MC09g_new0034 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0034
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ty3-gypsy retrotransposon protein
Location	MC09: 1718124 .. 1719939 (-)
RNA-Seq Expression	MC09g_new0034
Synteny	MC09g_new0034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATCTAGTTTGACTGTTTGAGTTACTTTTATGAACGAATAATCTTTATCTTTATTTACTAAATGAAAAATTATTATAAACTGAAAAAATAAAAATTGTAAAAGTAATCCCATTGGTTGGAAAGTGGAACAATGTCTTGAAACTTGAAGATTCATTCACTATCACCGCCACGACGAGGAGGAGTTACCGTTAGGCCTGTATGTGAGGAGGGGCAATATGGTAAATGTGGTATCTGACAGTTAGGATTTCTGTAGAAGGGAATCGGTTATCTTTTCGTTAGTCCTCGAGTACAGCAGAATTCGCAGCCCTCTCCTCTCCCATGGCAGGTTGGTAGCTTCTACGTTGATTCACAGAGGAATTGGGTTTGTGACAGCGACTATGCGACCTCGGAAAACGGAGAGGAAATGCGAAAAAATGTGAACAAAAACAGAGACAAATCGTGGCTGCGGTGAAATCCGAATTTGGAGGAGGAAATTTGAAATCGGTTGTGGAATGGGGAGTGGAGGATTCAGTCATGCGAGGCAAGGGACTTAGAGATGAAGATGATCGCTCAGGTCGTCGGAAGGTCGTCGGAACGGGAGAAGCTTCGGTAAAGATGTCGGTATTTTCTGAGGAGGGTGCTCTGTGGGAGAGGTTCCTTGCGATTAAGCAGGAGGGAACCGTCGCTGAGTATAGGACGCGTTTCAAGATTCTCTCCACGCCGCTGCTGCCGGGAATCTCCGAGGAGTTGTTAGAGGCCGTCTTCATGAACGGCTTGGATCCACTCCTCCGAGCAGAGGTACGTTGCTTCAGCCCTAATGGACTTGATGAAATGATCCGGAAGGCGCTGTTCGTGGTGGAGAAGTACCGGGTACTGCAAAAAATATCTCAAGAGTCCAATGGTGGTACCTTGGGTGAAACCATTGCTCCACGAACTGATCCAGATTCAACTTACCAAACATTATCTGTTACAGAGTATCTATCGAAGAAGGAAAGGGGTTTATGCTTCCGATGCGACGAGAAATTAATCGTGGGCCATAAGTGCAGAAACCGCGAGCTAAGAGTTTTCTTGGTTCAGGACGAAGAGGATGAGGAACTTCCGAACAACGATACGAAGCCAACGGAAACAGGGGACGATGTGGGGCGGACGGCACCGGGGAGGATGATGTTCCGAGTTGAGATTGAAGATTCAGAAGTTGTTGTACTCATTGGTTCCGGCTCCACCCACAACTTTGTTTCTCAGAGACTAATGGAAAAGCTACAATTGCCGCTGAGTGACACTCCGAACTACAGTGTGGTCTTGCCAACGGGGGCGACAGTGGAAGGGAAAGGAATATTCAAGGCAGTGGTGTTAAATTTGCCTGGTTTGACTGTGATTGAAGATTTTATATACCTCTGGACTTGAGGGGATTTGATGAAATTTTGGGAGTGGAATGGCTCAGAAAGCTCGGGCCTGTGGAAGTAAATTTTAGGAATTTGGTTATGAAATTTCAGAAGGGAGATTCGACTGTCACGCTTAAGGGGGATCCCACGTTGCCCTCCAATGGTTAGCTAGGAGGTGGCGTGGTATTTGTAGTAGTAGGGGTTTCTACCCACTTGGTTTCAAAGAAACTGCATCCTTCTTATTGAACTTTTTATAGGAAAGAATGAAGAAGAATTAGAGGAAATGCAGATTAGGGACTTCTTCGTTTTTTGTTTTTAGTTTCTTTCAGTTTTTGAGTAATGTGAAGACAGCTTGGTAGTTGTTCTATTTTAATTTTGTAGTAGTGAATCATTATGAGTTGAACTGGATGTTTTTGAAGTGTTTTGACAATCAATGAAGGCTAATTTCACC

mRNA sequence

ATGCGAGGCAAGGGACTTAGAGATGAAGATGATCGCTCAGGTCGTCGGAAGGTCGTCGGAACGGGAGAAGCTTCGGTAAAGATGTCGGTATTTTCTGAGGAGGGTGCTCTGTGGGAGAGGTTCCTTGCGATTAAGCAGGAGGGAACCGTCGCTGAGTATAGGACGCGTTTCAAGATTCTCTCCACGCCGCTGCTGCCGGGAATCTCCGAGGAGTTGTTAGAGGCCGTCTTCATGAACGGCTTGGATCCACTCCTCCGAGCAGAGGTACGTTGCTTCAGCCCTAATGGACTTGATGAAATGATCCGGAAGGCGCTGTTCGTGGTGGAGAAGTACCGGGTACTGCAAAAAATATCTCAAGAGTCCAATGGTGGTACCTTGGGTGAAACCATTGCTCCACGAACTGATCCAGATTCAACTTACCAAACATTATCTGTTACAGAGTATCTATCGAAGAAGGAAAGGGGTTTATGCTTCCGATGCGACGAGAAATTAATCGTGGGCCATAAGTGCAGAAACCGCGAGCTAAGAGTTTTCTTGGTTCAGGACGAAGAGGATGAGGAACTTCCGAACAACGATACGAAGCCAACGGAAACAGGGGACGATGTGGGGCGGACGGCACCGGGGAGGATGATGTTCCGAGTTGAGATTGAAGATTCAGAAGTTGTTGTACTCATTGGTTCCGGCTCCACCCACAACTTTGTTTCTCAGAGACTAATGGAAAAGCTACAATTGCCGCTGAGTGACACTCCGAACTACAGTGTGGTCTTGCCAACGGGGGCGACAGTGGAAGGGAAAGGAATATTCAAGGCAGTGGTGTTAAATTTGCCTGGTTTGACTGTGATTGAAGATTTTATATACCTCTGGACTTGA

Coding sequence (CDS)

ATGCGAGGCAAGGGACTTAGAGATGAAGATGATCGCTCAGGTCGTCGGAAGGTCGTCGGAACGGGAGAAGCTTCGGTAAAGATGTCGGTATTTTCTGAGGAGGGTGCTCTGTGGGAGAGGTTCCTTGCGATTAAGCAGGAGGGAACCGTCGCTGAGTATAGGACGCGTTTCAAGATTCTCTCCACGCCGCTGCTGCCGGGAATCTCCGAGGAGTTGTTAGAGGCCGTCTTCATGAACGGCTTGGATCCACTCCTCCGAGCAGAGGTACGTTGCTTCAGCCCTAATGGACTTGATGAAATGATCCGGAAGGCGCTGTTCGTGGTGGAGAAGTACCGGGTACTGCAAAAAATATCTCAAGAGTCCAATGGTGGTACCTTGGGTGAAACCATTGCTCCACGAACTGATCCAGATTCAACTTACCAAACATTATCTGTTACAGAGTATCTATCGAAGAAGGAAAGGGGTTTATGCTTCCGATGCGACGAGAAATTAATCGTGGGCCATAAGTGCAGAAACCGCGAGCTAAGAGTTTTCTTGGTTCAGGACGAAGAGGATGAGGAACTTCCGAACAACGATACGAAGCCAACGGAAACAGGGGACGATGTGGGGCGGACGGCACCGGGGAGGATGATGTTCCGAGTTGAGATTGAAGATTCAGAAGTTGTTGTACTCATTGGTTCCGGCTCCACCCACAACTTTGTTTCTCAGAGACTAATGGAAAAGCTACAATTGCCGCTGAGTGACACTCCGAACTACAGTGTGGTCTTGCCAACGGGGGCGACAGTGGAAGGGAAAGGAATATTCAAGGCAGTGGTGTTAAATTTGCCTGGTTTGACTGTGATTGAAGATTTTATATACCTCTGGACTTGA

Protein sequence

MRGKGLRDEDDRSGRRKVVGTGEASVKMSVFSEEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSPNGLDEMIRKALFVVEKYRVLQKISQESNGGTLGETIAPRTDPDSTYQTLSVTEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEEDEELPNNDTKPTETGDDVGRTAPGRMMFRVEIEDSEVVVLIGSGSTHNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFIYLWT

Homology

[Close]

BLAST of MC09g_new0034 vs. NCBI nr
Match: KAA0037088.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 4.45e-52
Identity = 108/279 (38.71%), Postives = 164/279 (58.78%), Query Frame = 0


Query: 33  EEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCF 92
           E   +  +FLA+KQEG+V+EY  RF+ LS PL P I+EE+LE  F NGLDP++R EV   
Sbjct: 216 EHRTVCAKFLAVKQEGSVSEYLQRFEELSVPL-PEIAEEVLEGTFTNGLDPIIRKEVFSM 275

Query: 93  SPNGLDEMIRKALFVVEKYRVLQKISQESNGGTLGETIAPRTDPDSTYQTLSV------- 152
              GL++MI  A    EK       S  +   TL E + P     +T Q  +V       
Sbjct: 276 RAVGLEDMIEAAELAEEKIEE----SPTTKMVTLAEKVLPHPSNSNTVQAKAVGGGGRRE 335

Query: 153 --------TEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEEDE------ELPNN 212
                   +E  ++KE+GLC+RCDE    GH+C+N++L +F+V D+ D+      E+   
Sbjct: 336 HPYRRWTDSELQARKEKGLCYRCDEPFSKGHRCKNKKLHLFVVADDLDDAEMGEMEIEEG 395

Query: 213 DTKPTETGD-----DVGRTAPGRMMFRVEIEDSEVVVLIGSGSTHNFVSQRLMEKLQLPL 272
             + +   D      VG TAPG    + ++E+ EVVV+I  G+THNF+S +L+E+L++P 
Sbjct: 396 MVEVSPIVDLSLNSVVGLTAPGTFKIKGKVEEREVVVMIDCGATHNFISLKLVEELKVPT 455

Query: 273 SDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           ++T NY V++ +G  V+GKG+   V++ LPGLTV++DF+
Sbjct: 456 TETTNYGVIMGSGKAVQGKGMCTGVIVGLPGLTVVDDFL 489

[Close]

BLAST of MC09g_new0034 vs. NCBI nr
Match: RVW41094.1 (hypothetical protein CK203_069772 [Vitis vinifera])

HSP 1 Score: 181 bits (459), Expect = 2.85e-49
Identity = 107/294 (36.39%), Postives = 171/294 (58.16%), Query Frame = 0


Query: 32  SEEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRC 91
           ++EG+L E+FLA++Q+GT+  YR  F+IL+TPL  GISEE++E+ FMNGL P +RAE+R 
Sbjct: 128 TQEGSLCEQFLAVRQQGTMVAYRREFEILATPL-KGISEEVMESTFMNGLLPEIRAELRL 187

Query: 92  FSPNGLDEMIRKALFVVEKYRVLQ--------------KISQESNGGT--LGETIAPRTD 151
             P GL  ++  A  V ++   ++              K+   +N G   +GE    R  
Sbjct: 188 LKPYGLGHLMEMAQRVEDRNLAMRAACEPNGPNGPKSTKMLSSANRGEWKIGENFQTRAV 247

Query: 152 P----------DSTYQTLSVTEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEED 211
                      +   + L+ +E  +++E+GLCF+C+EK   GH+C+ +EL+V LV ++E+
Sbjct: 248 AVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCK-KELQVLLVHEDEE 307

