MC09g_new0351 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0351
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationMC09: 16867470 .. 16870146 (+)
RNA-Seq ExpressionMC09g_new0351
SyntenyMC09g_new0351
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTAAGATAAGTTCTTGAATTACATCAAAGATATGGCATTGCCGTTGGAATTGCTATTGGGCTGCATTTTTTGCATGAAGAATGTCTTATAGGTCCTTTAATACATAGAGATGTCCATCGAAGCAACATACTGCTCGCACATGATTTTGTTCCATAATCCGAAAGTGACTTGGGAGGAGAAGGAGGAGTGTCAGGATTCTAGTTGCCCCTCATCCCATGACGAAGTGTGGAAATCATGGCGGCCTTGATTGAGTGCCCCTCTAAAATCCCTGGCAAACTCGGGCTCGGGATCTTGTACAATGGGAAGCCCCTCTTCTCTTCGTCTATTGCTCGAGCGATAGCAGCAAATTGCAGGCTCGAGAGACCTAAAATATGAAAATATGAAAATGGAAGGACTCCAAGAAGAAGTCAAGCCGGAGGCCAAGAAAAGCGAGCTTGGTAAATAATTAATCGCATCCTTTTCTTCTATTACTATATAGGCTTTTCAAGGCTTGGTCATCAAACCATTAATGTTAAATTTTTCCAGCTTCCTAGATTTGTGGTCGATTTTTTTTGTTCTGGAGCAATTATGATTAGATTTTAATAGATCCATTAAAATTTGACTCTAAATTTATAATTTACGCAGAATATTATTTCGGTGGGTGCTTACCTGTGCGCCAATCAAAAGAATGTACCGTTATGCGAGGGATTCAAGTTCCAGCCGTTCGATTGATTCATGGGTGTGACTGCTGCCTCAATACTCAGTCGCCTCTTCCAAATTAGTCCTCCTCTCGCACGCTTGTTGAGGCTCGAAAGGTTGAGTCTCATTTGGTTATGTTTCGCCCCACGTCGCCTATTTTTCTGTTGAATCAAGCCATTGAAGCCTATGGTAAATGTGGGTGTTTGGAGGATGCAGGGGAGTTGTTCGAGGAAATGCCTCATAGAGATGGGGGATCGTCGAATGCGATGATAACAGCATATACCCAGAATGGGTATGCTTTGGGAGCATTGAATTTGTTTTCGGATATGAATGAATCTGGTGTTCGTGCTACTGAGATATTTTTAGCCAGTATTCTTGGGTCTTGCGGAGCTGCATTGGCTCTTCACTTTTCGAGGCAAATTCACGGGCATATTGTGAAATCTTGCTTCCTTGGCATTGTAATTCTTGAGAATTCTCTTGTTGATGTCTATGGAAAGTGCAGGCTTATAAATGATGCACGCAGCATATTTGATGAAATTTAGAAGTGCGATGAATGTGAATGTTAGGTGTTATCTTGAGGTGGGCAATGGAAGAGAGGCAGTGTCGTGTCGATGTTTTACCAAATGTTCCGAGAAGAAGTGATTCCATTGAGTTTTACCTTTTCTTGCTTGTTCAAGTATGGCAGCACTTGTACAAGGTATGCAAATTCATGGTGGTGTAGTTAAAGTAGGTTTTGAAGAGGATGATGTTATTTCAAGCTCTTTAATTGACATGCATATGAAGTGTGGAACATTAGAAAATGCTCACCAAGTATTTAACCAGCCCAATTCAAGTAATCTGATTTCCTGGACTTCACTGTTACATGGATACATGCTAGGAAAGTCCAAAAGCTAGGGAGCTTTTCAATGAAATGCCTGAACGCAATGTGATTTCATGGAATGCTATGTTGGCAGGATATGTTGATTCCTCTCAATGGGAAGAGGCGTTAGACTTTGTCCATTTGATGTGCAGTTCGATTAAGGAAATTGATCACGTAACTCTTCGCCTGATACTGAATGTGTGTACCGACCGTCTAGATGTTGCAATAGGGAAGCAGGTTCATGGTTTTGTTTATAAAATTGGTTTCTATGCTGATCTCTATATTGGTAGTGCTCTTCTTGCATGTATGGTAAATGTGGGAGCTTGAAAAGTACCAGGGTTTGGTTTTACCGAATGAGTCAATGGCGAGATGAAGTTTCCTGGAATGCTCTGGTGTCACTAGCTATGCTCGTCGTGGCATGAGTGAACAGGCCATGACGGTTTTATCAGAGATGCAATGGGAAACAACTCCTAGTAAATTCACTTTTGCAACTATTTTATGAGCCTGTGCAAACACTTGTGCAATAGAGCAAGGCAAGCAAATCCATGGCCTCATGATTAGGAGTAAATTGTGAGAGAGACATTGTAATTACCGGAGCTTTAGTTGACATGTACTGCAGATGCCTTTATCTTGAGTACGCTCTCAAGGTTTTTGAAAATGCATCTTCCCGTGATGTGATTCTGTGGAACTCTATAATTTTAGGATGTTGCCACAACAAAAGGGACGATAGTAATCGAGTTATTTCGATTGATGACAATGGAGGAAGGCGTGAAACCAGGCCATGTGACCTTTCAAGGTATTTTGCTTCCTTGTGTATATGAAAATCTTGTTGAGTTGGGTAGGTAGTATTTTGATTCAATGAGTGACATACCTCGACTGGAGCACTACGAGTGCATGAATGCGACATTGAATCATGGACAAGCTAAAAAATTTAGAAAATACTTGGCTCCTCAACAGTAAAGAACAATCATTGTCTTAAACTATATGGGTTGTTTGGTCTCGTTCGACGTTCATGGGGTATTGAAAGTTTTTCATGAAATTAAAGAGAATGACATTATATCCTGGAACATATGTTTGAAGGGTTTGTTTCGATTTGAGTGATGTTGAAGGTCCACGCCATCTGTTTGATGTAATGACG

