MC08g2494 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2494
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L20, chloroplastic
Location	MC08: 33751080 .. 33751247 (-)
RNA-Seq Expression	MC08g2494
Synteny	MC08g2494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGTAATTCGATATAATAAGGTATACTACAGTTATAGTAGATTCATACACAATATGTACAAGGGTCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCN

mRNA sequence

GCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGTAATTCGATATAATAAGGTATACTACAGTTATAGTAGATTCATACACAATATGTACAAGGGTCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCN

Coding sequence (CDS)

GCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACATTTGTGGATCGCTCGAATAAATGCAGTAATTCGATATAATAAGGTATACTACAGTTATAGTAGATTCATACACAATATGTACAAGGGTCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCN

Protein sequence

AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQIX

Homology

[Close]

BLAST of MC08g2494 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-20
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           AYRDRGRQKRNFR LWIARINAVIR N V YSYSRFIHN+YK QLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRQLWIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-18
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           A+RDRGRQKRNFR LWI RINAVIR NKV YSYSR IH++YK QLLLNRKILAQI
Sbjct: 46  AHRDRGRQKRNFRRLWITRINAVIRENKVSYSYSRLIHDLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-17
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           A++DRGRQKR+FR LWI RINAVIR NKVYYSYS  IH++YK QLLLNRKILAQI
Sbjct: 46  AHQDRGRQKRDFRRLWITRINAVIRANKVYYSYSTLIHHLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy Swiss-Prot
Match: A6MM59 (50S ribosomal protein L20, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-17
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           A+RDRG+QKR FR LWI RINAVIR N+V+YSYSR IH++YK QLLLNRKILAQI
Sbjct: 46  AHRDRGKQKRYFRRLWITRINAVIRDNRVFYSYSRLIHDLYKKQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy Swiss-Prot
Match: A9L9B9 (50S ribosomal protein L20, chloroplastic OS=Lemna minor OX=4472 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.5e-17
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           AYRDRGRQKR+FR LWI RINAV R N+V YSY R IHN+YK QLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRDFRRLWITRINAVTRENEVSYSYIRLIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. NCBI nr
Match: YP_009456084.1 (ribosomal protein L20 [Momordica charantia] >AUJ21851.1 ribosomal protein L20 [Momordica charantia])

HSP 1 Score: 113 bits (283), Expect = 7.77e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. NCBI nr
Match: YP_009752943.1 (ribosomal protein L20 [Momordica sessilifolia] >QIT06015.1 ribosomal protein L20 [Momordica sessilifolia])

HSP 1 Score: 112 bits (280), Expect = 2.23e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YKGQLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKGQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. NCBI nr
Match: YP_009674414.1 (ribosomal protein L20 [Siraitia grosvenorii] >YP_009738224.1 ribosomal protein L20 [Siraitia siamensis] >QDK59412.1 ribosomal protein L20 [Siraitia grosvenorii] >QDK99969.1 ribosomal protein L20 [Siraitia grosvenorii] >QIB71528.1 ribosomal protein L20 [Siraitia grosvenorii] >QIB71616.1 ribosomal protein L20 [Siraitia siamensis] >QJA16166.1 ribosomal protein L20 [Siraitia grosvenorii])

HSP 1 Score: 109 bits (272), Expect = 3.68e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. NCBI nr
Match: YP_009752689.1 (ribosomal protein L20 [Ampelosycios humblotii] >QIT05170.1 ribosomal protein L20 [Ampelosycios humblotii])

HSP 1 Score: 108 bits (270), Expect = 7.41e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QL+LNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLILNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. NCBI nr
Match: QJS52361.1 (ribosomal protein L20 [Indofevillea khasiana])

HSP 1 Score: 108 bits (269), Expect = 1.05e-28
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           +YRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Sbjct: 46  SYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy TrEMBL
Match: A0A2I6C027 (50S ribosomal protein L20, chloroplastic OS=Momordica charantia OX=3673 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 113 bits (283), Expect = 3.76e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy TrEMBL
Match: A0A6H0EW12 (50S ribosomal protein L20, chloroplastic OS=Momordica sessilifolia OX=703387 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.08e-30
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YKGQLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKGQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy TrEMBL
Match: A0A514YKV6 (50S ribosomal protein L20, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.78e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy TrEMBL
Match: A0A6C0U950 (50S ribosomal protein L20, chloroplastic OS=Siraitia siamensis OX=2695833 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.78e-29
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QLLLNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. ExPASy TrEMBL
Match: A0A6H0ET10 (50S ribosomal protein L20, chloroplastic OS=Ampelosycios humblotii OX=386639 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 108 bits (270), Expect = 3.59e-29
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 55
           AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHN+YK QL+LNRKILAQI
Sbjct: 46  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNLYKRQLILNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-16
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
           A+RDRG++KR+FR LWI RINAVI    V+YSY+ FIHN+YK QLLLNRKILAQI
Sbjct: 46  AHRDRGKRKRDFRRLWITRINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQI 100