Query: 212 EELPNNDTKPTET--------------GDDVGRTAPGRMMFRVEIEDSEVVVLIGSGSTH 271
           E+    D + TE                  V  T PG M  +  I   EV++L+ SG+TH
Sbjct: 308 EDDNQFDDRATEEPALIKLKDAVELSLNSVVDLTTPGTMKIKGMIGSKEVIILVDSGATH 367

Query: 272 NFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           NF+S  L+++L LPL+ T +Y V++ TG +V+GKGI + V +++ GLTV+EDF+
Sbjct: 368 NFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFL 419

[Close]

BLAST of MC09g_new0034 vs. NCBI nr
Match: KAA0045702.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99580.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 4.09e-49
Identity = 112/300 (37.33%), Postives = 169/300 (56.33%), Query Frame = 0


Query: 35  GALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSP 94
           G    RFLAIKQEG+V+EY  +F+ LS PL P ++EE+LE  F NGLDP +R EV     
Sbjct: 33  GTACARFLAIKQEGSVSEYLQKFEELSAPL-PEMAEEVLEGTFTNGLDPRIRKEVFAMRV 92

Query: 95  NGLDEMIRKALFVVEKYRVLQ---------KISQESNGG--------------TLGETIA 154
            GL++++  A    EK  V +         K + ++N G              TL + + 
Sbjct: 93  VGLEDLMEAAQLAEEKAEVTKGGPYPYPYSKEAAKTNLGSSPKTFGSPPTKMVTLAKKVV 152

Query: 155 PRTDPDSTYQTLSV---------------TEYLSKKERGLCFRCDEKLIVGHKCRNRELR 214
            +T   +T Q+ +V               ++  ++KE+GLC+RCD+    GH+C+NREL+
Sbjct: 153 NQTSNSNTSQSHTVGGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELK 212

Query: 215 VFLVQDEE-DEELP--NNDTKPTETG--------DDVGRTAPGRMMFRVEIEDSEVVVLI 274
           + +V D+  D E+   +ND    E G          VG TAPG    + ++ED EVVV+I
Sbjct: 213 LCVVADDLIDTEMSEEDNDGGMVEIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMI 272

Query: 275 GSGSTHNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
             G+THNF+S RL+E++Q+  ++T  Y V++ +G  V+GKG+   VV+ LPGLTV+EDF+
Sbjct: 273 DCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTGVVVGLPGLTVVEDFL 331

[Close]

BLAST of MC09g_new0034 vs. NCBI nr
Match: RVW39682.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 184 bits (467), Expect = 4.21e-49
Identity = 111/295 (37.63%), Postives = 172/295 (58.31%), Query Frame = 0


Query: 32  SEEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRC 91
           ++EG+L E+FLA +Q+GTVA YR  F+IL TPL  GISEE++E+ FMNGL P +RAE+R 
Sbjct: 80  TQEGSLCEQFLAARQQGTVAAYRREFEILVTPL-KGISEEVMESTFMNGLLPEIRAELRL 139

Query: 92  FSPNGLDEMIRKALFVVEKYRVLQKISQESNG--GTLGETIAPRTDPDS-----TYQTLS 151
             P GL  ++  A  V ++  +  ++++E NG  G     +    + D       +QT +
Sbjct: 140 LQPYGLGHLMEMAQRVEDR-NLAMRVAREPNGPNGPRSTKMLSSANRDEWKIGENFQTKA 199

Query: 152 V--------------------TEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEE 211
           V                    +E  +++E+GLCF+C+EK   GH+C+ +ELRV LV ++E
Sbjct: 200 VAVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCK-KELRVLLVHEDE 259

Query: 212 DEELPNNDTKPTET--------------GDDVGRTAPGRMMFRVEIEDSEVVVLIGSGST 271
           +E+    D + TE                  VG T  G M  +  I   EV++L+ SG+T
Sbjct: 260 EEDDNRFDDRATEEPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGTT 319

Query: 272 HNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           HNF+S  L+++L LPL+ T +Y V++ TG +V+GKGI + V +++ GLTV+EDF+
Sbjct: 320 HNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFL 371

[Close]

BLAST of MC09g_new0034 vs. NCBI nr
Match: XP_022131713.1 (uncharacterized protein LOC111004816 [Momordica charantia])

HSP 1 Score: 172 bits (436), Expect = 1.26e-47
Identity = 108/291 (37.11%), Postives = 164/291 (56.36%), Query Frame = 0


Query: 42  LAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSPNGLDEMI 101
           +AIKQEG+V EY+  F+ LS    P + EE+LE+ ++NGL+P+LRAEV    P GLD+++
Sbjct: 1   MAIKQEGSVEEYQEAFEALSATQ-PHLVEEVLESDYLNGLNPILRAEVLASKPTGLDQIM 60

Query: 102 RKALFVVEKYRVLQK---ISQE--SNGGTLGETIA------------------------- 161
           R+A  + ++    Q+   ++QE  S GG  G  +A                         
Sbjct: 61  RRAQLIEDQATTSQENGEVNQERPSKGGMGGVKLAIKTPETTATRSVTLASKPGTAVTAP 120

Query: 162 ---PRTDPDSTYQTLSVTEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEE---- 221
              P    ++ Y+ L+  EY  + E GLCFRC++K  VGH+CRN++LRVF+V DEE    
Sbjct: 121 AVVPTVKKETAYKRLTEEEYRKRWENGLCFRCEKKYSVGHRCRNQQLRVFMVHDEELTMT 180

Query: 222 DEELPNNDTKPTETGDD----------VGRTAPGRMMFRVEIEDSEVVVLIGSGSTHNFV 281
           +EE    D +  ET D+          VG T  G +  +  ++   VVVL+  G+ HNF+
Sbjct: 181 EEE---EDHEEGETLDEKGKAVVLNTVVGLTTLGMIKIKGILQGQGVVVLLDCGAAHNFI 240

Query: 282 SQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           S RL+++ ++P S+T NY ++  T   V+GKGI   VV+ L G+TV+EDF+
Sbjct: 241 SNRLVKEFKIPQSETYNYGIIAGTRPAVKGKGICCGVVMELLGVTVVEDFL 287

[Close]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL
Match: A0A5D3C895 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00130 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 2.15e-52
Identity = 108/279 (38.71%), Postives = 164/279 (58.78%), Query Frame = 0


Query: 33  EEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCF 92
           E   +  +FLA+KQEG+V+EY  RF+ LS PL P I+EE+LE  F NGLDP++R EV   
Sbjct: 216 EHRTVCAKFLAVKQEGSVSEYLQRFEELSVPL-PEIAEEVLEGTFTNGLDPIIRKEVFSM 275

Query: 93  SPNGLDEMIRKALFVVEKYRVLQKISQESNGGTLGETIAPRTDPDSTYQTLSV------- 152
              GL++MI  A    EK       S  +   TL E + P     +T Q  +V       
Sbjct: 276 RAVGLEDMIEAAELAEEKIEE----SPTTKMVTLAEKVLPHPSNSNTVQAKAVGGGGRRE 335

Query: 153 --------TEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEEDE------ELPNN 212
                   +E  ++KE+GLC+RCDE    GH+C+N++L +F+V D+ D+      E+   
Sbjct: 336 HPYRRWTDSELQARKEKGLCYRCDEPFSKGHRCKNKKLHLFVVADDLDDAEMGEMEIEEG 395

Query: 213 DTKPTETGD-----DVGRTAPGRMMFRVEIEDSEVVVLIGSGSTHNFVSQRLMEKLQLPL 272
             + +   D      VG TAPG    + ++E+ EVVV+I  G+THNF+S +L+E+L++P 
Sbjct: 396 MVEVSPIVDLSLNSVVGLTAPGTFKIKGKVEEREVVVMIDCGATHNFISLKLVEELKVPT 455

