MELO.jh034630.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034630.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationscaffold_mitochondria: 959252 .. 959556 (+)
RNA-Seq ExpressionMELO.jh034630.1
SyntenyMELO.jh034630.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTTCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATTGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTG

mRNA sequence

GCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTTCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATTGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTG

Coding sequence (CDS)

ATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGA

Protein sequence

MSTHHILGLKKVPRVRLFADESGT
Homology
BLAST of MELO.jh034630.1 vs. NCBI nr
Match: AFK38439.1 (unknown [Lotus japonicus])

HSP 1 Score: 51.6 bits (122), Expect = 7.34e-08
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESGT 24
          MSTHHILGLKKVPRVRLFAD SGT
Sbjct: 1  MSTHHILGLKKVPRVRLFADSSGT 24

BLAST of MELO.jh034630.1 vs. NCBI nr
Match: QVJ97861.1 (hypothetical protein [Apium graveolens] >QVJ97927.1 hypothetical protein [Apium graveolens] >QVJ98023.1 hypothetical protein [Apium graveolens] >QVJ98092.1 hypothetical protein [Apium graveolens])

HSP 1 Score: 51.6 bits (122), Expect = 1.62e-06
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1   MSTHHILGLKKVPRVRLFADESGT 24
           MSTHHILGLKKVPRVRLFAD SGT
Sbjct: 176 MSTHHILGLKKVPRVRLFADSSGT 199

BLAST of MELO.jh034630.1 vs. NCBI nr
Match: QVJ97844.1 (hypothetical protein [Apium graveolens] >QVJ97885.1 hypothetical protein [Apium graveolens] >QVJ97983.1 hypothetical protein [Apium graveolens])

HSP 1 Score: 51.6 bits (122), Expect = 1.62e-06
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1   MSTHHILGLKKVPRVRLFADESGT 24
           MSTHHILGLKKVPRVRLFAD SGT
Sbjct: 176 MSTHHILGLKKVPRVRLFADSSGT 199

BLAST of MELO.jh034630.1 vs. NCBI nr
Match: KAA0042453.1 (hypothetical protein E6C27_scaffold45606G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 8.72e-06
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADES 22
          MSTHHILGLKKVPRVRLFADES
Sbjct: 1  MSTHHILGLKKVPRVRLFADES 22

BLAST of MELO.jh034630.1 vs. NCBI nr
Match: TKS02678.1 (hypothetical protein D5086_0000160790 [Populus alba])

HSP 1 Score: 49.3 bits (116), Expect = 1.38e-05
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESG 23
          MSTHHILGLKKVPRVRLFAD SG
Sbjct: 1  MSTHHILGLKKVPRVRLFADSSG 23

BLAST of MELO.jh034630.1 vs. ExPASy TrEMBL
Match: M0UC48 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.76e-08
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESGT 24
          MSTHHILGLKKVPRVRLFAD+SGT
Sbjct: 1  MSTHHILGLKKVPRVRLFADQSGT 24

BLAST of MELO.jh034630.1 vs. ExPASy TrEMBL
Match: I3SDU7 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.55e-08
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESGT 24
          MSTHHILGLKKVPRVRLFAD SGT
Sbjct: 1  MSTHHILGLKKVPRVRLFADSSGT 24

BLAST of MELO.jh034630.1 vs. ExPASy TrEMBL
Match: A0A5A7TGU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45606G00010 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.22e-06
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADES 22
          MSTHHILGLKKVPRVRLFADES
Sbjct: 1  MSTHHILGLKKVPRVRLFADES 22

BLAST of MELO.jh034630.1 vs. ExPASy TrEMBL
Match: A0A4U5PYH8 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160790 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.67e-06
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESG 23
          MSTHHILGLKKVPRVRLFAD SG
Sbjct: 1  MSTHHILGLKKVPRVRLFADSSG 23

BLAST of MELO.jh034630.1 vs. ExPASy TrEMBL
Match: A0A5D3DWV5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002410 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.73e-06
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 0

Query: 1  MSTHHILGLKKVPRVRLFADESG 23
          MSTHHILGLKKVPRV+LF DESG
Sbjct: 8  MSTHHILGLKKVPRVQLFTDESG 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AFK38439.17.34e-0895.83unknown [Lotus japonicus][more]
QVJ97861.11.62e-0695.83hypothetical protein [Apium graveolens] >QVJ97927.1 hypothetical protein [Apium ... [more]
QVJ97844.11.62e-0695.83hypothetical protein [Apium graveolens] >QVJ97885.1 hypothetical protein [Apium ... [more]
KAA0042453.18.72e-06100.00hypothetical protein E6C27_scaffold45606G00010 [Cucumis melo var. makuwa][more]
TKS02678.11.38e-0595.65hypothetical protein D5086_0000160790 [Populus alba][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M0UC481.76e-0895.83Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1[more]
I3SDU73.55e-0895.83Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
A0A5A7TGU14.22e-06100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A4U5PYH86.67e-0695.65Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000160790 PE=4 SV=1[more]
A0A5D3DWV57.73e-0691.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh034630.1.t1MELO.jh034630.1.t1mRNA