MELO3C006461.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C006461.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr06: 3839176 .. 3839803 (+)
RNA-Seq ExpressionMELO3C006461.jh1
SyntenyMELO3C006461.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAAACTTGTCGAAAAGGAAAGAAAAAGAAAACAGAAACAAAAGGTGGCAAGAAATATGAAATTTCTCCATACAGCTCTAGCAATGGCTATCCTTCTTCTTTTGCAGCTTCAGCCAAACTTAGCTGGTAGGACTCTGCATGAGAAGCCACCAATGGTGAGAAGAATGGAGCTGAACCTGAAGCTGCAGTCTCTTCAGAGAGTCAGCGTACCGCCCTCTGGCCCTTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCTGGATGTCCCCTAAAAGAGAGGCACTATGTTGCCGGCCGTTCCACTCGACGTCCTAGCACTCACCGACGCCATGCTGCCCCTGCTCGTGTCGTGCAGGCTCTGGTCTGAAGTTTTGATATTCATCTTTTTCCTACTTCCATTCATAATCCAAAAAGTTGGTTTATTTTGGCCCTTGGATTCTTGGAAGCTAGAAGGCAGTTAGCTGTTTTGTAACATATTGAATTCATTGCAAGATTGTTTTGTTATTTGTGTCCTTATTTGTAAATAATGTAGTAAGCCCAAAATGGCAAAGTCTCCAATGTCTATGGAAATTGAATTATATCGTTTCAACTAAAATAAGTCATTTATATGACAAGCATTTGAACA

mRNA sequence

CATTAAACTTGTCGAAAAGGAAAGAAAAAGAAAACAGAAACAAAAGGTGGCAAGAAATATGAAATTTCTCCATACAGCTCTAGCAATGGCTATCCTTCTTCTTTTGCAGCTTCAGCCAAACTTAGCTGGTAGGACTCTGCATGAGAAGCCACCAATGGTGAGAAGAATGGAGCTGAACCTGAAGCTGCAGTCTCTTCAGAGAGTCAGCGTACCGCCCTCTGGCCCTTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCTGGATGTCCCCTAAAAGAGAGGCACTATGTTGCCGGCCGTTCCACTCGACGTCCTAGCACTCACCGACGCCATGCTGCCCCTGCTCGTGTCGTGCAGGCTCTGGTCTGAAGTTTTGATATTCATCTTTTTCCTACTTCCATTCATAATCCAAAAAGTTGGTTTATTTTGGCCCTTGGATTCTTGGAAGCTAGAAGGCAGTTAGCTGTTTTGTAACATATTGAATTCATTGCAAGATTGTTTTGTTATTTGTGTCCTTATTTGTAAATAATGTAGTAAGCCCAAAATGGCAAAGTCTCCAATGTCTATGGAAATTGAATTATATCGTTTCAACTAAAATAAGTCATTTATATGACAAGCATTTGAACA

Coding sequence (CDS)

ATGAAATTTCTCCATACAGCTCTAGCAATGGCTATCCTTCTTCTTTTGCAGCTTCAGCCAAACTTAGCTGGTAGGACTCTGCATGAGAAGCCACCAATGGTGAGAAGAATGGAGCTGAACCTGAAGCTGCAGTCTCTTCAGAGAGTCAGCGTACCGCCCTCTGGCCCTTCCGGTTGCACCTTCATTCCTGGCACCAACGGCCCTGGATGTCCCCTAAAAGAGAGGCACTATGTTGCCGGCCGTTCCACTCGACGTCCTAGCACTCACCGACGCCATGCTGCCCCTGCTCGTGTCGTGCAGGCTCTGGTCTGA

Protein sequence

MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV
Homology
BLAST of MELO3C006461.jh1 vs. NCBI nr
Match: TYK17267.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 203 bits (516), Expect = 1.08e-65
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60
           MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT
Sbjct: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60

Query: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV
Sbjct: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

BLAST of MELO3C006461.jh1 vs. NCBI nr
Match: KAA0049291.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 2.95e-59
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 10  MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 69
           MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 1   MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 60

Query: 70  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV
Sbjct: 61  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

BLAST of MELO3C006461.jh1 vs. NCBI nr
Match: KGN56901.1 (hypothetical protein Csa_009866 [Cucumis sativus])

HSP 1 Score: 172 bits (436), Expect = 1.34e-53
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 12  ILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71
           +LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP
Sbjct: 4   LLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 63

Query: 72  LKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           LKERHYVA  ST+RPSTHRR+AAPARVVQ LV
Sbjct: 64  LKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

BLAST of MELO3C006461.jh1 vs. NCBI nr
Match: KAG6597386.1 (hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028845.1 hypothetical protein SDJN02_10027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134 bits (336), Expect = 2.67e-38
Identity = 71/96 (73.96%), Postives = 77/96 (80.21%), Query Frame = 0