Query: 273 SDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           ++T NY V++ +G  V+GKG+   V++ LPGLTV++DF+
Sbjct: 456 TETTNYGVIMGSGKAVQGKGMCTGVIVGLPGLTVVDDFL 489

[Close]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL
Match: A0A438E000 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069772 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.38e-49
Identity = 107/294 (36.39%), Postives = 171/294 (58.16%), Query Frame = 0


Query: 32  SEEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRC 91
           ++EG+L E+FLA++Q+GT+  YR  F+IL+TPL  GISEE++E+ FMNGL P +RAE+R 
Sbjct: 128 TQEGSLCEQFLAVRQQGTMVAYRREFEILATPL-KGISEEVMESTFMNGLLPEIRAELRL 187

Query: 92  FSPNGLDEMIRKALFVVEKYRVLQ--------------KISQESNGGT--LGETIAPRTD 151
             P GL  ++  A  V ++   ++              K+   +N G   +GE    R  
Sbjct: 188 LKPYGLGHLMEMAQRVEDRNLAMRAACEPNGPNGPKSTKMLSSANRGEWKIGENFQTRAV 247

Query: 152 P----------DSTYQTLSVTEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEED 211
                      +   + L+ +E  +++E+GLCF+C+EK   GH+C+ +EL+V LV ++E+
Sbjct: 248 AVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCK-KELQVLLVHEDEE 307

Query: 212 EELPNNDTKPTET--------------GDDVGRTAPGRMMFRVEIEDSEVVVLIGSGSTH 271
           E+    D + TE                  V  T PG M  +  I   EV++L+ SG+TH
Sbjct: 308 EDDNQFDDRATEEPALIKLKDAVELSLNSVVDLTTPGTMKIKGMIGSKEVIILVDSGATH 367

Query: 272 NFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           NF+S  L+++L LPL+ T +Y V++ TG +V+GKGI + V +++ GLTV+EDF+
Sbjct: 368 NFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFL 419

[Close]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL
Match: A0A5D3BID7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001520 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.98e-49
Identity = 112/300 (37.33%), Postives = 169/300 (56.33%), Query Frame = 0


Query: 35  GALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSP 94
           G    RFLAIKQEG+V+EY  +F+ LS PL P ++EE+LE  F NGLDP +R EV     
Sbjct: 33  GTACARFLAIKQEGSVSEYLQKFEELSAPL-PEMAEEVLEGTFTNGLDPRIRKEVFAMRV 92

Query: 95  NGLDEMIRKALFVVEKYRVLQ---------KISQESNGG--------------TLGETIA 154
            GL++++  A    EK  V +         K + ++N G              TL + + 
Sbjct: 93  VGLEDLMEAAQLAEEKAEVTKGGPYPYPYSKEAAKTNLGSSPKTFGSPPTKMVTLAKKVV 152

Query: 155 PRTDPDSTYQTLSV---------------TEYLSKKERGLCFRCDEKLIVGHKCRNRELR 214
            +T   +T Q+ +V               ++  ++KE+GLC+RCD+    GH+C+NREL+
Sbjct: 153 NQTSNSNTSQSHTVGGGGRREPSYRRWIDSKLQARKEKGLCYRCDKPFSKGHRCKNRELK 212

Query: 215 VFLVQDEE-DEELP--NNDTKPTETG--------DDVGRTAPGRMMFRVEIEDSEVVVLI 274
           + +V D+  D E+   +ND    E G          VG TAPG    + ++ED EVVV+I
Sbjct: 213 LCVVADDLIDTEMSEEDNDGGMVEIGPIVELSLSSVVGLTAPGTSKIKGKVEDREVVVMI 272

Query: 275 GSGSTHNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
             G+THNF+S RL+E++Q+  ++T  Y V++ +G  V+GKG+   VV+ LPGLTV+EDF+
Sbjct: 273 DCGATHNFISLRLVEEMQIATTETTQYGVIMGSGKAVQGKGMCTGVVVGLPGLTVVEDFL 331

[Close]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL
Match: A0A438DW91 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_580 PE=4 SV=1)