[Close]

BLAST of MC08g2494 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 50.1 bits (118), Expect = 6.9e-07
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 1  AYRDRGRQKRNFRHLWIARINAVIRYNKVYYSYSRFIHNMYKGQLLLNRKILAQI 56
          +YRDR  +KR  R LWI RINA  R + V  +Y  FIH + K  + LNRK+L+++
Sbjct: 35 SYRDRRNKKREMRGLWIERINAGSRQHGV--NYGNFIHGLMKENIQLNRKVLSEL 87

The following BLAST results are available for this feature:

BLAST of MC08g2494 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZJ4	9.1e-20	89.09	50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=...	[more]
Q09G23	3.8e-18	83.64	50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl...	[more]
Q09WZ4	1.9e-17	80.00	50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3...	[more]
A6MM59	5.5e-17	78.18	50S ribosomal protein L20, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl20...	[more]
A9L9B9	5.5e-17	80.00	50S ribosomal protein L20, chloroplastic OS=Lemna minor OX=4472 GN=rpl20 PE=3 SV...	[more]

BLAST of MC08g2494 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009456084.1	7.77e-31	100.00	ribosomal protein L20 [Momordica charantia] >AUJ21851.1 ribosomal protein L20 [M...	[more]
YP_009752943.1	2.23e-30	98.18	ribosomal protein L20 [Momordica sessilifolia] >QIT06015.1 ribosomal protein L20...	[more]
YP_009674414.1	3.68e-29	96.36	ribosomal protein L20 [Siraitia grosvenorii] >YP_009738224.1 ribosomal protein L...	[more]
YP_009752689.1	7.41e-29	94.55	ribosomal protein L20 [Ampelosycios humblotii] >QIT05170.1 ribosomal protein L20...	[more]
QJS52361.1	1.05e-28	94.55	ribosomal protein L20 [Indofevillea khasiana]	[more]

BLAST of MC08g2494 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I6C027	3.76e-31	100.00	50S ribosomal protein L20, chloroplastic OS=Momordica charantia OX=3673 GN=rpl20...	[more]
A0A6H0EW12	1.08e-30	98.18	50S ribosomal protein L20, chloroplastic OS=Momordica sessilifolia OX=703387 GN=...	[more]
A0A514YKV6	1.78e-29	96.36	50S ribosomal protein L20, chloroplastic OS=Siraitia grosvenorii OX=190515 GN=rp...	[more]
A0A6C0U950	1.78e-29	96.36	50S ribosomal protein L20, chloroplastic OS=Siraitia siamensis OX=2695833 GN=rpl...	[more]
A0A6H0ET10	3.59e-29	94.55	50S ribosomal protein L20, chloroplastic OS=Ampelosycios humblotii OX=386639 GN=...	[more]

BLAST of MC08g2494 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00660.1	1.6e-16	72.73	ribosomal protein L20	[more]
AT1G16740.1	6.9e-07	47.27	Ribosomal protein L20	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005813	Ribosomal protein L20	PFAM	PF00453	Ribosomal_L20	coord: 1..55 e-value: 1.0E-17 score: 64.2
IPR005813	Ribosomal protein L20	PANTHER	PTHR10986	39S RIBOSOMAL PROTEIN L20	coord: 1..55
IPR005813	Ribosomal protein L20	PROSITE	PS00937	RIBOSOMAL_L20	coord: 9..25
IPR035566	Ribosomal protein L20, C-terminal	GENE3D	1.10.1900.20	Ribosomal protein L20	coord: 10..55 e-value: 2.8E-16 score: 60.9
IPR035566	Ribosomal protein L20, C-terminal	SUPERFAMILY	74731	Ribosomal protein L20	coord: 1..55
None	No IPR available	PANTHER	PTHR10986:SF12	39S RIBOSOMAL PROTEIN L20, MITOCHONDRIAL	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2494.1	MC08g2494.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome