MELO3C002224 (gene) Melon (DHL92) v4

Overview
NameMELO3C002224
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDynein light chain, type 1/2
Locationchr12: 24070106 .. 24071521 (-)
RNA-Seq ExpressionMELO3C002224
SyntenyMELO3C002224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAACCCACAAACCAGCAGCGTAGTTTAGCACCTCCTGACCATGATTCTCCTCCCCTTAAACCCATTTTCAGAGCTACTTCCTCTGCTTCCATAGCTAACAATCATTCCACGCTTTTAAAGCTTGATTCCTCCATAGCTGCTGTTCCTAATCCTTCCTCCTTATCCACCCATATCCCGTTTTCCAAACTTCACAGTCAAGCTGGGTTTTCATCTCAAAGATCAAAGAACTTGAACCCACCTCCAGCTCCGACTGTTTCTTCTATGCTGAAATCAAAACCCCACCTCCAAAAAATTCCTTCTGGTGGGGATGAGAAATTCAGTAAGGTGTGTAGAGAGTTGGGTAGGAAGAAGTTTTTTGATGATAAGAAGGAAACCAATGATGGGTTTGATAAGAAAGGTCTCTGTCTTGTGGTGAAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAATTGAAAGAGCCTCAAAAGGGGCAAAAGATTGTCAGTTTGAGGCCAACAGTTTCTTTACTTCGAAAGAGTGGGAGAAGGAAATCATTTGCTGTTTCACAAGTTGAATTGAGTGATATTTTTGCCAAAAATGGTGTGAAAGTGGTTTCTGTTGATATGCAACCAGCTATGCAGATTCATGCTGTGGATTGTGCAAGAAAGACTCATGACAGTATGGAGAAGTTCACTTCCAAAACTCTTGCTTTATCTCTCAAAAGGGTAATTAGTTTAAGGGTTATGTTATGTATAAATCTGTGCAAGTTATTGAAATGAATTAGCTATTAACTTTTCTTGTTTGATTTCTTGCTTGTGGTTTTCCAGGAATTTGATGGGGTGTATGGTCCGGCTTGGCACTGCATCGTGGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTATATTTCTCACTGGACCAAAAACTGTATATTCTATTGTTCAAAACGTCCGTACAAAGAGCTGATTGAGATTGAAGTAGATGTCCAAAACACGGCTGGGAAATCCAATAAATTTGGCATATTAGAGTTTAAGAGAGGTAAAAGAGGCCATCCATCCGAATACATGTACATTGAGTATGTTAAGAAACACACCAACAATACAGAATATTCACTACAATATGTTTAGAGATCCCTTACAAGCTGTTTACTGAACAATTTCATTGCAATTATTGAGGTTTAGTGAGAGAATAACCCTTACTTTTACAGCTCAAAGACTCGATTCTCTCTACATATACTTCTCCAATTCCACTAGTATTTCTGTTTAAATTGCATGTACAATCTCTCTATTTGCTGCAAAGATTGACCGATTAAGGCTTAATGGTCTGTTATACATCAATAGCAAGAATGTTTTACAAGACTCAAGGCTAAATTATGCATTTTTGTTTCTTGATCTGAGATGTGTTTATTATAGAG

mRNA sequence

ATGGCGAAACCCACAAACCAGCAGCGTAGTTTAGCACCTCCTGACCATGATTCTCCTCCCCTTAAACCCATTTTCAGAGCTACTTCCTCTGCTTCCATAGCTAACAATCATTCCACGCTTTTAAAGCTTGATTCCTCCATAGCTGCTGTTCCTAATCCTTCCTCCTTATCCACCCATATCCCGTTTTCCAAACTTCACAGTCAAGCTGGGTTTTCATCTCAAAGATCAAAGAACTTGAACCCACCTCCAGCTCCGACTGTTTCTTCTATGCTGAAATCAAAACCCCACCTCCAAAAAATTCCTTCTGGTGGGGATGAGAAATTCAGTAAGGTGTGTAGAGAGTTGGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAATTGAAAGAGCCTCAAAAGGGGCAAAAGATTGTCAGTTTGAGGCCAACAGTTTCTTTACTTCGAAAGAGTGGGAGAAGGAAATCATTTGCTGTTTCACAAGTTGAATTGAGTGATATTTTTGCCAAAAATGGTGTGAAAGTGGTTTCTGTTGATATGCAACCAGCTATGCAGATTCATGCTGTGGATTGTGCAAGAAAGACTCATGACAGTATGGAGAAGTTCACTTCCAAAACTCTTGCTTTATCTCTCAAAAGGGAATTTGATGGGGTGTATGGTCCGGCTTGGCACTGCATCGTGGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTATATTTCTCACTGGACCAAAAACTGTATATTCTATTGTTCAAAACGTCCGTACAAAGAGCTGATTGAGATTGAAGTAGATGTCCAAAACACGGCTGGGAAATCCAATAAATTTGGCATATTAGAGTTTAAGAGAGGTAAAAGAGGCCATCCATCCGAATACATGTACATTGAGTATGTTAAGAAACACACCAACAATACAGAATATTCACTACAATATGTTTAGAGATCCCTTACAAGCTGTTTACTGAACAATTTCATTGCAATTATTGAGGTTTAGTGAGAGAATAACCCTTACTTTTACAGCTCAAAGACTCGATTCTCTCTACATATACTTCTCCAATTCCACTAGTATTTCTGTTTAAATTGCATGTACAATCTCTCTATTTGCTGCAAAGATTGACCGATTAAGGCTTAATGGTCTGTTATACATCAATAGCAAGAATGTTTTACAAGACTCAAGGCTAAATTATGCATTTTTGTTTCTTGATCTGAGATGTGTTTATTATAGAG

Coding sequence (CDS)

ATGGCGAAACCCACAAACCAGCAGCGTAGTTTAGCACCTCCTGACCATGATTCTCCTCCCCTTAAACCCATTTTCAGAGCTACTTCCTCTGCTTCCATAGCTAACAATCATTCCACGCTTTTAAAGCTTGATTCCTCCATAGCTGCTGTTCCTAATCCTTCCTCCTTATCCACCCATATCCCGTTTTCCAAACTTCACAGTCAAGCTGGGTTTTCATCTCAAAGATCAAAGAACTTGAACCCACCTCCAGCTCCGACTGTTTCTTCTATGCTGAAATCAAAACCCCACCTCCAAAAAATTCCTTCTGGTGGGGATGAGAAATTCAGTAAGGTGTGTAGAGAGTTGGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAATTGAAAGAGCCTCAAAAGGGGCAAAAGATTGTCAGTTTGAGGCCAACAGTTTCTTTACTTCGAAAGAGTGGGAGAAGGAAATCATTTGCTGTTTCACAAGTTGA

Protein sequence

MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELGEGGEGGEGGEGIERASKGAKDCQFEANSFFTSKEWEKEIICCFTS
Homology
BLAST of MELO3C002224 vs. NCBI nr
Match: XP_008437777.1 (PREDICTED: uncharacterized protein LOC103483107 [Cucumis melo] >TYJ99122.1 Dynein light chain, type 1/2 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60
           MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI
Sbjct: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60

Query: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG
Sbjct: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 116

BLAST of MELO3C002224 vs. NCBI nr
Match: XP_004152543.3 (uncharacterized protein LOC101220241 [Cucumis sativus] >KAE8652578.1 hypothetical protein Csa_013326 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 108/117 (92.31%), Postives = 109/117 (93.16%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDH-DSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTH 60
           MAKPTNQ RSLAPPDH DSPPLKPIFRATSSASIANNHS L KLDSSIAAVPNPSSLSTH
Sbjct: 1   MAKPTNQHRSLAPPDHDDSPPLKPIFRATSSASIANNHSMLSKLDSSIAAVPNPSSLSTH 60

Query: 61  IPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           IPFS LHSQ GFSSQRSKNLNPPPA +VSSMLKSKPHLQKIPSGGDEK SKVCRELG
Sbjct: 61  IPFSTLHSQTGFSSQRSKNLNPPPALSVSSMLKSKPHLQKIPSGGDEKLSKVCRELG 117

BLAST of MELO3C002224 vs. NCBI nr
Match: XP_038894695.1 (uncharacterized protein LOC120083162 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 9.2e-38
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60
           MAKPTNQ R LAPPDHDSPPLKP FRA SSA +ANNHST  KLDS+IAA PNPS LS+HI
Sbjct: 1   MAKPTNQLRILAPPDHDSPPLKPPFRAPSSAFMANNHSTPSKLDSAIAAAPNPSPLSSHI 60

Query: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           PFS    + GFSSQRS NLNPPPA +VSSM+KSKPHLQK  SGGDEK SKVC+ELG
Sbjct: 61  PFST--QKTGFSSQRSMNLNPPPALSVSSMVKSKPHLQKSASGGDEKLSKVCKELG 114

BLAST of MELO3C002224 vs. NCBI nr
Match: XP_023520376.1 (uncharacterized protein LOC111783690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 7.7e-37
Identity = 99/161 (61.49%), Postives = 112/161 (69.57%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAV---PNPSSLS 60
           MAKPTNQ R LAPPD DSPPLKP FRA  SAS+ANNHST  KLDS+IAA    PNPS LS
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASPPPNPSPLS 60

Query: 61  THIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELGE 120
            HIPFSKLH Q GFSSQ+ KN NPPPA TVS+M+KSKPHLQKI SG DEK SK+C+E+G 
Sbjct: 61  NHIPFSKLHRQPGFSSQKPKNSNPPPALTVSAMVKSKPHLQKIASGEDEKLSKLCKEMGT 120

Query: 121 G---GEGGEGGEGIERASKGAKDCQFEANSFFTSKEWEKEI 156
                E  E  +G++  SK           +   KE EKE+
Sbjct: 121 KKFFDEKKEANKGVDDDSKAL---------YLVVKEKEKEL 152

BLAST of MELO3C002224 vs. NCBI nr
Match: KAG7019845.1 (hypothetical protein SDJN02_18810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 2.3e-36
Identity = 98/163 (60.12%), Postives = 111/163 (68.10%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAV-----PNPSS 60
           MAKPTNQ R LAPPD DSPPLKP FRA  SAS+ANNHST  KLDS+IAA      PNPS 
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPPNPSP 60

Query: 61  LSTHIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCREL 120
           LS HIPFSKLH Q GFSSQ+ KN NPPP  TV +M+KSKPHLQKI SGGDEK SK+C+E+
Sbjct: 61  LSNHIPFSKLHRQPGFSSQKPKNSNPPPPLTVPTMVKSKPHLQKIASGGDEKLSKLCKEM 120

Query: 121 GEG---GEGGEGGEGIERASKGAKDCQFEANSFFTSKEWEKEI 156
           G      E  E  +G++  SK           +   KE EKE+
Sbjct: 121 GTKKFFDEKKEANKGVDDDSKAL---------YLVVKEKEKEL 154

BLAST of MELO3C002224 vs. ExPASy TrEMBL
Match: A0A5D3BH95 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003270 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.2e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60
           MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI
Sbjct: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60

Query: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG
Sbjct: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 116

BLAST of MELO3C002224 vs. ExPASy TrEMBL
Match: A0A1S3AVF4 (uncharacterized protein LOC103483107 OS=Cucumis melo OX=3656 GN=LOC103483107 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.2e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60
           MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI
Sbjct: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTHI 60

Query: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG
Sbjct: 61  PFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 116

BLAST of MELO3C002224 vs. ExPASy TrEMBL
Match: A0A0A0LW58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045690 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 108/117 (92.31%), Postives = 109/117 (93.16%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDH-DSPPLKPIFRATSSASIANNHSTLLKLDSSIAAVPNPSSLSTH 60
           MAKPTNQ RSLAPPDH DSPPLKPIFRATSSASIANNHS L KLDSSIAAVPNPSSLSTH
Sbjct: 1   MAKPTNQHRSLAPPDHDDSPPLKPIFRATSSASIANNHSMLSKLDSSIAAVPNPSSLSTH 60

Query: 61  IPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 117
           IPFS LHSQ GFSSQRSKNLNPPPA +VSSMLKSKPHLQKIPSGGDEK SKVCRELG
Sbjct: 61  IPFSTLHSQTGFSSQRSKNLNPPPALSVSSMLKSKPHLQKIPSGGDEKLSKVCRELG 117

BLAST of MELO3C002224 vs. ExPASy TrEMBL
Match: A0A6J1E7P6 (uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC111431561 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.9e-36
Identity = 98/162 (60.49%), Postives = 111/162 (68.52%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAV----PNPSSL 60
           MAKPTNQ R LAPPD DSPPLKP FRA  SAS+ANNHST  KLDS+IAA     PNPS L
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPNPSPL 60

Query: 61  STHIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELG 120
           S HIPFSKLH Q+ FSSQ+ KN NPPP  TVS+M+KSKPHLQKI SGGDEK SK+C+E+G
Sbjct: 61  SNHIPFSKLHRQSDFSSQKPKNPNPPPPLTVSTMVKSKPHLQKIASGGDEKLSKLCKEMG 120

Query: 121 EG---GEGGEGGEGIERASKGAKDCQFEANSFFTSKEWEKEI 156
                 E  E  +G+   SK           +   KE EKE+
Sbjct: 121 TKKFFDEKKEANKGVNDDSKAL---------YLVVKEKEKEL 153

BLAST of MELO3C002224 vs. ExPASy TrEMBL
Match: A0A6J1KET7 (uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.6e-35
Identity = 95/161 (59.01%), Postives = 110/161 (68.32%), Query Frame = 0

Query: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSIAAV---PNPSSLS 60
           MAKPTNQ R LAPPD DSPPLKP FRA  SAS+ANNHST  KLDS+IAA    PNPS LS
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASSPPNPSPLS 60

Query: 61  THIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELGE 120
            HIPFS+LH Q G  SQ+ KN NPPP+ TV +M+KSKPHLQKI SGGDEK SK+C+E+G 
Sbjct: 61  NHIPFSELHRQPGCLSQKPKNSNPPPSLTVPTMVKSKPHLQKIASGGDEKLSKLCKEMGT 120

Query: 121 G---GEGGEGGEGIERASKGAKDCQFEANSFFTSKEWEKEI 156
                E  E  +G++  SK           +   KE EKE+
Sbjct: 121 KKFFDEKKEANKGVDDDSKAL---------YLVVKEKEKEL 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008437777.11.3e-55100.00PREDICTED: uncharacterized protein LOC103483107 [Cucumis melo] >TYJ99122.1 Dynei... [more]
XP_004152543.38.8e-4992.31uncharacterized protein LOC101220241 [Cucumis sativus] >KAE8652578.1 hypothetica... [more]
XP_038894695.19.2e-3877.59uncharacterized protein LOC120083162 [Benincasa hispida][more]
XP_023520376.17.7e-3761.49uncharacterized protein LOC111783690 [Cucurbita pepo subsp. pepo][more]
KAG7019845.12.3e-3660.12hypothetical protein SDJN02_18810, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A5D3BH956.2e-56100.00Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3AVF46.2e-56100.00uncharacterized protein LOC103483107 OS=Cucumis melo OX=3656 GN=LOC103483107 PE=... [more]
A0A0A0LW584.3e-4992.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045690 PE=4 SV=1[more]
A0A6J1E7P61.9e-3660.49uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC1114315... [more]
A0A6J1KET74.6e-3559.01uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002224.1MELO3C002224.1mRNA