HSP 1 Score: 184 bits (467), Expect = 2.04e-49
Identity = 111/295 (37.63%), Postives = 172/295 (58.31%), Query Frame = 0


Query: 32  SEEGALWERFLAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRC 91
           ++EG+L E+FLA +Q+GTVA YR  F+IL TPL  GISEE++E+ FMNGL P +RAE+R 
Sbjct: 80  TQEGSLCEQFLAARQQGTVAAYRREFEILVTPL-KGISEEVMESTFMNGLLPEIRAELRL 139

Query: 92  FSPNGLDEMIRKALFVVEKYRVLQKISQESNG--GTLGETIAPRTDPDS-----TYQTLS 151
             P GL  ++  A  V ++  +  ++++E NG  G     +    + D       +QT +
Sbjct: 140 LQPYGLGHLMEMAQRVEDR-NLAMRVAREPNGPNGPRSTKMLSSANRDEWKIGENFQTKA 199

Query: 152 V--------------------TEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEE 211
           V                    +E  +++E+GLCF+C+EK   GH+C+ +ELRV LV ++E
Sbjct: 200 VAVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRCK-KELRVLLVHEDE 259

Query: 212 DEELPNNDTKPTET--------------GDDVGRTAPGRMMFRVEIEDSEVVVLIGSGST 271
           +E+    D + TE                  VG T  G M  +  I   EV++L+ SG+T
Sbjct: 260 EEDDNRFDDRATEEPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGTT 319

Query: 272 HNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           HNF+S  L+++L LPL+ T +Y V++ TG +V+GKGI + V +++ GLTV+EDF+
Sbjct: 320 HNFLSLELVQQLALPLTTTTSYGVMMGTGISVKGKGICRGVCISMQGLTVVEDFL 371

[Close]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL
Match: A0A6J1BU87 (uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004816 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 6.08e-48
Identity = 108/291 (37.11%), Postives = 164/291 (56.36%), Query Frame = 0


Query: 42  LAIKQEGTVAEYRTRFKILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSPNGLDEMI 101
           +AIKQEG+V EY+  F+ LS    P + EE+LE+ ++NGL+P+LRAEV    P GLD+++
Sbjct: 1   MAIKQEGSVEEYQEAFEALSATQ-PHLVEEVLESDYLNGLNPILRAEVLASKPTGLDQIM 60

Query: 102 RKALFVVEKYRVLQK---ISQE--SNGGTLGETIA------------------------- 161
           R+A  + ++    Q+   ++QE  S GG  G  +A                         
Sbjct: 61  RRAQLIEDQATTSQENGEVNQERPSKGGMGGVKLAIKTPETTATRSVTLASKPGTAVTAP 120

Query: 162 ---PRTDPDSTYQTLSVTEYLSKKERGLCFRCDEKLIVGHKCRNRELRVFLVQDEE---- 221
              P    ++ Y+ L+  EY  + E GLCFRC++K  VGH+CRN++LRVF+V DEE    
Sbjct: 121 AVVPTVKKETAYKRLTEEEYRKRWENGLCFRCEKKYSVGHRCRNQQLRVFMVHDEELTMT 180

Query: 222 DEELPNNDTKPTETGDD----------VGRTAPGRMMFRVEIEDSEVVVLIGSGSTHNFV 281
           +EE    D +  ET D+          VG T  G +  +  ++   VVVL+  G+ HNF+
Sbjct: 181 EEE---EDHEEGETLDEKGKAVVLNTVVGLTTLGMIKIKGILQGQGVVVLLDCGAAHNFI 240

Query: 282 SQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNLPGLTVIEDFI 285
           S RL+++ ++P S+T NY ++  T   V+GKGI   VV+ L G+TV+EDF+
Sbjct: 241 SNRLVKEFKIPQSETYNYGIIAGTRPAVKGKGICCGVVMELLGVTVVEDFL 287

[Close]

BLAST of MC09g_new0034 vs. TAIR 10
Match: AT3G42723.1 (aminoacyl-tRNA ligases;ATP binding;nucleotide binding )

