MELO3C002147 (gene) Melon (DHL92) v4

Overview
NameMELO3C002147
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionUnknown protein
Locationchr12: 24601968 .. 24602701 (-)
RNA-Seq ExpressionMELO3C002147
SyntenyMELO3C002147
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGCTTTTCCCATTTCCTCACCCAACTTCCATCCTTCCCTCCCTTCTTACGTCTCGTTCTCTCTTATTATATAAATCCCCTCGCCTTCTTAAACCTTTCTCCGTTCGTTCTACACATCATTCCAACCGATTCTTCGACTTAGGGCTTCTTTTTTTTTTTTCCTTTTTCTTTTTCTTTTTCTTTTTGGGTTTGTTGGGATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAGAAGGAGATTGTTTCCGGTAGAGATATTTTGGGGCTTATTTCGTCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTAGTTTATGTAAATATTGCTGTTCTTAATTTTTAATTAGAGAGGTTTTTGGTTTCTGGATTTTGAATTTTGTATATTACTTATCTTTCTCTTTCTTATAATTTATAGTATGATATTACTCAAACTCTCGAATTCCTTCGAGACTGTTCATATGGAGAATATAAAATTTCTTAGATAATTATTCCAAAGTTGGTTTGTTTGAACTAAAAGAAGAGGAAATTTTCGATTGTTCATCTT

mRNA sequence

GCGCTTTTCCCATTTCCTCACCCAACTTCCATCCTTCCCTCCCTTCTTACGTCTCGTTCTCTCTTATTATATAAATCCCCTCGCCTTCTTAAACCTTTCTCCGTTCGTTCTACACATCATTCCAACCGATTCTTCGACTTAGGGCTTCTTTTTTTTTTTTCCTTTTTCTTTTTCTTTTTCTTTTTGGGTTTGTTGGGATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAGAAGGAGATTGTTTCCGGTAGAGATATTTTGGGGCTTATTTCGTCTCCCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTAGTTTATGTAAATATTGCTGTTCTTAATTTTTAATTAGAGAGGTTTTTGGTTTCTGGATTTTGAATTTTGTATATTACTTATCTTTCTCTTTCTTATAATTTATAGTATGATATTACTCAAACTCTCGAATTCCTTCGAGACTGTTCATATGGAGAATATAAAATTTCTTAGATAATTATTCCAAAGTTGGTTTGTTTGAACTAAAAGAAGAGGAAATTTTCGATTGTTCATCTT

Coding sequence (CDS)

ATGGAGATCGATTCGGATATGAGAGAGAGGAACAGTACGGAGAAGATTGAAGTTCCGTTTCCTGTTCATAGTCAGGTGAGGAAGATCAAAGAGGAATCCGAGACGATCATGGATTGGCGACCTGGACAACCGGAGATCAGACCGCCGACCGCCGCCTTCCGCCAGATCTCTCGCTCGCCGCTTGGAATCTCCGGCCGCCCTATTTCGGTGGGGGATTCGTAG

Protein sequence

MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGDS
Homology
BLAST of MELO3C002147 vs. NCBI nr
Match: TYJ99047.1 (hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 5.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP
Sbjct: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

BLAST of MELO3C002147 vs. NCBI nr
Match: KGN64190.1 (hypothetical protein Csa_013611, partial [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 7.3e-27
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

BLAST of MELO3C002147 vs. NCBI nr
Match: KAG6584306.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.6e-19
Identity = 52/70 (74.29%), Postives = 58/70 (82.86%), Query Frame = 0

Query: 8   RERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF----RQISRSPLGI 67
           ++    EKI  PFPVHSQVRKIKEESE I+DWRPGQPEI+PP AAF    RQISRSPLG+
Sbjct: 615 KQNTRMEKIGTPFPVHSQVRKIKEESEMIIDWRPGQPEIKPPPAAFREINRQISRSPLGV 674

Query: 68  SGRPISVGDS 74
           SGRPISVG+S
Sbjct: 675 SGRPISVGES 684

BLAST of MELO3C002147 vs. NCBI nr
Match: KAG7012158.1 (hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-17
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 5  SDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSP 64
          ++   R + EKI   FPVHSQVRKIKEESETI+DW PGQPEIRP  AAFR     ISRSP
Sbjct: 7  NNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSP 66

Query: 65 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 67 LGISGRPISVGDS 79

BLAST of MELO3C002147 vs. NCBI nr
Match: KAG6572977.1 (NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-15
Identity = 49/69 (71.01%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 5  SDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQ----ISRSP 64
          ++   R + EKI   FPVHSQVRKIKEESETI+DW PGQPEIRP  AAFR     ISRSP
Sbjct: 7  NNRENREAMEKIGTLFPVHSQVRKIKEESETIIDWGPGQPEIRPLAAAFRDMNRPISRSP 66

Query: 65 LGISGRPIS 70
          LGISGRPIS
Sbjct: 67 LGISGRPIS 75

BLAST of MELO3C002147 vs. ExPASy TrEMBL
Match: A0A5D3BIV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002510 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.8e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP
Sbjct: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

BLAST of MELO3C002147 vs. ExPASy TrEMBL
Match: A0A0A0LQJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 64/73 (87.67%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1  MEIDSDMRERNSTEKIEVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSP 60
          MEI SD+RE NS EKIE PFPVHSQVRKIKEES+T +DWRPGQPEIRPPTA+FRQISRSP
Sbjct: 1  MEIVSDIRETNSMEKIEAPFPVHSQVRKIKEESDTTIDWRPGQPEIRPPTASFRQISRSP 60

Query: 61 LGISGRPISVGDS 74
          LGISGRPISVGDS
Sbjct: 61 LGISGRPISVGDS 73

BLAST of MELO3C002147 vs. ExPASy TrEMBL
Match: A0A314ZBL8 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_28850 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 20 FPVHSQVRKIKEESETIMDWRPGQPEIRPPTAAF---RQISRSPLGISGRPISVGDS 74
          FPVHSQVRKIK+ESE I+DW PG+PE+RP        RQISRSPLGIS RPISVGDS
Sbjct: 3  FPVHSQVRKIKQESEKIIDWLPGKPEMRPVLGEITMTRQISRSPLGISCRPISVGDS 59

BLAST of MELO3C002147 vs. ExPASy TrEMBL
Match: A0A6A4PFG9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0370691 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 22 VHSQVRKIKEESETIMDWRPGQPEIRPPTAAFRQISRSPLGISGRPISVGDS 74
          +HSQVRKIK+ESE I+DW PGQPEIRP    FR+ISRSPLGISGR ISVG+S
Sbjct: 16 IHSQVRKIKQESEKILDWSPGQPEIRP---VFRRISRSPLGISGRSISVGES 64

BLAST of MELO3C002147 vs. ExPASy TrEMBL
Match: A0A498I238 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.2e-12
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 8  RERNSTEKI-----EVPFPVHSQVRKIKEESETIMDWRPGQPEIRPPT--AAFRQISRSP 67
          R  N++ K+     EV FPVHSQVRKIK+ES+  +DW PG+PE+R P      RQISRSP
Sbjct: 4  RNSNNSRKMEEGFEEVGFPVHSQVRKIKQESDKTIDWLPGKPEMRRPVFKEITRQISRSP 63

Query: 68 LGISGRPISVGDS 74
          LGIS RPISVGDS
Sbjct: 64 LGISCRPISVGDS 76

BLAST of MELO3C002147 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 22 VHSQVRKIKEESETIMDWRPGQPEIRPPTAAF--RQISRSPLGISGRPISVGD 73
          +HSQV KIK+E E I      QPE+R   +    RQ SRSPLG+  R ISVG+
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRRVLSEIKRRQRSRSPLGLGERSISVGN 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYJ99047.15.8e-32100.00hypothetical protein E5676_scaffold248G002510 [Cucumis melo var. makuwa][more]
KGN64190.17.3e-2787.67hypothetical protein Csa_013611, partial [Cucumis sativus][more]
KAG6584306.15.6e-1974.29DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s... [more]
KAG7012158.11.8e-1772.60hypothetical protein SDJN02_24910, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6572977.13.8e-1571.01NF-X1-type zinc finger protein NFXL1, partial [Cucurbita argyrosperma subsp. sor... [more]
Match NameE-valueIdentityDescription
A0A5D3BIV42.8e-32100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LQJ23.6e-2787.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042955 PE=4 SV=1[more]
A0A314ZBL81.5e-1273.68Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_288... [more]
A0A6A4PFG92.5e-1276.92Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr14g0370691 PE=4 SV=1[more]
A0A498I2384.2e-1261.64Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_023484 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G67920.16.4e-0550.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34780OS08G0427800 PROTEINcoord: 1..73
NoneNo IPR availablePANTHERPTHR34780:SF5OS08G0427800 PROTEINcoord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002147.1MELO3C002147.1mRNA