Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAGAAGAAATGGGGAGCGCTGTTCCGCCTGAAGAAGGTATTGAGGAAATTCACGGTGTTGCTCCGCCTCCACCTCGCTCGCCGCCTACCTTCCCACCGGCTCCGGTCATCCGCTTTTGGCGATCGGACGGTGAGGCCTAGGCCAGTGCCGCCGCCGCAGCCACTACCGCCACCGCCGCCGCCGCCGCCGCCGCCGAGCTACGGAATTATTGAATACGATGTCGATGATTCGCGGCCGCCGATGACGCAGAGCTACGAAATTGTTGAAGACGATGTGGATGAGCGAGCTCAGAAATTCATCGATGATTTCCGTAGTCGATTGTGGTTAGAAAGACAGATTTCTCGGCAATTGAGGTACTACTACAGAAGTAGCAGCTCTGAAACGGAGTATGAAGACGGATCTCCGCCG
mRNA sequence
ATGGGAGAGAAGAAATGGGGAGCGCTGTTCCGCCTGAAGAAGGTATTGAGGAAATTCACGGTGTTGCTCCGCCTCCACCTCGCTCGCCGCCTACCTTCCCACCGGCTCCGGTCATCCGCTTTTGGCGATCGGACGGTGAGGCCTAGGCCAGTGCCGCCGCCGCAGCCACTACCGCCACCGCCGCCGCCGCCGCCGCCGCCGAGCTACGGAATTATTGAATACGATGTCGATGATTCGCGGCCGCCGATGACGCAGAGCTACGAAATTGTTGAAGACGATGTGGATGAGCGAGCTCAGAAATTCATCGATGATTTCCGTAGTCGATTGTGGTTAGAAAGACAGATTTCTCGGCAATTGAGGTACTACTACAGAAGTAGCAGCTCTGAAACGGAGTATGAAGACGGATCTCCGCCG
Coding sequence (CDS)
ATGGGAGAGAAGAAATGGGGAGCGCTGTTCCGCCTGAAGAAGGTATTGAGGAAATTCACGGTGTTGCTCCGCCTCCACCTCGCTCGCCGCCTACCTTCCCACCGGCTCCGGTCATCCGCTTTTGGCGATCGGACGGTGAGGCCTAGGCCAGTGCCGCCGCCGCAGCCACTACCGCCACCGCCGCCGCCGCCGCCGCCGCCGAGCTACGGAATTATTGAATACGATGTCGATGATTCGCGGCCGCCGATGACGCAGAGCTACGAAATTGTTGAAGACGATGTGGATGAGCGAGCTCAGAAATTCATCGATGATTTCCGTAGTCGATTGTGGTTAGAAAGACAGATTTCTCGGCAATTGAGGTACTACTACAGAAGTAGCAGCTCTGAAACGGAGTATGAAGACGGATCTCCGCCG
Protein sequence
MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPPPPPPPPPSYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQLRYYYRSSSSETEYEDGSPP
Homology
BLAST of MC10g1377 vs. NCBI nr
Match:
XP_022145291.1 (ELL-associated factor 1-like [Momordica charantia])
HSP 1 Score: 261 bits (668), Expect = 1.23e-87
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP
Sbjct: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
Query: 61 PPPPPPP-SYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120
PPPPPPP SYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL
Sbjct: 61 PPPPPPPPSYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120
Query: 121 RYYYRSSSSETEYEDGSPP 138
RYYYRSSSSETEYEDGSPP
Sbjct: 121 RYYYRSSSSETEYEDGSPP 139
BLAST of MC10g1377 vs. NCBI nr
Match:
XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])
HSP 1 Score: 79.7 bits (195), Expect = 6.31e-16
Identity = 66/152 (43.42%), Postives = 79/152 (51.97%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHL----ARRLPSHRLRSSAFGDRTVRPRPVPPPQP 60
M EKK + RLKK +RK T LLRL+L ARR PS RLRS +F DRTV
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTV---------- 60
Query: 61 LPPPPPPPPPPSYGIIEYDVDDS----------RPPMTQSYEIVEDDVDERAQKFIDDFR 120
G+ + D+ + Y EDDVD+R+Q FID+F
Sbjct: 61 -------------GLRSFLEDEEIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFL 120
Query: 121 SRLWLERQISRQLRYYYRSSSSETEYEDGSPP 138
RL LERQIS QLRYY R +SS TE E+ SPP
Sbjct: 121 RRLRLERQISLQLRYY-RINSSGTEDEERSPP 128
BLAST of MC10g1377 vs. NCBI nr
Match:
KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 71.6 bits (174), Expect = 7.37e-13
Identity = 63/143 (44.06%), Postives = 74/143 (51.75%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
