MC10g_new0173 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0173
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationMC10: 8726191 .. 8726637 (-)
RNA-Seq ExpressionMC10g_new0173
SyntenyMC10g_new0173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACAATTGCATTACCATGTCCACAACTAGTGAAATTATTTGTGAATGTTAGAAATATGATGAATGTCCCATTGGACCTCAAGGTACCTAGCCAATGTCTTGACCATAGTCAATACCTTGACCCCGAATCTGAGTTAGTTGTGCCTCCATTGACTAATTTAGATGAAGATATGGATTTAATTGCTGATAATATGTTTATAGAACTCAGGACATCAACACATGATGAGTTTGATGAATTAGACCTTGAAGGTGAACATGATATCCCTTCTCAAACATTTAATGACATGGTTAATAGTACTGTAGAACACGATTCTATTTTTCAACCAGTAGCTGTTGAAAGTGATATGTTGTACAAGGGGTTCATGTGTAGTGATAAAGAAACTATGCAACATATCGTCAAACGTTTTGTTGTGAAGAGTCACCGCCCTTACGAAGTTGTATAG

mRNA sequence

ATGTTCACAATTGCATTACCATGTCCACAACTAGTGAAATTATTTGTGAATGTTAGAAATATGATGAATGTCCCATTGGACCTCAAGGTACCTAGCCAATGTCTTGACCATAGTCAATACCTTGACCCCGAATCTGAGTTAGTTGTGCCTCCATTGACTAATTTAGATGAAGATATGGATTTAATTGCTGATAATATGTTTATAGAACTCAGGACATCAACACATGATGAGTTTGATGAATTAGACCTTGAAGGTGAACATGATATCCCTTCTCAAACATTTAATGACATGGTTAATAGTACTGTAGAACACGATTCTATTTTTCAACCAGTAGCTGTTGAAAGTGATATGTTGTACAAGGGGTTCATGTGTAGTGATAAAGAAACTATGCAACATATCGTCAAACGTTTTGTTGTGAAGAGTCACCGCCCTTACGAAGTTGTATAG

Coding sequence (CDS)

ATGTTCACAATTGCATTACCATGTCCACAACTAGTGAAATTATTTGTGAATGTTAGAAATATGATGAATGTCCCATTGGACCTCAAGGTACCTAGCCAATGTCTTGACCATAGTCAATACCTTGACCCCGAATCTGAGTTAGTTGTGCCTCCATTGACTAATTTAGATGAAGATATGGATTTAATTGCTGATAATATGTTTATAGAACTCAGGACATCAACACATGATGAGTTTGATGAATTAGACCTTGAAGGTGAACATGATATCCCTTCTCAAACATTTAATGACATGGTTAATAGTACTGTAGAACACGATTCTATTTTTCAACCAGTAGCTGTTGAAAGTGATATGTTGTACAAGGGGTTCATGTGTAGTGATAAAGAAACTATGCAACATATCGTCAAACGTTTTGTTGTGAAGAGTCACCGCCCTTACGAAGTTGTATAG

Protein sequence

MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMDLIADNMFIELRTSTHDEFDELDLEGEHDIPSQTFNDMVNSTVEHDSIFQPVAVESDMLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV
Homology
BLAST of MC10g_new0173 vs. NCBI nr
Match: XP_022156564.1 (uncharacterized protein LOC111023439 [Momordica charantia])

HSP 1 Score: 234 bits (598), Expect = 1.77e-73
Identity = 115/148 (77.70%), Postives = 130/148 (87.84%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALPCPQL +LFVNVRNMMNV L+L+VPS+CLDHSQ L PE ELVVPP+TNLDEDMD
Sbjct: 37  MFSIALPCPQLAELFVNVRNMMNVSLNLEVPSKCLDHSQCLVPELELVVPPMTNLDEDMD 96

Query: 61  LIADNMFIELRTSTHDEFDELDLEGEHDIPSQTFNDMVNSTVEHDSIFQPVAVESDMLYK 120
           L ADN FI+L+T+  DEFDELDLEGEHDI SQTFNDMVN+  EHDSIFQPVA +++MLYK
Sbjct: 97  LTADNRFIDLKTTIDDEFDELDLEGEHDIYSQTFNDMVNNIAEHDSIFQPVAAKNEMLYK 156

Query: 121 GFMCSDKETMQHIVKRFVVKSHRPYEVV 148
           GF CSDKETMQHIVK FVV +H  YEV+
Sbjct: 157 GFRCSDKETMQHIVKHFVVNNHHTYEVI 184

BLAST of MC10g_new0173 vs. NCBI nr
Match: XP_022143566.1 (uncharacterized protein LOC111013435 [Momordica charantia])

HSP 1 Score: 216 bits (551), Expect = 1.76e-66
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF IAL CPQLV+L VNVRNM+NV LD + PSQCL+HSQ LD E ELVVPP+T+LDEDMD
Sbjct: 64  MFAIALSCPQLVELHVNVRNMINVSLDHEEPSQCLEHSQCLDLEPELVVPPVTHLDEDMD 123

Query: 61  LIADNMFIELRTSTHDEFDELDLEGEHDIPSQTFND----MVNSTVEHDSIFQPVAVESD 120
           LIAD+ FIELRT T DEFDELDLEGEHDIPS TFND    MVN   EHDSI QP+  E+D
Sbjct: 124 LIADDRFIELRTITDDEFDELDLEGEHDIPSPTFNDIANDMVNCNAEHDSIIQPLPAEND 183

Query: 121 MLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
           MLYK FMC+DKETMQHIVK F ++SH PY++V
Sbjct: 184 MLYKRFMCNDKETMQHIVKCFALRSHHPYKLV 215

BLAST of MC10g_new0173 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.40e-28
Identity = 65/153 (42.48%), Postives = 100/153 (65.36%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALP P +V L+V V +M++  ++L V  + ++  +Y+D E E   PP+ + +E   
Sbjct: 46  MFSIALPFPNMVHLYVTV-SMVDTAINLNVEPRYVE--EYVDVEPESDAPPVCHEEE--- 105

Query: 61  LIADNMFIELRTSTHDEFDELDLEG-EHDIPSQTFNDM----VNSTVEHDSIFQPVAVES 120
           ++A N + E RT T DEF+E+D +G E+++PS TF D+    V++  EHD I  P+  ++
Sbjct: 106 MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDN 165

Query: 121 DMLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
             LY G +C +KE MQH+VK F +KSH PYEVV
Sbjct: 166 TKLYTGMICENKEMMQHMVKCFAIKSHAPYEVV 192

BLAST of MC10g_new0173 vs. NCBI nr
Match: KAA0055864.1 (uncharacterized protein E6C27_scaffold104G00420 [Cucumis melo var. makuwa] >TYK24088.1 uncharacterized protein E5676_scaffold943G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 3.55e-27
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALP P +V L+V V +M+++ ++L V    ++    +DPES+   PP+ + +E   
Sbjct: 4   MFSIALPFPNMVHLYVTV-SMVDLAINLNVEPTYVEEYVDVDPESD--APPVCHEEE--- 63

Query: 61  LIADNMFIELRTSTHDEFDELDLEG-EHDIPSQTFNDM----VNSTVEHDSIFQPVAVES 120
           ++A N + E RT T+DE +E+DL+G E+++PS TF D+    V+   EHD I   + +++
Sbjct: 64  MVATNKYTEFRTETNDELEEMDLDGCEYEVPSNTFTDLDMNAVDGIQEHDPIIVLMVIDN 123

Query: 121 DMLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
             LY G +C +KE +QH+VK F +KSH  YEVV
Sbjct: 124 TKLYTGMICENKEMLQHMVKCFAIKSHASYEVV 150

BLAST of MC10g_new0173 vs. NCBI nr
Match: KAA0040603.1 (uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK05645.1 uncharacterized protein E5676_scaffold98G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.53e-26
Identity = 58/146 (39.73%), Postives = 96/146 (65.75%), Query Frame = 0

Query: 9   PQLVKLFVNVRNM-MNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMDLIADNMF 68
           P +V L+VNV  + +++ L+ +   Q  + +Q + P+SE+VV   +++ +D +++ +N +
Sbjct: 4   PNMVHLYVNVSRVGLDINLNSEPFGQLENRTQVIVPDSEIVV---SSVYDDEEIVTNNEY 63

Query: 69  IELRTSTHDEFDELDLEG-EHDIPSQTFN----DMVNSTVEHDSIFQPVAVESDMLYKGF 128
           ++ RT T DEF+E D +G EH++PS T      D+++S  EH+ I   V V++  LYKG 
Sbjct: 64  MDFRTETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPIVVHVVVDNSELYKGM 123

Query: 129 MCSDKETMQHIVKRFVVKSHRPYEVV 148
           +C DKET+QH+VK F +K H PYEVV
Sbjct: 124 ICQDKETLQHMVKYFAIKIHAPYEVV 146

BLAST of MC10g_new0173 vs. ExPASy TrEMBL
Match: A0A6J1DTV0 (uncharacterized protein LOC111023439 OS=Momordica charantia OX=3673 GN=LOC111023439 PE=4 SV=1)

HSP 1 Score: 234 bits (598), Expect = 8.58e-74
Identity = 115/148 (77.70%), Postives = 130/148 (87.84%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALPCPQL +LFVNVRNMMNV L+L+VPS+CLDHSQ L PE ELVVPP+TNLDEDMD
Sbjct: 37  MFSIALPCPQLAELFVNVRNMMNVSLNLEVPSKCLDHSQCLVPELELVVPPMTNLDEDMD 96

Query: 61  LIADNMFIELRTSTHDEFDELDLEGEHDIPSQTFNDMVNSTVEHDSIFQPVAVESDMLYK 120
           L ADN FI+L+T+  DEFDELDLEGEHDI SQTFNDMVN+  EHDSIFQPVA +++MLYK
Sbjct: 97  LTADNRFIDLKTTIDDEFDELDLEGEHDIYSQTFNDMVNNIAEHDSIFQPVAAKNEMLYK 156

Query: 121 GFMCSDKETMQHIVKRFVVKSHRPYEVV 148
           GF CSDKETMQHIVK FVV +H  YEV+
Sbjct: 157 GFRCSDKETMQHIVKHFVVNNHHTYEVI 184

BLAST of MC10g_new0173 vs. ExPASy TrEMBL
Match: A0A6J1CQN0 (uncharacterized protein LOC111013435 OS=Momordica charantia OX=3673 GN=LOC111013435 PE=4 SV=1)

HSP 1 Score: 216 bits (551), Expect = 8.51e-67
Identity = 111/152 (73.03%), Postives = 125/152 (82.24%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF IAL CPQLV+L VNVRNM+NV LD + PSQCL+HSQ LD E ELVVPP+T+LDEDMD
Sbjct: 64  MFAIALSCPQLVELHVNVRNMINVSLDHEEPSQCLEHSQCLDLEPELVVPPVTHLDEDMD 123

Query: 61  LIADNMFIELRTSTHDEFDELDLEGEHDIPSQTFND----MVNSTVEHDSIFQPVAVESD 120
           LIAD+ FIELRT T DEFDELDLEGEHDIPS TFND    MVN   EHDSI QP+  E+D
Sbjct: 124 LIADDRFIELRTITDDEFDELDLEGEHDIPSPTFNDIANDMVNCNAEHDSIIQPLPAEND 183

Query: 121 MLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
           MLYK FMC+DKETMQHIVK F ++SH PY++V
Sbjct: 184 MLYKRFMCNDKETMQHIVKCFALRSHHPYKLV 215

