MELO.jh034236.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh034236.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	scaffold_mitochondria: 1600385 .. 1601083 (-)
RNA-Seq Expression	MELO.jh034236.1
Synteny	MELO.jh034236.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGGATTGGATGATGGAAAAACCAGCAAGCCGCTTGACCTTTCATACGAGGTCAAGGGTCAAAGAATTTGAGTTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTCAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCTTTCAATCAGTCGAAGGAGCGGCAAGCCTTGACTTGAGATTCTCTTAGTCAAGCTATCTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACTGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTCTCGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGG

mRNA sequence

GTTGTGGATTGGATGATGGAAAAACCAGCAAGCCGCTTGACCTTTCATACGAGGTCAAGGGTCAAAGAATTTGAGTTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTCAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCTTTCAATCAGTCGAAGGAGCGGCAAGCCTTGACTTGAGATTCTCTTAGTCAAGCTATCTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACTGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTCTCGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGG

Coding sequence (CDS)

ATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAG

Protein sequence

MSRLKRALTGLGGPNPRMWQNTGMTCG

Homology

[Close]

BLAST of MELO.jh034236.1 vs. NCBI nr
Match: THG00718.1 (hypothetical protein TEA_019873 [Camellia sinensis var. sinensis])

HSP 1 Score: 44.3 bits (103), Expect = 6.78e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1  MSRLKRALTGLGGPNPRMWQNTGM 24
          MSRLKRALTGLGGPNP M +NTGM
Sbjct: 1  MSRLKRALTGLGGPNPCMRKNTGM 24

[Close]

BLAST of MELO.jh034236.1 vs. ExPASy TrEMBL
Match: A0A4S4DDJ5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_019873 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 3.28e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1  MSRLKRALTGLGGPNPRMWQNTGM 24
          MSRLKRALTGLGGPNP M +NTGM
Sbjct: 1  MSRLKRALTGLGGPNPCMRKNTGM 24

[Close]

BLAST of MELO.jh034236.1 vs. ExPASy TrEMBL
Match: A0A4S4DEP8 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_019879 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.74e-04
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0


Query: 1   MSRLKRALTGLGGPNPRMWQNTGM 24
           MSRLKRALTGLGGPNP M +NTGM
Sbjct: 185 MSRLKRALTGLGGPNPCMRKNTGM 208

The following BLAST results are available for this feature:

BLAST of MELO.jh034236.1 vs. NCBI nr


Match Name	E-value	Identity	Description
THG00718.1	6.78e-04	87.50	hypothetical protein TEA_019873 [Camellia sinensis var. sinensis]	[more]

BLAST of MELO.jh034236.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh034236.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S4DDJ5	3.28e-04	87.50	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0198...	[more]
A0A4S4DEP8	5.74e-04	87.50	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0198...	[more]

BLAST of MELO.jh034236.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh034236.1.t1	MELO.jh034236.1.t1	mRNA