MELO.jh033815.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033815.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr09: 21950266 .. 21950391 (+)
RNA-Seq ExpressionMELO.jh033815.1
SyntenyMELO.jh033815.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAATTCCCACCTTTAAAAGAAAAAAACTGTAGAAATGTTAAAAACAAATATACCAGACAA

mRNA sequence

CCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAATTCCCACCTTTAAAAGAAAAAAACTGTAGAAATGTTAAAAACAAATATACCAGACAA

Coding sequence (CDS)

ATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAATTCCCACCTTTAA

Protein sequence

MVARLTPDQKVACSIHVGFNSHL
Homology
BLAST of MELO.jh033815.1 vs. NCBI nr
Match: AES96909.1 (hypothetical protein MTR_5g043010 [Medicago truncatula])

HSP 1 Score: 47.0 bits (110), Expect = 9.81e-06
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFNS 21
          MVARLTPDQKVACSIHVGFNS
Sbjct: 7  MVARLTPDQKVACSIHVGFNS 27

BLAST of MELO.jh033815.1 vs. NCBI nr
Match: KAF7810044.1 (pentatricopeptide repeat-containing protein [Senna tora])

HSP 1 Score: 45.4 bits (106), Expect = 1.93e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFN 20
          MVARLTPDQKVACSIHVGFN
Sbjct: 1  MVARLTPDQKVACSIHVGFN 20

BLAST of MELO.jh033815.1 vs. NCBI nr
Match: CAA2633262.1 (unnamed protein product [Spirodela intermedia] >CAA7409564.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 45.8 bits (107), Expect = 1.94e-05
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFNS 21
          MVARLTPDQKVACSIHVGFN+
Sbjct: 1  MVARLTPDQKVACSIHVGFNA 21

BLAST of MELO.jh033815.1 vs. NCBI nr
Match: CAA7399515.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 45.4 bits (106), Expect = 2.20e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFN 20
          MVARLTPDQKVACSIHVGFN
Sbjct: 1  MVARLTPDQKVACSIHVGFN 20

BLAST of MELO.jh033815.1 vs. NCBI nr
Match: KAF7828761.1 (pentatricopeptide repeat-containing protein [Senna tora])

HSP 1 Score: 45.4 bits (106), Expect = 2.50e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFN 20
          MVARLTPDQKVACSIHVGFN
Sbjct: 1  MVARLTPDQKVACSIHVGFN 20

BLAST of MELO.jh033815.1 vs. ExPASy TrEMBL
Match: G7JWN7 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g043010 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.75e-06
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFNS 21
          MVARLTPDQKVACSIHVGFNS
Sbjct: 7  MVARLTPDQKVACSIHVGFNS 27

BLAST of MELO.jh033815.1 vs. ExPASy TrEMBL
Match: A0A7I8JRI3 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_16018792 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.40e-06
Identity = 20/21 (95.24%), Postives = 21/21 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFNS 21
          MVARLTPDQKVACSIHVGFN+
Sbjct: 1  MVARLTPDQKVACSIHVGFNA 21

BLAST of MELO.jh033815.1 vs. ExPASy TrEMBL
Match: A0A7I8KRD2 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010185 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.07e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFN 20
          MVARLTPDQKVACSIHVGFN
Sbjct: 1  MVARLTPDQKVACSIHVGFN 20

BLAST of MELO.jh033815.1 vs. ExPASy TrEMBL
Match: A0A7I8IYX8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07009463 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.42e-05
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFN 20
          MVARLTPDQKVACSIHVGFN
Sbjct: 1  MVARLTPDQKVACSIHVGFN 20

BLAST of MELO.jh033815.1 vs. ExPASy TrEMBL
Match: A0A7I8ICE4 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001966 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.45e-05
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 1  MVARLTPDQKVACSIHVGFNSHL 23
          MVARLTPDQKVACSIHVGF S +
Sbjct: 1  MVARLTPDQKVACSIHVGFKSQI 23

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AES96909.19.81e-06100.00hypothetical protein MTR_5g043010 [Medicago truncatula][more]
KAF7810044.11.93e-05100.00pentatricopeptide repeat-containing protein [Senna tora][more]
CAA2633262.11.94e-0595.24unnamed protein product [Spirodela intermedia] >CAA7409564.1 unnamed protein pro... [more]
CAA7399515.12.20e-05100.00unnamed protein product [Spirodela intermedia][more]
KAF7828761.12.50e-05100.00pentatricopeptide repeat-containing protein [Senna tora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
G7JWN74.75e-06100.00Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_5g043010 PE=4 SV=1[more]
A0A7I8JRI39.40e-0695.24Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_16018792 PE=4 SV... [more]
A0A7I8KRD21.07e-05100.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_07010185 PE=4 SV... [more]
A0A7I8IYX81.42e-05100.00Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_07009463 PE=4 SV... [more]
A0A7I8ICE41.45e-0586.96Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001966 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033815.1.t1MELO.jh033815.1.t1mRNA