MELO3C000667 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000667
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase domain-containing protein
Location	chr02: 16365578 .. 16365781 (-)
RNA-Seq Expression	MELO3C000667
Synteny	MELO3C000667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGCCACCCGGTGGTGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCT

mRNA sequence

CGAGCCACCCGGTGGTGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCT

Coding sequence (CDS)

AGCCACCCGGTGGTGTGGTACGAAGTGGGTTTAGTACGCCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGC

Protein sequence

SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQG

Homology

[Close]

BLAST of MELO3C000667 vs. NCBI nr
Match: KAA0060781.1 (hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 35  SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 94

Query: 61  NDNGKQG 68
           NDNGKQG
Sbjct: 95  NDNGKQG 101

[Close]

BLAST of MELO3C000667 vs. NCBI nr
Match: KAA0041230.1 (hypothetical protein E6C27_scaffold128G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 5.0e-30
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           SHPVV YEVGLVRPAK GP YSERCV HSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 240 SHPVVRYEVGLVRPAKMGPQYSERCVLHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 299

Query: 61  NDNGKQG 68
           NDNGKQG
Sbjct: 300 NDNGKQG 306

[Close]

BLAST of MELO3C000667 vs. NCBI nr
Match: PLY81935.1 (hypothetical protein LSAT_5X16200 [Lactuca sativa])

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           S PVVWY VGLVRPAKT P  ++RCVPHSR TAS+ILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 50  SRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNG 109

Query: 61  NDNGKQG 68
           N NGKQG
Sbjct: 110 NYNGKQG 116

[Close]

BLAST of MELO3C000667 vs. NCBI nr
Match: GEX76084.1 (DNA polymerase-like [Tanacetum cinerariifolium])

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           S PVVWY VGLVRPAKT P  ++RCVPHSR TAS+ILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 714 SRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNG 773

Query: 61  NDNGKQG 68
           N NGKQG
Sbjct: 774 NYNGKQG 780

[Close]

BLAST of MELO3C000667 vs. NCBI nr
Match: PLY62414.1 (hypothetical protein LSAT_5X16680 [Lactuca sativa])

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           S PVVWY VGLVRPAKT P  ++RCVPHSR TAS+ILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 54  SRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNG 113

Query: 61  NDNGKQG 68
           N NGKQG
Sbjct: 114 NYNGKQG 120

[Close]

BLAST of MELO3C000667 vs. ExPASy TrEMBL
Match: A0A5A7V4U9 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00030 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.5e-35
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 35  SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 94

Query: 61  NDNGKQG 68
           NDNGKQG
Sbjct: 95  NDNGKQG 101

[Close]

BLAST of MELO3C000667 vs. ExPASy TrEMBL
Match: A0A5A7TD62 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G001970 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           SHPVV YEVGLVRPAK GP YSERCV HSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 240 SHPVVRYEVGLVRPAKMGPQYSERCVLHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 299

Query: 61  NDNGKQG 68
           NDNGKQG
Sbjct: 300 NDNGKQG 306

[Close]

BLAST of MELO3C000667 vs. ExPASy TrEMBL
Match: A0A2J6L3N0 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           S PVVWY VGLVRPAKT P  ++RCVPHSR TAS+ILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 50  SRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNG 109

Query: 61  NDNGKQG 68
           N NGKQG
Sbjct: 110 NYNGKQG 116

[Close]

BLAST of MELO3C000667 vs. ExPASy TrEMBL
Match: A0A2J6JHW2 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.3e-27
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   SHPVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNG 60
           S PVVWY VGLVRPAKT P  ++RCVPHSR TAS+ILEEGGDDVKSAWPLWAGPHTCYNG
Sbjct: 54  SRPVVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAGPHTCYNG 113

Query: 61  NDNGKQG 68
           N NGKQG
Sbjct: 114 NYNGKQG 120

[Close]

BLAST of MELO3C000667 vs. ExPASy TrEMBL
Match: A0A4D8Y8D7 (Uncharacterized protein ycf68 OS=Salvia splendens OX=180675 GN=Saspl_047302 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3   PVVWYEVGLVRPAKTGPHYSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGND 62
           PVVWY VGLVRPAKT P   +RCVPHSR T S+ILEEGGDDVKSAWPLWAGPHTCYNGN 
Sbjct: 71  PVVWYVVGLVRPAKTAPKERKRCVPHSRRTTSDILEEGGDDVKSAWPLWAGPHTCYNGNY 130

Query: 63  NGKQG 68
           NGKQG
Sbjct: 131 NGKQG 135

The following BLAST results are available for this feature:

BLAST of MELO3C000667 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060781.1	2.0e-34	100.00	hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa]	[more]
KAA0041230.1	5.0e-30	94.03	hypothetical protein E6C27_scaffold128G001970 [Cucumis melo var. makuwa]	[more]
PLY81935.1	6.7e-27	85.07	hypothetical protein LSAT_5X16200 [Lactuca sativa]	[more]
GEX76084.1	6.7e-27	85.07	DNA polymerase-like [Tanacetum cinerariifolium]	[more]
PLY62414.1	6.7e-27	85.07	hypothetical protein LSAT_5X16680 [Lactuca sativa]	[more]

BLAST of MELO3C000667 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C000667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4U9	9.5e-35	100.00	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TD62	2.4e-30	94.03	Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A2J6L3N0	3.3e-27	85.07	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=...	[more]
A0A2J6JHW2	3.3e-27	85.07	Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=...	[more]
A0A4D8Y8D7	8.0e-26	84.62	Uncharacterized protein ycf68 OS=Salvia splendens OX=180675 GN=Saspl_047302 PE=3...	[more]

BLAST of MELO3C000667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890:SF2	SUBFAMILY NOT NAMED	coord: 16..67
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 16..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000667.1	MELO3C000667.1	mRNA