mRNA sequence

ATGGCAGCACTTGTACAAGGTATGCAAATTCATGGTGGTGTAGTTAAAGTAGGTTTTGAAGAGGATGATGTTATTTCAAGCTCTTTAATTGACATGCATATGAAGTGTGGAACATTAGAAAATGCTCACCAAGTATTTAACCAGCCCAATTCAAGTAATCTGATTTCCTGGACTTCACTGTTACATGGATACATGCTAGGAAAGTCCAAAAGCTAG

Coding sequence (CDS)

ATGGCAGCACTTGTACAAGGTATGCAAATTCATGGTGGTGTAGTTAAAGTAGGTTTTGAAGAGGATGATGTTATTTCAAGCTCTTTAATTGACATGCATATGAAGTGTGGAACATTAGAAAATGCTCACCAAGTATTTAACCAGCCCAATTCAAGTAATCTGATTTCCTGGACTTCACTGTTACATGGATACATGCTAGGAAAGTCCAAAAGCTAG

Protein sequence

MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGYMLGKSKS
Homology
[Close]
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match: Q9ZQ74 (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E47 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-09
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           ++AL QG   HG +VK G E    + +SL+DM++KCG + NA +VFN+ +  +L+ WT++
Sbjct: 255 LSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 314

Query: 61  LHGY 65
           + GY
Sbjct: 315 IVGY 318

[Close]
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-09
Identity = 24/58 (41.38%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 7   GMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGY 65
           G+QIHG +VK+G+ +D  + +SL+  + +CG L++A +VF++ +  N++SWTS++ GY
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

[Close]
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match: Q9LR69 (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-09
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 4   LVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHG 63
           L QG +IHG ++  G   + V+ SSL+DM+ KCG++  A QVFN  +  N +SW++LL G
Sbjct: 281 LKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGG 340

Query: 64  Y 65
           Y
Sbjct: 341 Y 341

[Close]
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match: O04659 (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-09
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 4   LVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHG 63
           L +G +IH   VK GFE D+ ++S+L+DM+ KC  LE A +VF +    +L++W S++ G
Sbjct: 224 LERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKG 283

Query: 64  YML-GKSKS 72
           Y+  G SKS
Sbjct: 284 YVAKGDSKS 292

[Close]
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match: Q9FXH1 (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX=3702 GN=DYW7 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-09
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 6   QGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGY 65
           QG ++H   VK+GF +D ++ +SL+DM+ KCG LE+A +VF+   + ++ +W S++ GY
Sbjct: 370 QGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGY 428

[Close]
BLAST of MC09g_new0351 vs. NCBI nr
Match: XP_022141462.1 (pentatricopeptide repeat-containing protein At3g26540-like [Momordica charantia] >XP_022141463.1 pentatricopeptide repeat-containing protein At3g26540-like [Momordica charantia])

HSP 1 Score: 123 bits (309), Expect = 9.58e-31
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAALVQGMQIHG VVKVGFEEDDVISSSLIDM++KCGTLENAHQVFNQPNSSNLISWTS+
Sbjct: 273 MAALVQGMQIHGVVVKVGFEEDDVISSSLIDMYVKCGTLENAHQVFNQPNSSNLISWTSM 332

Query: 61  LHGYML 66
           L+GY +
Sbjct: 333 LYGYAM 338

[Close]
BLAST of MC09g_new0351 vs. NCBI nr
Match: XP_023550069.1 (pentatricopeptide repeat-containing protein At3g26540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (269), Expect = 2.60e-25
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EED+VISSSLIDM++KCGTLENAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLENAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. NCBI nr
Match: XP_022938461.1 (pentatricopeptide repeat-containing protein At3g26540 [Cucurbita moschata])

HSP 1 Score: 107 bits (266), Expect = 6.63e-25
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EED+VISSSLIDM++KCGTL+NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. NCBI nr
Match: KAG6578928.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107 bits (266), Expect = 6.75e-25
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EED+VISSSLIDM++KCGTL+NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. NCBI nr
Match: KAG7016451.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107 bits (266), Expect = 6.76e-25
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EED+VISSSLIDM++KCGTL+NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match: A0A6J1CJX1 (pentatricopeptide repeat-containing protein At3g26540-like OS=Momordica charantia OX=3673 GN=LOC111011852 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 4.64e-31
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAALVQGMQIHG VVKVGFEEDDVISSSLIDM++KCGTLENAHQVFNQPNSSNLISWTS+
Sbjct: 273 MAALVQGMQIHGVVVKVGFEEDDVISSSLIDMYVKCGTLENAHQVFNQPNSSNLISWTSM 332

Query: 61  LHGYML 66
           L+GY +
Sbjct: 333 LYGYAM 338

[Close]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match: A0A6J1FD79 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita moschata OX=3662 GN=LOC111444693 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 3.21e-25
Identity = 49/66 (74.24%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EED+VISSSLIDM++KCGTL+NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match: A0A6J1K1B7 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita maxima OX=3661 GN=LOC111489740 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 2.85e-24
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG E D+VISSSLIDM++KCGTLENAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEGDEVISSSLIDMYVKCGTLENAHQVFIQPSSRNLISWTSM 333

Query: 61  LHGYML 66
           ++GY +
Sbjct: 334 VYGYAM 339

[Close]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match: A0A5D3DJG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001110 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 3.44e-23
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EE++VISSSLIDM++KCGTL NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGY 64
           ++ Y
Sbjct: 334 VYAY 337