BLAST of MC10g_new0173 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.79e-29
Identity = 65/153 (42.48%), Postives = 100/153 (65.36%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALP P +V L+V V +M++  ++L V  + ++  +Y+D E E   PP+ + +E   
Sbjct: 46  MFSIALPFPNMVHLYVTV-SMVDTAINLNVEPRYVE--EYVDVEPESDAPPVCHEEE--- 105

Query: 61  LIADNMFIELRTSTHDEFDELDLEG-EHDIPSQTFNDM----VNSTVEHDSIFQPVAVES 120
           ++A N + E RT T DEF+E+D +G E+++PS TF D+    V++  EHD I  P+  ++
Sbjct: 106 MVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDN 165

Query: 121 DMLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
             LY G +C +KE MQH+VK F +KSH PYEVV
Sbjct: 166 TKLYTGMICENKEMMQHMVKCFAIKSHAPYEVV 192

BLAST of MC10g_new0173 vs. ExPASy TrEMBL
Match: A0A5D3DKL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00600 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 1.72e-27
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 0

Query: 1   MFTIALPCPQLVKLFVNVRNMMNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMD 60
           MF+IALP P +V L+V V +M+++ ++L V    ++    +DPES+   PP+ + +E   
Sbjct: 4   MFSIALPFPNMVHLYVTV-SMVDLAINLNVEPTYVEEYVDVDPESD--APPVCHEEE--- 63

Query: 61  LIADNMFIELRTSTHDEFDELDLEG-EHDIPSQTFNDM----VNSTVEHDSIFQPVAVES 120
           ++A N + E RT T+DE +E+DL+G E+++PS TF D+    V+   EHD I   + +++
Sbjct: 64  MVATNKYTEFRTETNDELEEMDLDGCEYEVPSNTFTDLDMNAVDGIQEHDPIIVLMVIDN 123

Query: 121 DMLYKGFMCSDKETMQHIVKRFVVKSHRPYEVV 148
             LY G +C +KE +QH+VK F +KSH  YEVV
Sbjct: 124 TKLYTGMICENKEMLQHMVKCFAIKSHASYEVV 150

BLAST of MC10g_new0173 vs. ExPASy TrEMBL
Match: A0A5D3C2N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001070 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 7.41e-27
Identity = 58/146 (39.73%), Postives = 96/146 (65.75%), Query Frame = 0

Query: 9   PQLVKLFVNVRNM-MNVPLDLKVPSQCLDHSQYLDPESELVVPPLTNLDEDMDLIADNMF 68
           P +V L+VNV  + +++ L+ +   Q  + +Q + P+SE+VV   +++ +D +++ +N +
Sbjct: 4   PNMVHLYVNVSRVGLDINLNSEPFGQLENRTQVIVPDSEIVV---SSVYDDEEIVTNNEY 63

Query: 69  IELRTSTHDEFDELDLEG-EHDIPSQTFN----DMVNSTVEHDSIFQPVAVESDMLYKGF 128
           ++ RT T DEF+E D +G EH++PS T      D+++S  EH+ I   V V++  LYKG 
Sbjct: 64  MDFRTETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPIVVHVVVDNSELYKGM 123

Query: 129 MCSDKETMQHIVKRFVVKSHRPYEVV 148
           +C DKET+QH+VK F +K H PYEVV
Sbjct: 124 ICQDKETLQHMVKYFAIKIHAPYEVV 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022156564.11.77e-7377.70uncharacterized protein LOC111023439 [Momordica charantia][more]
XP_022143566.11.76e-6673.03uncharacterized protein LOC111013435 [Momordica charantia][more]
KAA0034014.11.40e-2842.48uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
KAA0055864.13.55e-2740.52uncharacterized protein E6C27_scaffold104G00420 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0040603.11.53e-2639.73uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
A0A6J1DTV08.58e-7477.70uncharacterized protein LOC111023439 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CQN08.51e-6773.03uncharacterized protein LOC111013435 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A5A7SS316.79e-2942.48DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3DKL91.72e-2740.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C2N37.41e-2739.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0173.1MC10g_new0173.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane