGGTCATAACCTTTTTCAGTCAACTTGGTATTGCCTCCCTCTTAATATATTGTAATTCTAAAAGTATATTCAAAATATTTAAGGTTTTGTAGCTTCTCTTGTTTGCCCTCCCAAAAACTTTAGGATTCAATATTATATTTATAGAAAGTTAGATCGAAAAGAATTTGCTCCTCTCTAAGATTTTTTCTTTTCTTTTTTTGGATTTTTCTTGTTTCGGAGGTAATCCTTTTGAACTGAAACTATTCTTCAAATGTTTCCAAGTGTTAGTAAGGACCTTAAAAATACATTTAAATATGTGTAGCCTACATAGATGGGTTATGTATAGGTTATGCATCATTGGAATTTTGTTGCTTTTGATTATTGTTTATTCATTTATTTGATTCCAACATGGTTACATACAAAGCAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGAACTGAAGCCATCGAGTTGCTTGCTGTTGCTGTTGCTCAGGTCCGGTTGCCCGCTCCCCTTCCTGTGAAAATTGTTTTATGGCATTTGAAAATTAGGACCTTATCTTTTCAATGGCTTTCAATAGATATAACTTCGGGGGAAGTAAAGTATTAGCCCATCGGAATATTTCGTTCTTGAAGAGATCTGTATTTGCTACTGGCATTGTTGATATAGTGTAGAAATATGGCTTAACTTTACTGAGAATGCATTTCCCACCTGAATCAACTCTGATAGCCTGAAAAATTAAACTAGAAAACTTAGATAACTTATAGATATTAAATGTCAATTATTATATGCTTTTTGCTATTAGAGTACAAGATAATACTTTCAAGATTTTCAAATGCTCCATTCTAACTAAATGTACTTTCCGTTTCTGATAAGAAGAAAAATTTACGTGGAGATTATAAAGACCAACGATGTCATTTGGAATGCCCATTGACTCTCCAATCCACAAACGTTATTCTAACAAAAGAATTGTTCCG

mRNA sequence

AAATAATTAGAAACTAAAAATGAACTTTTGCAATTATTTTTTTTTAAAACCCCAATAACTTCTTTTTGCAAATTTCTTTTCCAATTACAATTTATAATTAGAGAATTGAAAGCTTGAAACGAAGCGAAGGCTCGTCGTCATTCGGTTGCGCAAGACGAAAGGGAAGATTCTCCCATTTTCCGATCAACCCAACAGGTTTTTCTTGGAGCTTAATCGAACTAAACCAGAGGAACAAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCCAAATTCTTTTTCGATGAAATACAGTGGCAAAAATGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCCGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGAAATATGGCATAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGAACTGAAGCCATCGAGTTGCTTGCTGTTGCTGTTGCTCAGGTCCGGTTGCCCGCTCCCCTTCCTGTGAAAATTGTTTTATGGCATTTGAAAATTAGGACCTTATCTTTTCAATGGCTTTCAATAGATATAACTTCGGGGGAAGTAAAGTATTAGCCCATCGGAATATTTCGTTCTTGAAGAGATCTGTATTTGCTACTGGCATTGTTGATATAGTGTAGAAATATGGCTTAACTTTACTGAGAATGCATTTCCCACCTGAATCAACTCTGATAGCCTGAAAAATTAAACTAGAAAACTTAGATAACTTATAGATATTAAATGTCAATTATTATATGCTTTTTGCTATTAGAGTACAAGATAATACTTTCAAGATTTTCAAATGCTCCATTCTAACTAAATGTACTTTCCGTTTCTGATAAGAAGAAAAATTTACGTGGAGATTATAAAGACCAACGATGTCATTTGGAATGCCCATTGACTCTCCAATCCACAAACGTTATTCTAACAAAAGAATTGTTCCG

Coding sequence (CDS)

ATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCAAAAAAAACCTGCAAAGTCTTCCCTCAAGTCTTCCGCTCTCAAGGATGCTTCTCTAAAAGGAAAGGATGATAGTTTGTCAAAGCTAAAGAAGGGAAGGAAAGTCCAGTTCGATGCTCAAGGATCAGTTGATGCGCCAAATTCTTTTTCGATGAAATACAGTGGCAAAAATGGTGACATGGGTAAAGGAGGAAAAGGTGCAAACACGAAGGCTTCTGTTGCAAAGGAACCCCAATCACTAGAATTAAAGATTGAGCAAGAACTGCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAAGCTGCACAACTTTTACAGGGAATCCAAGATCAGATGGTTTTTCTATCCGCTGATCCAACCATAAAAATTCCCACGTCATTTGATAGGGGATTGCAATATGCTAAAAGAGCCAACCACTATGTAAATGCCGAGTCAGTTAGACCAGTTCTTGAAACCCTCAAGAAATATGGCATAACAGATAGTGAGATATGTGTGATTGCTAATGTCTGCCCAGACACTACTGATGAAGTTTTTGCTCTTCTTCCATCCTTGAAGAACAAAAGAAGCAAGCTAAGTGAACCTCTCAACAATGTCTTGAGTGAGCTAGCCAAGGTAAAATCATCCTGA

Protein sequence

MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSFSMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS

Homology

[Close]

BLAST of MELO3C007997 vs. NCBI nr
Match: XP_008440955.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440957.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440958.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo] >XP_008440959.1 PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 417.9 bits (1073), Expect = 5.3e-113
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 220

[Close]

BLAST of MELO3C007997 vs. NCBI nr
Match: XP_004134991.2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658100.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP_011658101.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >KGN49020.1 hypothetical protein Csa_002874 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA N+F
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220

[Close]

BLAST of MELO3C007997 vs. NCBI nr
Match: XP_008440960.1 (PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis melo])

HSP 1 Score: 406.0 bits (1042), Expect = 2.1e-109
Identity = 216/220 (98.18%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDAPNSF
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 216

[Close]

BLAST of MELO3C007997 vs. NCBI nr
Match: XP_011658103.1 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP_011658104.1 DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 6.3e-106
Identity = 207/220 (94.09%), Postives = 214/220 (97.27%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDA N+F
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 216

[Close]

BLAST of MELO3C007997 vs. NCBI nr
Match: XP_038881037.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881038.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida] >XP_038881039.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 390.2 bits (1001), Expect = 1.2e-104
Identity = 204/220 (92.73%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MS+KGEKGF VQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA ++F
Sbjct: 1   MSDKGEKGFPVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAQSTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGD+GKGGKG NTKAS AKEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGVNTKASAAKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN+ESVRPVLETLKK+G+T+SEICVIAN
Sbjct: 121 QDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNSESVRPVLETLKKHGLTESEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLK KRSKLSEPLNNVL ELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKGKRSKLSEPLNNVLFELAKVKSS 220

[Close]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot
Match: Q6DBA5 (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-37
Identity = 106/225 (47.11%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFD-----AQGSVD 60
           MSEKG KG        KSSLKS   KD    GKD S +KLKKGRK+ FD     A   + 
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  APNSFSMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQ 120
             +S    +       GK  K   TK+S      S ELK   +LP+N   +C+MDCEA Q
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDK--PTKSS-KNSLHSFELK---DLPEN--AECMMDCEAFQ 120

Query: 121 LLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEI 180
           +L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK YGI+D E+
Sbjct: 121 ILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEM 180

Query: 181 CVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           CVIAN   ++ DEV A +PSLK K+  +++PL + L EL+K+K S
Sbjct: 181 CVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

[Close]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 86  KEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQY 145
           +E  + ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 146 AKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNK-RSKLS 205
            KR + Y N ++VR V E L ++ +T+ E+CV+ N+CP+T +E  A++PSLK K R+   
Sbjct: 65  VKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDD 124

Query: 206 EPLNNVLSELAKVK 219
           E +  +L++L+ VK
Sbjct: 125 EAIEKMLNDLSLVK 135

[Close]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-06
Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 0


Query: 81  KASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQ---GIQDQ----------MVFL 140
           ++ + +E     LK  ++L K+ K   L++ E A LL+   GI +           ++ L
Sbjct: 8   RSGIQEEEDLTTLKFPRDL-KDAK--FLLNSEVAILLEHRKGISESEGTEFPQNTLLIHL 67

Query: 141 SADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTD 200
             +    I  +F + L YA++ + Y N  S++ V   L K  + + EI  +AN+CP+ +D
Sbjct: 68  YYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISD 127

Query: 201 EVFALLPSLKNKRSKLSEPLNNVLSELAKVK 219
           E  +L+PSLK       + L  +L EL+ ++
Sbjct: 128 EAKSLIPSLKKME---DDELQAILDELSNLR 152

[Close]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot
Match: O15514 (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.2e-04
Identity = 31/114 (27.19%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 106 QCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETL 165
           + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L
Sbjct: 30  ETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLL 89

Query: 166 KKYGITDSEICVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKS 220
            +  +   E+  +AN+CP+T +E  AL+PSL+ +     E L  +L ++   +S
Sbjct: 90  LQKKLHKFELACLANLCPETAEESKALIPSLEGRFE--DEELQQILDDIQTKRS 139

[Close]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot
Match: Q9D7M8 (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 3.2e-04
Identity = 31/114 (27.19%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 106 QCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETL 165
           + L++ E   LL+  + Q    SA+   ++   F + L Y  R + + N E++  V   L
Sbjct: 30  ETLLNSEVHMLLEHRKQQNE--SAEDEQELSEVFMKTLNYTARFSRFKNRETIASVRSLL 89

Query: 166 KKYGITDSEICVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKS 220
            +  +   E+  +AN+CP+T +E  AL+PSL+ +     E L  +L ++   +S
Sbjct: 90  LQKKLHKFELACLANLCPETAEESKALIPSLEGRFE--DEELQQILDDIQTKRS 139

[Close]

BLAST of MELO3C007997 vs. ExPASy TrEMBL
Match: A0A1S3B2C2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.6e-113
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 220

[Close]

BLAST of MELO3C007997 vs. ExPASy TrEMBL
Match: A0A0A0KH45 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.7e-110
Identity = 211/220 (95.91%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQK+PAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDA N+F
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGD+GKGGKGANTKAS+AKEPQ+LELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDLGKGGKGANTKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYG+TDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLK KRSKLSEP+NNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220

[Close]

BLAST of MELO3C007997 vs. ExPASy TrEMBL
Match: A0A1S3B2C7 (DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.0e-109
Identity = 216/220 (98.18%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGFSVQKKPAKSSLKSSALKD    GKDDSLSKLKKGRKVQFDAQGSVDAPNSF
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKD----GKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120
           SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI
Sbjct: 61  SMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGI 120

Query: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180
           QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN
Sbjct: 121 QDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIAN 180

Query: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS
Sbjct: 181 VCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 216

[Close]

BLAST of MELO3C007997 vs. ExPASy TrEMBL
Match: A0A6J1KMD1 (DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497005 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.8e-97
Identity = 194/221 (87.78%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGF VQKKP KSSLKS A KDASLKGKDDSLSK KKGRKVQFDAQGSVDA  + 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSLASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAHINL 60

Query: 61  SMKYSGKNGDMGKGGKGAN-TKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           SMK+ GKNGD+GKGGKG N  KASV+KE Q LELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKFGGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQMV LSADPTIKIPTSFDRGLQYAKRANHYVN ESVRPVLETLKKYG+ DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           NVCPDT DEVFAL+PSLK+KRSKL+EPLNNVLSELAK+KSS
Sbjct: 181 NVCPDTIDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

[Close]

