MELO.jh102002.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh102002.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase
Location	chr07: 9554898 .. 9556256 (-)
RNA-Seq Expression	MELO.jh102002.1
Synteny	MELO.jh102002.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGGAGGTGTCTTAGAGACACCGACGGGAGCTTGCGGCAGCCGGGAGGACTCGAGAGAGCTACCGCTTGCTACTGCGGGAGAGTCCACGGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA

mRNA sequence

ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA

Coding sequence (CDS)

ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA

Protein sequence

MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCFGAAGTLLICVLGNPLRRHRPAFGPERVFATTGGGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPTFSRRTSGLPPPREVDFAIELEPAPDLEGPRMAPPN

Homology

[Close]

BLAST of MELO.jh102002.1 vs. NCBI nr
Match: KAA0053272.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 652 bits (1682), Expect = 6.80e-227
Identity = 366/469 (78.04%), Postives = 377/469 (80.38%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERAD+SKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 254 THADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRQ 313

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DC+GKEVVFNPPSEASFKFR AGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553

[Close]

BLAST of MELO.jh102002.1 vs. NCBI nr
Match: KAA0046571.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 652 bits (1682), Expect = 3.65e-225
Identity = 365/469 (77.83%), Postives = 376/469 (80.17%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPER D+SKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 254 THADALRIALDLSLPERVDSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 313

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVF TT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DC+GKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553

[Close]

BLAST of MELO.jh102002.1 vs. NCBI nr
Match: KAA0031437.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 658 bits (1698), Expect = 2.91e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89  MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508

[Close]

BLAST of MELO.jh102002.1 vs. NCBI nr
Match: TYK06888.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 658 bits (1698), Expect = 2.91e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89  MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508

[Close]

BLAST of MELO.jh102002.1 vs. NCBI nr
Match: KAA0032535.1 (pol protein [Cucumis melo var. makuwa] >KAA0033280.1 pol protein [Cucumis melo var. makuwa] >KAA0035195.1 pol protein [Cucumis melo var. makuwa] >KAA0040656.1 pol protein [Cucumis melo var. makuwa] >KAA0046921.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 658 bits (1698), Expect = 1.17e-220
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 148 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 207

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 208 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 267

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 268 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 327

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 328 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 387

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 388 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 447

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 448 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 507

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 508 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 567

[Close]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match: A0A5A7UC03 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00700 PE=4 SV=1)

HSP 1 Score: 652 bits (1682), Expect = 3.29e-227
Identity = 366/469 (78.04%), Postives = 377/469 (80.38%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERAD+SKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 254 THADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRQ 313

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DC+GKEVVFNPPSEASFKFR AGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553

[Close]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ22 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00990 PE=4 SV=1)

HSP 1 Score: 652 bits (1682), Expect = 1.77e-225
Identity = 365/469 (77.83%), Postives = 376/469 (80.17%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPER D+SKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 254 THADALRIALDLSLPERVDSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 313

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVF TT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DC+GKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553

[Close]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match: A0A5A7SPM4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001940 PE=4 SV=1)

HSP 1 Score: 658 bits (1698), Expect = 1.41e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89  MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508

[Close]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match: A0A5D3C6W3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001930 PE=4 SV=1)

HSP 1 Score: 658 bits (1698), Expect = 1.41e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89  MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508

[Close]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match: A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)

HSP 1 Score: 658 bits (1698), Expect = 5.68e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0


Query: 1   MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
           MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 148 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 207

Query: 61  LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
           LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 208 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 267

Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
           THADALRIALDLSLPERADASKAAGRGS   +KRKVET    A  R+L  G G F     
Sbjct: 268 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 327

Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
              AAG  L                C+ G+ +  R  +P    +                
Sbjct: 328 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 387

Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
               RVFATT     RA  VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 388 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 447

Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
           GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 448 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 507

Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
           DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 508 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 567

The following BLAST results are available for this feature:

BLAST of MELO.jh102002.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053272.1	6.80e-227	78.04	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0046571.1	3.65e-225	77.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0031437.1	2.91e-221	78.89	pol protein [Cucumis melo var. makuwa]	[more]
TYK06888.1	2.91e-221	78.89	pol protein [Cucumis melo var. makuwa]	[more]
KAA0032535.1	1.17e-220	78.89	pol protein [Cucumis melo var. makuwa] >KAA0033280.1 pol protein [Cucumis melo v...	[more]

BLAST of MELO.jh102002.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC03	3.29e-227	78.04	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TZ22	1.77e-225	77.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7SPM4	1.41e-221	78.89	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3C6W3	1.41e-221	78.89	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A5A7UBS1	5.68e-221	78.89	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 11..107 e-value: 4.7E-17 score: 62.0
None	No IPR available	PFAM	PF08284	RVP_2	coord: 210..326 e-value: 4.4E-37 score: 126.9
None	No IPR available	PANTHER	PTHR24559:SF330	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 215..408
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 215..408
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 248..307 e-value: 1.48985E-10 score: 55.4204
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 218..333 e-value: 8.2E-21 score: 76.1
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 216..315
IPR001969	Aspartic peptidase, active site	PROSITE	PS00141	ASP_PROTEASE	coord: 228..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh102002.1.t1	MELO.jh102002.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity