Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGGAGGTGTCTTAGAGACACCGACGGGAGCTTGCGGCAGCCGGGAGGACTCGAGAGAGCTACCGCTTGCTACTGCGGGAGAGTCCACGGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA
mRNA sequence
ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA
Coding sequence (CDS)
ATGAAGTGCCCAGAAGACCAGAAGGTGCAGTGTGCAGTCTTCTTCTTGGAGGACAGGGGCACCGCCTGGTGGGAGACCGCGGAGAGAATGCTAGGGGGCGATGTAAGCAAAATAACATGGGAGCAGTTCAAGGAGAACTTCTATGCTAAGTTTTTCTCCGCCAATGTGAAGCACGCCAAGCTGCAAGAGTTCCTAAACTTGGAGCAAGGCGACATGACGGTGGAGCAGTACGACGCCGAGTTCGATATGTTGTCCCGCTTTGCTCCCGATATGGTAAGGGACGAGGCTGCCAGGACGGAGAAATTTGTTAGAGGACTCAGGCTAGACCTTCAGGGCATTGTCAGAGCCCTCCGCCCAGCCACGCATGCTGATGCACTACGTATAGCACTGGATTTGAGCCTGCCTGAGAGAGCCGATGCGTCTAAGGCTGCCGGCAGAGGGTCGCCTTGGGACGAGAAGAGAAAGGTTGAGACGACGTGCACCGCAGCGAACACGAGGTCGTTGCTTGGCGGGAGTGGATGCTTCGGTGCAGCGGGCACACTGCTGATATGTGTCCTCGGAAACCCTTTGAGGCGACACCGCCCAGCCTTCGGCCCGGAGAGAGTTTTCGCCACTACCGGCGGAGGCCGAGCGGAGCGCGTGGTGACAGGTACGCTCCCAATTTTGGGGCACTATGCTTTTGTGCTATTTGACTCTGGGTCATCCCACTCGTTTGTATCCTCCGTTTTCGTTCAGCATGTGGGTTTAGAGGTAGAGACTTTGGGTAGTGTTTTGTCGGTTTCTACTCCATCTGGGGAGGTCCTGTTATCCAAAGAACAAATAAAGGCATGTCGGGTAGAGATAGCGAATCGTATGTTAGACGTGACCTTGCTAGTGTTAGACATGCAGGATTTTGATGTGATACTAGGCATGGATTGGCTATCAGCCAACCATGCAAATATAGACTGTTATGGCAAGGAAGTTGTCTTCAACCCTCCCTCCGAGGCTAGTTTCAAATTCAGGGGGGCAGGCATGGTATGTATACCCAAGGTCATCTCAGCCATGAAGGCTAGTAAACTACTCAGCCAGGGTACTTGGGGTATTTTGGCAAGCGTAGTGGATGTGAGAGAGCCGGAAGTTTCCCTATCTTCCGAACCAGTGGTAAGAGAGTACCCGACGTTTTCCAGACGAACTTCCGGACTTCCGCCTCCCAGAGAAGTAGACTTCGCTATCGAGTTAGAGCCGGCGCCCGATCTCGAGGGCCCCAGAATGGCTCCACCGAACTAA
Protein sequence
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAKLQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPATHADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCFGAAGTLLICVLGNPLRRHRPAFGPERVFATTGGGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETLGSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANIDCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVSLSSEPVVREYPTFSRRTSGLPPPREVDFAIELEPAPDLEGPRMAPPN
Homology
BLAST of MELO.jh102002.1 vs. NCBI nr
Match:
KAA0053272.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 652 bits (1682), Expect = 6.80e-227
Identity = 366/469 (78.04%), Postives = 377/469 (80.38%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERAD+SKAAGRGS +KRKVET A R+L G G F
Sbjct: 254 THADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRQ 313
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DC+GKEVVFNPPSEASFKFR AGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553
BLAST of MELO.jh102002.1 vs. NCBI nr
Match:
KAA0046571.1 (reverse transcriptase [Cucumis melo var. makuwa])
HSP 1 Score: 652 bits (1682), Expect = 3.65e-225
Identity = 365/469 (77.83%), Postives = 376/469 (80.17%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPER D+SKAAGRGS +KRKVET A R+L G G F
Sbjct: 254 THADALRIALDLSLPERVDSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 313
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVF TT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DC+GKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553
BLAST of MELO.jh102002.1 vs. NCBI nr
Match:
KAA0031437.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 658 bits (1698), Expect = 2.91e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508
BLAST of MELO.jh102002.1 vs. NCBI nr
Match:
TYK06888.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 658 bits (1698), Expect = 2.91e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508
BLAST of MELO.jh102002.1 vs. NCBI nr
Match:
KAA0032535.1 (pol protein [Cucumis melo var. makuwa] >KAA0033280.1 pol protein [Cucumis melo var. makuwa] >KAA0035195.1 pol protein [Cucumis melo var. makuwa] >KAA0040656.1 pol protein [Cucumis melo var. makuwa] >KAA0046921.1 pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 658 bits (1698), Expect = 1.17e-220
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 148 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 207
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 208 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 267
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 268 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 327
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 328 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 387
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 388 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 447
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 448 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 507
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 508 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 567
BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match:
A0A5A7UC03 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00700 PE=4 SV=1)
HSP 1 Score: 652 bits (1682), Expect = 3.29e-227
Identity = 366/469 (78.04%), Postives = 377/469 (80.38%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERAD+SKAAGRGS +KRKVET A R+L G G F
Sbjct: 254 THADALRIALDLSLPERADSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRQ 313
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DC+GKEVVFNPPSEASFKFR AGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRWAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553
BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match:
A0A5A7TZ22 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00990 PE=4 SV=1)
HSP 1 Score: 652 bits (1682), Expect = 1.77e-225
Identity = 365/469 (77.83%), Postives = 376/469 (80.17%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 134 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 193
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 194 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 253
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPER D+SKAAGRGS +KRKVET A R+L G G F
Sbjct: 254 THADALRIALDLSLPERVDSSKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 313
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 314 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADVCPRKPFETTPPQPSA 373
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVF TT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 374 AQQGRVFTTTQQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 433
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 434 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 493
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DC+GKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVD+REPEVS
Sbjct: 494 DCFGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDIREPEVS 553
BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match:
A0A5A7SPM4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001940 PE=4 SV=1)
HSP 1 Score: 658 bits (1698), Expect = 1.41e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508
BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match:
A0A5D3C6W3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001930 PE=4 SV=1)
HSP 1 Score: 658 bits (1698), Expect = 1.41e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 89 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 148
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 149 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 208
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 209 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 268
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 269 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 328
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 329 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 388
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 389 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 448
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 449 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 508
BLAST of MELO.jh102002.1 vs. ExPASy TrEMBL
Match:
A0A5A7UBS1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00110 PE=4 SV=1)
HSP 1 Score: 658 bits (1698), Expect = 5.68e-221
Identity = 370/469 (78.89%), Postives = 378/469 (80.60%), Query Frame = 0
Query: 1 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 60
MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK
Sbjct: 148 MKCPEDQKVQCAVFFLEDRGTAWWETAERMLGGDVSKITWEQFKENFYAKFFSANVKHAK 207
Query: 61 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 120
LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA
Sbjct: 208 LQEFLNLEQGDMTVEQYDAEFDMLSRFAPDMVRDEAARTEKFVRGLRLDLQGIVRALRPA 267
Query: 121 THADALRIALDLSLPERADASKAAGRGSPWDEKRKVETTCTAANTRSLLGGSGCF----- 180
THADALRIALDLSLPERADASKAAGRGS +KRKVET A R+L G G F
Sbjct: 268 THADALRIALDLSLPERADASKAAGRGSALGQKRKVETQPDVAPQRTLRSG-GVFQRHRR 327
Query: 181 --GAAGTLLI---------------CVLGNPL--RRHRPAFGPE---------------- 240
AAG L C+ G+ + R +P +
Sbjct: 328 ELAAAGRTLRELPACTTCGRVHGGRCLAGSGVCFRCRQPGHTADMCPRKPFETTPPQPSA 387
Query: 241 ----RVFATTG--GGRAERVVTGTLPILGHYAFVLFDSGSSHSFVSSVFVQHVGLEVETL 300
RVFATT RA VVTGTLPILGHYAFVLFDSGSSHSF+SSVFVQHVGLEVE L
Sbjct: 388 AQQGRVFATTRQEAERAGTVVTGTLPILGHYAFVLFDSGSSHSFISSVFVQHVGLEVEPL 447
Query: 301 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 360
GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI
Sbjct: 448 GSVLSVSTPSGEVLLSKEQIKACRVEIANRMLDVTLLVLDMQDFDVILGMDWLSANHANI 507
Query: 361 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 419
DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS
Sbjct: 508 DCYGKEVVFNPPSEASFKFRGAGMVCIPKVISAMKASKLLSQGTWGILASVVDVREPEVS 567
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0053272.1 | 6.80e-227 | 78.04 | gag protease polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0046571.1 | 3.65e-225 | 77.83 | reverse transcriptase [Cucumis melo var. makuwa] | [more] |
KAA0031437.1 | 2.91e-221 | 78.89 | pol protein [Cucumis melo var. makuwa] | [more] |
TYK06888.1 | 2.91e-221 | 78.89 | pol protein [Cucumis melo var. makuwa] | [more] |
KAA0032535.1 | 1.17e-220 | 78.89 | pol protein [Cucumis melo var. makuwa] >KAA0033280.1 pol protein [Cucumis melo v... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UC03 | 3.29e-227 | 78.04 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5A7TZ22 | 1.77e-225 | 77.83 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11... | [more] |
A0A5A7SPM4 | 1.41e-221 | 78.89 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... | [more] |
A0A5D3C6W3 | 1.41e-221 | 78.89 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13... | [more] |
A0A5A7UBS1 | 5.68e-221 | 78.89 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13... | [more] |
Match Name | E-value | Identity | Description | |