M +KK LFRLKK K T LRL +ARR S RLRS DRT R
Sbjct: 1 MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLR----------- 60
Query: 61 PPPPPPPSYGIIEYDVDDS-----RPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQI 120
S+ E V++ + SY EDDVD+R+Q FID F +L LERQI
Sbjct: 61 -------SFLEDERIVENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQI 120
Query: 121 SRQLRYYYRSSSSETEYEDGSPP 138
S QLRY R +SSETE E+ SPP
Sbjct: 121 SLQLRYC-RVNSSETESEEKSPP 124
BLAST of MC10g1377 vs. NCBI nr
Match:
KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])
HSP 1 Score: 64.3 bits (155), Expect = 4.87e-10
Identity = 60/149 (40.27%), Postives = 70/149 (46.98%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
M EKK RLKK L K T ++RL L R S RL S DR V
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKV-------------- 60
Query: 61 PPPPPPPSYGIIEYDVDDSR-----------PPMTQSYEIVEDDVDERAQKFIDDFRSRL 120
GI D SR + Y E+DVD+RA+ FI++FR +L
Sbjct: 61 ---------GIRIVLEDQSRIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQL 120
Query: 121 WLERQISRQLRYYYRSSSSETEYEDGSPP 138
LERQIS QLRYY R +S ETEYE SPP
Sbjct: 121 RLERQISLQLRYY-RVNSYETEYEQISPP 125
BLAST of MC10g1377 vs. NCBI nr
Match:
KAG8491128.1 (hypothetical protein CXB51_014290 [Gossypium anomalum])
HSP 1 Score: 58.9 bits (141), Expect = 5.40e-08
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLA--------RRLPSHRLRSSAFGDRTVRPRPVP 60
MG + W + RLK+ +++ LLR +L R L + RL + +F DR
Sbjct: 1 MGRENWSVMGRLKRAVKQINSLLRFNLTKWRSSCFLRSLSTRRLPTLSFNDRLRL----- 60
Query: 61 PPQPLPPPPPPPPPPSYGII-----EYDVDDSRPPM-----TQSYEIVEDDVDERAQKFI 120
+G I E + + + P+ T SY +DDVD+RA+ FI
Sbjct: 61 ----------------HGCIMDEEEEEEESNKKGPVRALHRTTSYASADDDVDQRAELFI 118
BLAST of MC10g1377 vs. ExPASy TrEMBL
Match:
A0A6J1CVX6 (ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4 SV=1)
HSP 1 Score: 261 bits (668), Expect = 5.94e-88
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP
Sbjct: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
Query: 61 PPPPPPP-SYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120
PPPPPPP SYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL
Sbjct: 61 PPPPPPPPSYGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQL 120
Query: 121 RYYYRSSSSETEYEDGSPP 138
RYYYRSSSSETEYEDGSPP
Sbjct: 121 RYYYRSSSSETEYEDGSPP 139
BLAST of MC10g1377 vs. ExPASy TrEMBL
Match:
A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 3.06e-16
Identity = 66/152 (43.42%), Postives = 79/152 (51.97%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHL----ARRLPSHRLRSSAFGDRTVRPRPVPPPQP 60
M EKK + RLKK +RK T LLRL+L ARR PS RLRS +F DRTV
Sbjct: 1 MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTV---------- 60
Query: 61 LPPPPPPPPPPSYGIIEYDVDDS----------RPPMTQSYEIVEDDVDERAQKFIDDFR 120
G+ + D+ + Y EDDVD+R+Q FID+F
Sbjct: 61 -------------GLRSFLEDEEIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFL 120
Query: 121 SRLWLERQISRQLRYYYRSSSSETEYEDGSPP 138
RL LERQIS QLRYY R +SS TE E+ SPP
Sbjct: 121 RRLRLERQISLQLRYY-RINSSGTEDEERSPP 128
BLAST of MC10g1377 vs. ExPASy TrEMBL
Match:
A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 2.36e-10
Identity = 60/149 (40.27%), Postives = 70/149 (46.98%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPP 60
M EKK RLKK L K T ++RL L R S RL S DR V
Sbjct: 1 MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKV-------------- 60
Query: 61 PPPPPPPSYGIIEYDVDDSR-----------PPMTQSYEIVEDDVDERAQKFIDDFRSRL 120
GI D SR + Y E+DVD+RA+ FI++FR +L
Sbjct: 61 ---------GIRIVLEDQSRIAENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQL 120
Query: 121 WLERQISRQLRYYYRSSSSETEYEDGSPP 138
LERQIS QLRYY R +S ETEYE SPP
Sbjct: 121 RLERQISLQLRYY-RVNSYETEYEQISPP 125
BLAST of MC10g1377 vs. ExPASy TrEMBL
Match:
A0A1U8ITS3 (uncharacterized protein LOC107900356 OS=Gossypium hirsutum OX=3635 GN=LOC107900356 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 9.77e-08
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLA--------RRLPSHRLRSSAFGDRTVRPRPVP 60
MG + W + RLK+ +++ LLR +L R L + R + +F DR
Sbjct: 1 MGRENWSVMGRLKRAVKQINSLLRFNLTKWRFSCFLRSLSTRRRPTLSFNDRLGL----- 60
Query: 61 PPQPLPPPPPPPPPPSYGII---EYDVDDSRPPM-----TQSYEIVEDDVDERAQKFIDD 120
+G I E + + + P+ T SY +DDVD+RA+ FI +
Sbjct: 61 ----------------HGCIVDEEEEESNKKGPVRALHRTTSYASADDDVDQRAELFISN 116
BLAST of MC10g1377 vs. ExPASy TrEMBL
Match:
A0A5D2UIM6 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G126500v1 PE=4 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 9.77e-08
Identity = 44/137 (32.12%), Postives = 65/137 (47.45%), Query Frame = 0
Query: 1 MGEKKWGALFRLKKVLRKFTVLLRLHLA--------RRLPSHRLRSSAFGDRTVRPRPVP 60
MG + W + RLK+ +++ LLR +L R L + R + +F DR
Sbjct: 1 MGRENWSVMGRLKRAVKQINSLLRFNLTKWRFSCFLRSLSTRRRPTLSFNDRLGL----- 60
Query: 61 PPQPLPPPPPPPPPPSYGII---EYDVDDSRPPM-----TQSYEIVEDDVDERAQKFIDD 120
+G I E + + + P+ T SY +DDVD+RA+ FI +
Sbjct: 61 ----------------HGCIVDEEEEESNKKGPVRALHRTTSYASADDDVDQRAELFISN 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022145291.1 | 1.23e-87 | 99.28 | ELL-associated factor 1-like [Momordica charantia] | [more] |
XP_022145292.1 | 6.31e-16 | 43.42 | uncharacterized protein LOC111014780 [Momordica charantia] | [more] |
KAG6596691.1 | 7.37e-13 | 44.06 | hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0052985.1 | 4.87e-10 | 40.27 | hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... | [more] |
KAG8491128.1 | 5.40e-08 | 32.37 | hypothetical protein CXB51_014290 [Gossypium anomalum] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CVX6 | 5.94e-88 | 99.28 | ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4... | [more] |
A0A6J1CW64 | 3.06e-16 | 43.42 | uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A5D3CHZ5 | 2.36e-10 | 40.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1U8ITS3 | 9.77e-08 | 32.12 | uncharacterized protein LOC107900356 OS=Gossypium hirsutum OX=3635 GN=LOC1079003... | [more] |
A0A5D2UIM6 | 9.77e-08 | 32.12 | Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G126500v1 P... | [more] |
Match Name | E-value | Identity | Description | |