[Close]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match: A0A1S3B4H5 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucumis melo OX=3656 GN=LOC103485666 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 3.44e-23
Identity = 47/64 (73.44%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           MAAL++G QIHG VVKVG EE++VISSSLIDM++KCGTL NAHQVF QP+S NLISWTS+
Sbjct: 274 MAALIEGRQIHGIVVKVGLEENEVISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSM 333

Query: 61  LHGY 64
           ++ Y
Sbjct: 334 VYAY 337

[Close]
BLAST of MC09g_new0351 vs. TAIR 10
Match: AT2G03380.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 1   MAALVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSL 60
           ++AL QG   HG +VK G E    + +SL+DM++KCG + NA +VFN+ +  +L+ WT++
Sbjct: 255 LSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 314

Query: 61  LHGY 65
           + GY
Sbjct: 315 IVGY 318

[Close]
BLAST of MC09g_new0351 vs. TAIR 10
Match: AT1G03540.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 4   LVQGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHG 63
           L QG +IHG ++  G   + V+ SSL+DM+ KCG++  A QVFN  +  N +SW++LL G
Sbjct: 281 LKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGG 340

Query: 64  Y 65
           Y
Sbjct: 341 Y 341

[Close]
BLAST of MC09g_new0351 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 24/58 (41.38%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 7   GMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGY 65
           G+QIHG +VK+G+ +D  + +SL+  + +CG L++A +VF++ +  N++SWTS++ GY
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

[Close]
BLAST of MC09g_new0351 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-10
Identity = 24/58 (41.38%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 7   GMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGY 65
           G+QIHG +VK+G+ +D  + +SL+  + +CG L++A +VF++ +  N++SWTS++ GY
Sbjct: 153 GIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

[Close]
BLAST of MC09g_new0351 vs. TAIR 10
Match: AT1G19720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-10
Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 6   QGMQIHGGVVKVGFEEDDVISSSLIDMHMKCGTLENAHQVFNQPNSSNLISWTSLLHGY 65
           QG ++H   VK+GF +D ++ +SL+DM+ KCG LE+A +VF+   + ++ +W S++ GY
Sbjct: 370 QGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNKDVYTWNSMITGY 428

The following BLAST results are available for this feature:
BLAST of MC09g_new0351 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZQ741.8e-0942.19Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidop... [more]
Q9LUJ22.4e-0941.38Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
Q9LR692.4e-0945.90Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana OX... [more]
O046595.3e-0943.48Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX... [more]
Q9FXH15.3e-0940.68Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana OX... [more]
BLAST of MC09g_new0351 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141462.19.58e-3189.39pentatricopeptide repeat-containing protein At3g26540-like [Momordica charantia]... [more]
XP_023550069.12.60e-2575.76pentatricopeptide repeat-containing protein At3g26540 [Cucurbita pepo subsp. pep... [more]
XP_022938461.16.63e-2574.24pentatricopeptide repeat-containing protein At3g26540 [Cucurbita moschata][more]
KAG6578928.16.75e-2574.24Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7016451.16.76e-2574.24Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of MC09g_new0351 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CJX14.64e-3189.39pentatricopeptide repeat-containing protein At3g26540-like OS=Momordica charanti... [more]
A0A6J1FD793.21e-2574.24pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita moschata OX=3... [more]
A0A6J1K1B72.85e-2474.24pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita maxima OX=366... [more]
A0A5D3DJG93.44e-2373.44Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B4H53.44e-2373.44pentatricopeptide repeat-containing protein At3g26540 OS=Cucumis melo OX=3656 GN... [more]
BLAST of MC09g_new0351 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G03380.11.3e-1042.19Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G03540.11.7e-1045.90Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT3G22690.11.7e-1041.38CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
AT3G22690.21.7e-1041.38INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro... [more]
AT1G19720.13.8e-1040.68Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..69
e-value: 1.1E-7
score: 33.6
NoneNo IPR availablePANTHERPTHR47926:SF186OS11G0482400 PROTEINcoord: 1..64
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0351.1MC09g_new0351.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding