MELO.jh016051.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh016051.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGirdin-like
Locationchr07: 21627262 .. 21628508 (+)
RNA-Seq ExpressionMELO.jh016051.1
SyntenyMELO.jh016051.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACATATCTAAGGAAGGAGGCTTGGTTGTCTTTTTTTGCAAAACTGACTTCTGAAAATGTCATATAGAAGGCTCAATGGATGACTTTGAAGGCGGTGATATATAGATGCGGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTTTGTCAGGTGTAGCTCAAACAATTTATACCACCAACTCATAATCTGTAAGAGTTTGACTTTTCATACGATCTTGAAGATTGTCAAGGGAAAAAATGTCAAACAGTATGCGCATGGAAATTTGTAAGGAAGATAAAAGACAAAGGACATTATGAAGGGGTTACTAGTGGGTACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAGGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAACTCGACTGTTAAAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAATATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGTAAATGAATAAAGCAAATAGGAGTTTGAAAAATGAGAAGACAACACTACAAGCAACAGTGGAGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGAAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTAGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGCCGAGCCTCTAAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATAATGTAAGAATATGAGTCATTAAAGACAGATTACGCGCAAATGAAGGTTAATTATGATCTGCTAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTTTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCGTAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGAGACTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

mRNA sequence

ATCCAACATATCTAAGGAAGGAGGCTTGGTTGTCTTTTTTTGCAAAACTGACTTCTGAAAATGTCATATAGAAGGCTCAATGGATGACTTTGAAGGCGGTGATATATAGATGCGGAGATTTTCACAGTGTGCCTTTGTTGGGACCATGGGGAGGTGTTAACTATACACCATTGTTAGTTTTTTGTCAGGTGTAGCTCAAACAATTTATACCACCAACTCATAATCTGTAAGAGTTTGACTTTTCATACGATCTTGAAGATTGTCAAGGGAAAAAATGTCAAACAGTATGCGCATGGAAATTTGTAAGGAAGATAAAAGACAAAGGACATTATGAAGGGGTTACTAGTGGGTACGAGGCATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAGGAGACAAGCTTCGAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAACTCGACTGTTAAAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCAAAAAGACTAAGAGTTTCTTAAAAAATCAATATAAGTTAGAAAAGAATCTTGAGACGTTAGATAAGGAGATGAGGTAAATGAATAAAGCAAATAGGAGTTTGAAAAATGAGAAGACAACACTACAAGCAACAGTGGAGTCGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGAAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTAGAAAATGAGAAACACAAATAATGGATTTGGAAGCACACAATCATTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGCCGAGCCTCTAAAGAGTATGAGATACTGAAAAATTATGTCGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATAATGTAAGAATATGAGTCATTAAAGACAGATTACGCGCAAATGAAGGTTAATTATGATCTGCTAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTTTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCGTAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGAGACTTGGTCGTTTTCATTAATTGTTCATTTTGCTATTGA

Coding sequence (CDS)

ATGAAGGTTAATTATGATCTGCTAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTTTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGTAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCGTAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGAGACTTGGTCGTTTTCATTAA

Protein sequence

MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRFLKMICRELRLGRFH
Homology
[Close]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match: KAA0037619.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.40e-38
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MK++YDL TRDFQVLVERVDQTIEF RMVSKRANGF EWAADLRVN F MQPHADDLNRF
Sbjct: 66  MKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 126 LKMICRELGHFGRFH 140

[Close]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 2.33e-38
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YD+ TRDFQVLVERVDQTIEF RMVSKRANGFVEW ADLRVNFF MQPHADDLNRF
Sbjct: 157 MKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHADDLNRF 216

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 217 LKMICRELGHFGRFH 231

[Close]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (332), Expect = 1.14e-37
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF EW A+LRVNFF MQPHADDLNRF
Sbjct: 66  MKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   G FH
Sbjct: 126 LKMICRELGHFGHFH 140

[Close]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (343), Expect = 3.22e-37
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF EWAADLRVNFF +QPHADDLNRF
Sbjct: 251 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 310

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 311 LKMICRELGHFGRFH 325

[Close]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (326), Expect = 9.36e-37
Identity = 65/75 (86.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF E AADLRVNFF MQPHADDLNRF
Sbjct: 66  MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL    RFH
Sbjct: 126 LKMICRELGHFRRFH 140

[Close]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match: A0A5A7T8J1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.76e-39
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MK++YDL TRDFQVLVERVDQTIEF RMVSKRANGF EWAADLRVN F MQPHADDLNRF
Sbjct: 66  MKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 126 LKMICRELGHFGRFH 140

[Close]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.13e-38
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YD+ TRDFQVLVERVDQTIEF RMVSKRANGFVEW ADLRVNFF MQPHADDLNRF
Sbjct: 157 MKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHADDLNRF 216

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 217 LKMICRELGHFGRFH 231

[Close]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match: A0A5A7T4A6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 5.54e-38
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF EW A+LRVNFF MQPHADDLNRF
Sbjct: 66  MKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGFAEWVANLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   G FH
Sbjct: 126 LKMICRELGHFGHFH 140

[Close]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 1.56e-37
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF EWAADLRVNFF +QPHADDLNRF
Sbjct: 251 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 310

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL   GRFH
Sbjct: 311 LKMICRELGHFGRFH 325

[Close]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 4.53e-37
Identity = 65/75 (86.67%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 1   MKVNYDLLTRDFQVLVERVDQTIEFFRMVSKRANGFVEWAADLRVNFFVMQPHADDLNRF 60
           MKV+YDL TRDFQVLVERVDQTIEF RMVSKRANGF E AADLRVNFF MQPHADDLNRF
Sbjct: 66  MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICREL-RLGRFH 74
           LKMICREL    RFH
Sbjct: 126 LKMICRELGHFRRFH 140

The following BLAST results are available for this feature:
BLAST of MELO.jh016051.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0037619.11.40e-3886.67girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.12.33e-3888.00girdin-like [Cucumis melo var. makuwa][more]
KAA0036956.11.14e-3785.33girdin-like [Cucumis melo var. makuwa][more]
TYK23632.13.22e-3788.00girdin-like [Cucumis melo var. makuwa][more]
TYK04062.19.36e-3786.67girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO.jh016051.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T8J16.76e-3986.67Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 P... [more]
A0A5A7UX371.13e-3888.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
A0A5A7T4A65.54e-3885.33Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=... [more]
A0A5D3DJ951.56e-3788.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5D3BYW34.53e-3786.67Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P... [more]
BLAST of MELO.jh016051.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh016051.1.t1MELO.jh016051.1.t1mRNA