Query: 12  ILLLLQLQPNLAGRTLHEKPPMVRR----MELNLKLQSLQRVSVPPSGPSGCTFIPGTNG 71
           IL+LLQL PN AGRTL EKP MVRR    MEL LKLQSLQRV VPPSGPSGCTFIPGTNG
Sbjct: 4   ILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNG 63

Query: 72  PGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           PGCPL+ RHY    S +RPST RR+A P RVV+AL+
Sbjct: 64  PGCPLEVRHYAGNGSKQRPSTLRRYATPVRVVEALI 99

BLAST of MELO3C006461.jh1 vs. NCBI nr
Match: KAG7018772.1 (hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119 bits (297), Expect = 1.54e-32
Identity = 59/74 (79.73%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 18 LQPNLAGRTLHEKPPMVRRMELNLKL--QSLQRVSVPPSGPSGCTFIPGTNGPGCPLKER 77
          L PN+AGRTLHE P MVRR EL LKL  QSLQRVSVPPSGPSGCTFIPGTNGPGCP K R
Sbjct: 12 LHPNIAGRTLHENPSMVRRTELKLKLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCPQKVR 71

Query: 78 HYVAGRSTRRPSTH 89
          HY    STRRPS H
Sbjct: 72 HYTINHSTRRPSAH 85

BLAST of MELO3C006461.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CZY7 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001200 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 5.21e-66
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60
           MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT
Sbjct: 1   MKFLHTALAMAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCT 60

Query: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV
Sbjct: 61  FIPGTNGPGCPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103

BLAST of MELO3C006461.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U6N3 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005320 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 1.43e-59
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 10  MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 69
           MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG
Sbjct: 1   MAILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPG 60

Query: 70  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV
Sbjct: 61  CPLKERHYVAGRSTRRPSTHRRHAAPARVVQALV 94

BLAST of MELO3C006461.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LA00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 6.50e-54
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0

Query: 12  ILLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 71
           +LLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP
Sbjct: 4   LLLLLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIPGTNGPGCP 63

Query: 72  LKERHYVAGRSTRRPSTHRRHAAPARVVQALV 103
           LKERHYVA  ST+RPSTHRR+AAPARVVQ LV
Sbjct: 64  LKERHYVANHSTQRPSTHRRYAAPARVVQNLV 95

BLAST of MELO3C006461.jh1 vs. ExPASy TrEMBL
Match: A0A1R3G9P6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27576 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.22e-15
Identity = 45/90 (50.00%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 1  MKFLHTALAMAILL-LLQLQPNLAGRTLHEKPPMVRRMELNLKLQSLQRVSVPPSGPSGC 60
          M+ L  ALA  +LL LLQ+Q   A R LHE+  +V++++L   LQSLQ+  VPPS  S C
Sbjct: 1  MRVLSIALAALVLLFLLQIQTLNASRLLHEESKLVKKLDL---LQSLQKGPVPPSEGSSC 60

Query: 61 TFIPGTNGPGCPLKERHYVAGRSTRRPSTH 89
          T IPG+ GPGCPL E HY  G +  R  T+
Sbjct: 61 TNIPGSGGPGCPLNEMHYAGGAALPRAGTY 87

BLAST of MELO3C006461.jh1 vs. ExPASy TrEMBL
Match: W9QW23 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.99e-14
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 8  LAMAILLLLQL---QPNLAGRTLHE-KPPMVRRMELNLKLQSLQRVSVPPSGPSGCTFIP 67
          +A+AILLLL L   + + A R L++ K  +V+  +L L  QSL R  VPPSGPSGCT+IP
Sbjct: 6  IALAILLLLVLVHSEQSSASRVLNDHKEGLVKEEKLGLGFQSLPRGPVPPSGPSGCTYIP 65

Query: 68 GTNGPGCPLKERHYVAGRST 83
          G+ GP CPL E+HY    +T
Sbjct: 66 GSGGPNCPLGEKHYAGDHAT 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK17267.11.08e-65100.00putative transmembrane protein [Cucumis melo var. makuwa][more]
KAA0049291.12.95e-59100.00putative transmembrane protein [Cucumis melo var. makuwa][more]
KGN56901.11.34e-5393.48hypothetical protein Csa_009866 [Cucumis sativus][more]
KAG6597386.12.67e-3873.96hypothetical protein SDJN03_10566, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7018772.11.54e-3279.73hypothetical protein SDJN02_20645, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CZY75.21e-66100.00Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7U6N31.43e-59100.00Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0LA006.50e-5493.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G142940 PE=4 SV=1[more]
A0A1R3G9P61.22e-1550.00Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27576 PE=4 ... [more]
W9QW231.99e-1451.25Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017421 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 4..99
NoneNo IPR availablePANTHERPTHR33592:SF5TRANSMEMBRANE PROTEINcoord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006461.jh1.t1MELO3C006461.jh1.t1mRNA