MELO.jh015526.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015526.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein FAR1-RELATED SEQUENCE 4-like
Locationchr07: 10698670 .. 10699132 (-)
RNA-Seq ExpressionMELO.jh015526.1
SyntenyMELO.jh015526.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCATACAAATCTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGCAAAAGAACTATAGTAAAGATATTACACGATGACACAGTTGAATCGTACGTATGCATTGGTTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAAGTATGATCAGTTTTTTATGTCAAATTTTTATTGATTTGCAGACAGATGTGGATAGACTAATATCACAATCTATCTAGATAGATGTGGATATTCTTTCTATTCTTTTTTGTTTCTGCTGATAGAAATGTGTTTTTAATTATTATAGGTACATGTACTGCTTTAGAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAAGGGTGGAAATATTATAGACTTATTATTTCTGTTGATAGGACATTTTTGAAG

mRNA sequence

ATGCCTACTGATCGTTCCATTCCTAAAGAGATTGTGCATAAGGCTCATACAAATCTTGGAGTTAATATAAGTTACCAGAAAGCTTGGAGGGCAAAAGAACTATAGTAAAGATATTACACGATGACACAGTTGAATCGTACGTATGCATTGGTTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAAAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAAGGGTGGAAATATTATAGACTTATTATTTCTGTTGATAGGACATTTTTGAAG

Coding sequence (CDS)

ATGACACAGTTGAATCGTACGTATGCATTGGTTCCAAGATTCTTTGATAAATTGGTTGAATCTAACCCAAAAATGGATGATAGTGGTCATTTCAAGTTTTGTTTTATGGCTTTTGGTGCATCAATTGAAGGGTGGAAATATTATAGACTTATTATTTCTGTTGATAGGACATTTTTGAAG

Protein sequence

MTQLNRTYALVPRFFDKLVESNPKMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK
Homology
BLAST of MELO.jh015526.1 vs. NCBI nr
Match: TYK01612.1 (uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.78e-23
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +Y L+PRFFDKLVESNP      +MDD+GHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 51  SYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCRPIISVDETFLK 110

BLAST of MELO.jh015526.1 vs. NCBI nr
Match: KAA0035384.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK03496.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.91e-23
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +YAL+PRFFDKLVESNP      +MDDSGHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 64  SYALIPRFFDKLVESNPSTCTALEMDDSGHFKFCFMAFGASIEGWKYCRTIISVDGTFLK 123

BLAST of MELO.jh015526.1 vs. NCBI nr
Match: KAA0065300.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.49e-22
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7  TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
          +YAL+PRFFDKLVESNP      +MDDSGHFKF FMAFGASIEGWKY R +ISVD TFLK
Sbjct: 12 SYALIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVDGTFLK 71

BLAST of MELO.jh015526.1 vs. NCBI nr
Match: KAA0041797.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.35e-22
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +YAL+PRFFDKLVESNP      ++DD GHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 84  SYALIPRFFDKLVESNPGTCTALEIDDCGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

BLAST of MELO.jh015526.1 vs. NCBI nr
Match: KAA0047748.1 (uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK02382.1 uncharacterized protein E5676_scaffold155G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 6.42e-22
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 8   YALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           YAL+PRFFDKLVESNP      +MDD+GHFKFCFM FGASIEGWKY R IISVDRTFLK
Sbjct: 181 YALIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCRPIISVDRTFLK 239

BLAST of MELO.jh015526.1 vs. ExPASy TrEMBL
Match: A0A5D3BS45 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002110 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.80e-23
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +Y L+PRFFDKLVESNP      +MDD+GHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 51  SYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCRPIISVDETFLK 110

BLAST of MELO.jh015526.1 vs. ExPASy TrEMBL
Match: A0A5D3BZ76 (Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001160 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.83e-23
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +YAL+PRFFDKLVESNP      +MDDSGHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 64  SYALIPRFFDKLVESNPSTCTALEMDDSGHFKFCFMAFGASIEGWKYCRTIISVDGTFLK 123

BLAST of MELO.jh015526.1 vs. ExPASy TrEMBL
Match: A0A5A7VDN9 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1425G00040 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.21e-23
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7  TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
          +YAL+PRFFDKLVESNP      +MDDSGHFKF FMAFGASIEGWKY R +ISVD TFLK
Sbjct: 12 SYALIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVDGTFLK 71

BLAST of MELO.jh015526.1 vs. ExPASy TrEMBL
Match: A0A5A7TJB7 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00980 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.62e-22
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7   TYALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           +YAL+PRFFDKLVESNP      ++DD GHFKFCFMAFGASIEGWKY R IISVD TFLK
Sbjct: 84  SYALIPRFFDKLVESNPGTCTALEIDDCGHFKFCFMAFGASIEGWKYCRPIISVDGTFLK 143

BLAST of MELO.jh015526.1 vs. ExPASy TrEMBL
Match: A0A5D3BUA2 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00850 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.11e-22
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 8   YALVPRFFDKLVESNP------KMDDSGHFKFCFMAFGASIEGWKYYRLIISVDRTFLK 60
           YAL+PRFFDKLVESNP      +MDD+GHFKFCFM FGASIEGWKY R IISVDRTFLK
Sbjct: 181 YALIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMDFGASIEGWKYCRPIISVDRTFLK 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK01612.15.78e-2376.67uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa][more]
KAA0035384.17.91e-2380.00protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK03496.1 ... [more]
KAA0065300.11.49e-2276.67protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 prot... [more]
KAA0041797.13.35e-2276.67protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK27086.1 prot... [more]
KAA0047748.16.42e-2279.66uncharacterized protein E6C27_scaffold1059G00070 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BS452.80e-2376.67MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5D3BZ763.83e-2380.00Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VDN97.21e-2376.67Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7TJB71.62e-2276.67Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BUA23.11e-2279.66MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015526.1.t1MELO.jh015526.1.t1mRNA