BLAST of MELO3C007997 vs. ExPASy TrEMBL
Match: A0A6J1EJD9 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.2e-96
Identity = 192/221 (86.88%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60
           MSEKGEKGF VQKKP KSSLKSSA KDASLKGKDDSLSK KKGRKVQFDAQGSVDA  + 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKYSGKNGDMGKGGKGAN-TKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+K+SGKNGD+GKGGKG N  KASV+KE Q LELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180
           IQDQM  LSADPTIKIPTSFDRGLQYAKRANHYVN E VRPVLETLKKYG+ DSEICVIA
Sbjct: 121 IQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           NVCPDTTDEVF+L+PSLK+KRSKL+EPLNNVL ELAK+KSS
Sbjct: 181 NVCPDTTDEVFSLVPSLKSKRSKLTEPLNNVLIELAKLKSS 221

[Close]

BLAST of MELO3C007997 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 156.0 bits (393), Expect = 3.5e-38
Identity = 106/225 (47.11%), Postives = 135/225 (60.00%), Query Frame = 0


Query: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFD-----AQGSVD 60
           MSEKG KG        KSSLKS   KD    GKD S +KLKKGRK+ FD     A   + 
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  APNSFSMKYSGKNGDMGKGGKGANTKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQ 120
             +S    +       GK  K   TK+S      S ELK   +LP+N   +C+MDCEA Q
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDK--PTKSS-KNSLHSFELK---DLPEN--AECMMDCEAFQ 120

Query: 121 LLQGIQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEI 180
           +L GI+ Q+V LS DP+IKIP S+DR L Y +   HY N +SVR VLE LK YGI+D E+
Sbjct: 121 ILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGEM 180

Query: 181 CVIANVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 221
           CVIAN   ++ DEV A +PSLK K+  +++PL + L EL+K+K S
Sbjct: 181 CVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

[Close]

BLAST of MELO3C007997 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 98.2 bits (243), Expect = 8.7e-21
Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 86  KEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVFLSADPTIKIPTSFDRGLQY 145
           +E  + ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ LQY
Sbjct: 5   EEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQY 64

Query: 146 AKRANHYVNAESVRPVLETLKKYGITDSEICVIANVCPDTTDEVFALLPSLKNK-RSKLS 205
            KR + Y N ++VR V E L ++ +T+ E+CV+ N+CP+T +E  A++PSLK K R+   
Sbjct: 65  VKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHDD 124

Query: 206 EPLNNVLSELAKVK 219
           E +  +L++L+ VK
Sbjct: 125 EAIEKMLNDLSLVK 135

The following BLAST results are available for this feature:

BLAST of MELO3C007997 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440955.1	5.3e-113	100.00	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis m...	[more]
XP_004134991.2	1.6e-109	95.91	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 [Cucumis sativus] >XP...	[more]
XP_008440960.1	2.1e-109	98.18	PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis m...	[more]
XP_011658103.1	6.3e-106	94.09	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 [Cucumis sativus] >XP...	[more]
XP_038881037.1	1.2e-104	92.73	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Benincasa hispi...	[more]

BLAST of MELO3C007997 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBA5	4.9e-37	47.11	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
O48890	1.2e-19	38.06	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54S04	2.0e-06	27.81	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]
O15514	3.2e-04	27.19	DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens OX=9606 GN=POLR2D PE...	[more]
Q9D7M8	3.2e-04	27.19	DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus OX=10090 GN=Polr2d P...	[more]

BLAST of MELO3C007997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2C2	2.6e-113	100.00	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A0A0KH45	7.7e-110	95.91	RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4...	[more]
A0A1S3B2C7	1.0e-109	98.18	DNA-directed RNA polymerases IV and V subunit 4 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A6J1KMD1	5.8e-97	87.78	DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EJD9	2.2e-96	86.88	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita mos...	[more]

BLAST of MELO3C007997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15950.1	3.5e-38	47.11	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	8.7e-21	38.06	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 100..219 e-value: 1.4E-5 score: 32.4
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 108..217 e-value: 3.5E-10 score: 40.3
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 83..220 e-value: 1.7E-29 score: 104.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..48
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 1..220
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 1..220
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 86..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007997.1	MELO3C007997.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0000166	nucleotide binding