Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATCGAACAACGCAAGACTTCATGATGTTATAGATGATCCATAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGGCGTGTTCGAGTAGAAGAAGCTGAACTCAATGAAGTTTACCATAATGTGGAAGAAGCGCCTCCTACGACACAGACACAGAGCCAAACTCGTTATAGTAGTCCGATGATTATGATTCAGGGGTTGGTCTATCGTCTTCATACACGGATGTCAGTCCGTCAACTTCTTACATGCATGGACACGAACGTGACTATGGGGAACATAACGAATATCTGTATCATGATGCACATGTAGAAGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGATCGAGAACAACATAGGGTTCAGAGTCAACGTCCACAACCAGCTCGAAATCGACGACGTCGGAGTTGTAGAACACATTGA
mRNA sequence
AGATCGAACAACGCAAGACTTCATGATGTTATAGATGATCCATAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGGCGTGTTCGAGTAGAAGAAGCTGAACTCAATGAAGTTTACCATAATGTGGAAGAAGCGCCTCCTACGACACAGACACAGAGCCAAACTCGTTATAGGGTTGGTCTATCGTCTTCATACACGGATGTCAGTCCGTCAACTTCTTACATGCATGGACACGAACGTGACTATGGGGAACATAACGAATATCTGTATCATGATGCACATGTAGAAGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGATCGAGAACAACATAGGGTTCAGAGTCAACGTCCACAACCAGCTCGAAATCGACGACGTCGGAGTTGTAGAACACATTGA
Coding sequence (CDS)
ATGGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCACTAGTTCATAGGGGGCGTGTTCGAGTAGAAGAAGCTGAACTCAATGAAGTTTACCATAATGTGGAAGAAGCGCCTCCTACGACACAGACACAGAGCCAAACTCGTTATAGGGTTGGTCTATCGTCTTCATACACGGATGTCAGTCCGTCAACTTCTTACATGCATGGACACGAACGTGACTATGGGGAACATAACGAATATCTGTATCATGATGCACATGTAGAAGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGATCGAGAACAACATAGGGTTCAGAGTCAACGTCCACAACCAGCTCGAAATCGACGACGTCGGAGTTGTAGAACACATTGA
Protein sequence
MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRYRVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDRQEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH
Homology
BLAST of MELO3C002794 vs. NCBI nr
Match:
TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 198.7 bits (504), Expect = 3.0e-47
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRYRVGLSSSYT 60
MEEIHN+YDLPIVPP +HRGRVRVEEAEL+EVYH V+E P TQTQSQT Y VG SSSY
Sbjct: 60 MEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQSQTGYGVGPSSSYM 119
Query: 61 DVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDRQEYQQEPENQEDREQHRVQSQRPQPA 120
DV PSTSYMHGHER Y EHNEYLYH+A +VSDRQEYQQEPENQEDREQHRVQS+R QPA
Sbjct: 120 DVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPA 179
Query: 121 RNRRRRSCRTH 132
+NRRR C TH
Sbjct: 180 QNRRRPGCGTH 190
BLAST of MELO3C002794 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 191.4 bits (485), Expect = 4.8e-45
Identity = 109/157 (69.43%), Postives = 114/157 (72.61%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------- 60
MEEIHNMYDLPIVPP VHRG VRVEEAEL++VYHNVEE P TTQTQSQT Y
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 61 -----------------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSSY DVSPSTSYMHGH R YGEHNEYLYH+A +VSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEPENQEDREQHRVQS+R QP RNRRR C TH
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of MELO3C002794 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 188.3 bits (477), Expect = 4.1e-44
Identity = 108/157 (68.79%), Postives = 113/157 (71.97%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------- 60
MEEIHNMYDLPIVPP VHRG VRVEEAEL++VYHNVEE P TTQTQSQT Y
Sbjct: 54 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113
Query: 61 -----------------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSSY DVSPSTSYMHGH R YGEHNEYLYH+A +VSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEPENQEDREQHRVQS+R QP RNRR C TH
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of MELO3C002794 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 179.5 bits (454), Expect = 1.9e-41
Identity = 103/157 (65.61%), Postives = 112/157 (71.34%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRYR-------- 60
ME+IHN+YDLPIVPP VHR R RVEEAEL+EVYHNVEE PPTTQTQSQT Y
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403
Query: 61 ------------------VGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSY DV PSTSYM+GH R YGEHNEYLYH+A +VSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEP+NQEDREQHRVQS+R QPARNR+ C TH
Sbjct: 464 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of MELO3C002794 vs. NCBI nr
Match:
KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 177.2 bits (448), Expect = 9.4e-41
Identity = 101/151 (66.89%), Postives = 106/151 (70.20%), Query Frame = 0
Query: 7 MYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------------- 66
MYDLPIVPP VHRGRVRVEE EL+EVYHNVEE PPTTQTQSQT Y
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 67 -----------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDRQEYQQE 126
+G SSY DV PS SYMHGH R YGEHNEYLYH+A +VSDRQEYQQE
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQE 120
Query: 127 PENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
PENQEDREQHRVQS+R QP RNRR SC TH
Sbjct: 121 PENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of MELO3C002794 vs. ExPASy TrEMBL
Match:
A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 1.5e-47
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRYRVGLSSSYT 60
MEEIHN+YDLPIVPP +HRGRVRVEEAEL+EVYH V+E P TQTQSQT Y VG SSSY
Sbjct: 60 MEEIHNIYDLPIVPPPIHRGRVRVEEAELDEVYHKVKEVHPMTQTQSQTGYGVGPSSSYM 119
Query: 61 DVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDRQEYQQEPENQEDREQHRVQSQRPQPA 120
DV PSTSYMHGHER Y EHNEYLYH+A +VSDRQEYQQEPENQEDREQHRVQS+R QPA
Sbjct: 120 DVDPSTSYMHGHERGYEEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPA 179
Query: 121 RNRRRRSCRTH 132
+NRRR C TH
Sbjct: 180 QNRRRPGCGTH 190
BLAST of MELO3C002794 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 109/157 (69.43%), Postives = 114/157 (72.61%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------- 60
MEEIHNMYDLPIVPP VHRG VRVEEAEL++VYHNVEE P TTQTQSQT Y
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 61 -----------------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSSY DVSPSTSYMHGH R YGEHNEYLYH+A +VSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEPENQEDREQHRVQS+R QP RNRRR C TH
Sbjct: 186 QEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of MELO3C002794 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 108/157 (68.79%), Postives = 113/157 (71.97%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------- 60
MEEIHNMYDLPIVPP VHRG VRVEEAEL++VYHNVEE P TTQTQSQT Y
Sbjct: 54 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113
Query: 61 -----------------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSSY DVSPSTSYMHGH R YGEHNEYLYH+A +VSDR
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGYGEHNEYLYHEAPADVSDR 173
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEPENQEDREQHRVQS+R QP RNRR C TH
Sbjct: 174 QEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of MELO3C002794 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 9.2e-42
Identity = 103/157 (65.61%), Postives = 112/157 (71.34%), Query Frame = 0
Query: 1 MEEIHNMYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRYR-------- 60
ME+IHN+YDLPIVPP VHR R RVEEAEL+EVYHNVEE PPTTQTQSQT Y
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403
Query: 61 ------------------VGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDR 120
VG SSY DV PSTSYM+GH R YGEHNEYLYH+A +VSDR
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAPTDVSDR 463
Query: 121 QEYQQEPENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
QEYQQEP+NQEDREQHRVQS+R QPARNR+ C TH
Sbjct: 464 QEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of MELO3C002794 vs. ExPASy TrEMBL
Match:
A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 4.6e-41
Identity = 101/151 (66.89%), Postives = 106/151 (70.20%), Query Frame = 0
Query: 7 MYDLPIVPPLVHRGRVRVEEAELNEVYHNVEEAPPTTQTQSQTRY--------------- 66
MYDLPIVPP VHRGRVRVEE EL+EVYHNVEE PPTTQTQSQT Y
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 67 -----------RVGLSSSYTDVSPSTSYMHGHERDYGEHNEYLYHDAHVEVSDRQEYQQE 126
+G SSY DV PS SYMHGH R YGEHNEYLYH+A +VSDRQEYQQE
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDRQEYQQE 120
Query: 127 PENQEDREQHRVQSQRPQPARNRRRRSCRTH 132
PENQEDREQHRVQS+R QP RNRR SC TH
Sbjct: 121 PENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| TYK22189.1 | 3.0e-47 | 80.15 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062642.1 | 4.8e-45 | 69.43 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 4.1e-44 | 68.79 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 1.9e-41 | 65.61 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0049532.1 | 9.4e-41 | 66.89 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DFZ9 | 1.5e-47 | 80.15 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 2.3e-45 | 69.43 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 2.0e-44 | 68.79 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 9.2e-42 | 65.61 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5D3CXX3 | 4.6e-41 | 66.89 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