HSP 1 Score: 52.8 bits (125), Expect = 5.5e-07
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 41  FLAIKQEGTVAEYRTRFK--ILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSPNGLD 100
           +  I+QEG+V EYR RF+   L + +LPG   + LEA+F+ GL P L+  VR   PNG+ 
Sbjct: 343 YSGIQQEGSVREYRERFEALCLGSVILPG---QGLEALFLQGLQPSLQTAVRELKPNGIV 402

Query: 101 EMIRKALFVVE 110
           +M+  A ++ E
Sbjct: 403 QMMDTAQWLEE 410

[Close]

BLAST of MC09g_new0034 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06
Identity = 63/252 (25.00%), Postives = 99/252 (39.29%), Query Frame = 0


Query: 41  FLAIKQEGTVAEYRTRFK--ILSTPLLPGISEELLEAVFMNGLDPLLRAEVRCFSPNGLD 100
           +  I+QEG+V +YR RF+   L +  LPG   +  E +F+ GL P L+  VR   PNG++
Sbjct: 9   YSGIQQEGSVRDYRERFEALCLRSVTLPG---QGFEEMFLQGLQPSLQTAVRELKPNGIN 68

Query: 101 EMIRKALFVVEKYRVLQKISQESNGGTLGETIAPRTDPDSTYQTLSVTEYLSKKERGLCF 160
               +   ++    V  K+                               + KK++G+  
Sbjct: 69  SYQSRQAELMSLTLVQAKLD------------------------------VVKKKKGVI- 128

Query: 161 RCDEKLIVGHKCRNRELRVFLVQDEEDEELPNNDTKPTETGDD---VGRTAPGRMMFRVE 220
                                    E EEL   D+     G +   +  T    M F   
Sbjct: 129 ------------------------NELEEL-EQDSYTLRQGMEQLVIDLTRNKGMRFYGF 188

Query: 221 IEDSEVVVLIGSGSTHNFVSQRLMEKLQLPLSDTPNYSVVLPTGATVEGKGIFKAVVLNL 280
           I D +VVV I SG+T NF+   L   L+LP S T   SV+L     ++  G    + L +
Sbjct: 189 ILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLGQRQCIQSVGTCLGIRLWV 201

Query: 281 PGLTVIEDFIYL 288
             + + E+F+ L
Sbjct: 249 QEVEITENFLLL 201

The following BLAST results are available for this feature:

BLAST of MC09g_new0034 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0034 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037088.1	4.45e-52	38.71	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06556.1 ty3-gyp...	[more]
RVW41094.1	2.85e-49	36.39	hypothetical protein CK203_069772 [Vitis vinifera]	[more]
KAA0045702.1	4.09e-49	37.33	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ99580.1 ty3-gyp...	[more]
RVW39682.1	4.21e-49	37.63	Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]	[more]
XP_022131713.1	1.26e-47	37.11	uncharacterized protein LOC111004816 [Momordica charantia]	[more]

BLAST of MC09g_new0034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C895	2.15e-52	38.71	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A438E000	1.38e-49	36.39	Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_069...	[more]
A0A5D3BID7	1.98e-49	37.33	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A438DW91	2.04e-49	37.63	Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976...	[more]
A0A6J1BU87	6.08e-48	37.11	uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of MC09g_new0034 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42723.1	5.5e-07	42.25	aminoacyl-tRNA ligases;ATP binding;nucleotide binding	[more]
AT3G29750.1	1.6e-06	25.00	Eukaryotic aspartyl protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 195..288 e-value: 1.7E-7 score: 33.0
None	No IPR available	PFAM	PF08284	RVP_2	coord: 216..287 e-value: 3.5E-5 score: 23.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..204
None	No IPR available	PANTHER	PTHR34482:SF28	OS02G0566300 PROTEIN	coord: 40..278
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 40..278
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 212..285 e-value: 1.76515E-9 score: 51.9536

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0034.1	MC09g_new0034.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process