MC08g2468 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g2468
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 33462395 .. 33462688 (+)
RNA-Seq ExpressionMC08g2468
SyntenyMC08g2468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGCTGTTCGGAAGAAGCAAGGAGCGCCAATTAAGTTCTTGGTTCCTCTCGTATATGCCCCTGTTCTTCCTCTCAGTAAGTATTTTTTTCTTATAGGTTTCTTTTTTTTTTTCTCTTTTTTGGAGCCTTTGTGATTATTTTCCATCTGGGGTTTCGTTGGAACGAGATTCTAAATTTGTGCCATTGATTTTTCAGTCAGAATCGCGCTGCGTAAGAACCCGGTTGTGAGGGATCGGCTGTTCACGGCGGTGTTGGCCGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCT

mRNA sequence

GAGGCTGTTCGGAAGAAGCAAGGAGCGCCAATTAAGTTCTTGGTTCCTCTCGTATATGCCCCTGTTCTTCCTCTCATCAGAATCGCGCTGCGTAAGAACCCGGTTGTGAGGGATCGGCTGTTCACGGCGGTGTTGGCCGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCT

Coding sequence (CDS)

GAGGCTGTTCGGAAGAAGCAAGGAGCGCCAATTAAGTTCTTGGTTCCTCTCGTATATGCCCCTGTTCTTCCTCTCATCAGAATCGCGCTGCGTAAGAACCCGGTTGTGAGGGATCGGCTGTTCACGGCGGTGTTGGCCGGTGCTTTTGCCCATGGCTTTTACCTGGTGTATCCT

Protein sequence

EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP
Homology
BLAST of MC08g2468 vs. NCBI nr
Match: XP_022143221.1 (uncharacterized protein LOC111013138 [Momordica charantia])

HSP 1 Score: 106 bits (265), Expect = 1.41e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV
Sbjct: 11 EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 66

BLAST of MC08g2468 vs. NCBI nr
Match: XP_038891090.1 (uncharacterized protein LOC120080491 isoform X1 [Benincasa hispida])

HSP 1 Score: 101 bits (251), Expect = 2.76e-26
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVY 57
          EAV +KQ AP KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVY
Sbjct: 11 EAVPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVY 67

BLAST of MC08g2468 vs. NCBI nr
Match: KAG7021264.1 (hypothetical protein SDJN02_17952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101 bits (252), Expect = 6.04e-26
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1   EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP 58
           EA  KK+ AP KFLVPL+YAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP
Sbjct: 53  EAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP 110

BLAST of MC08g2468 vs. NCBI nr
Match: KAF9839951.1 (hypothetical protein H0E87_007782 [Populus deltoides] >KAG6754664.1 hypothetical protein POTOM_040458 [Populus tomentosa] >KAG6755838.1 hypothetical protein POTOM_039245 [Populus tomentosa])

HSP 1 Score: 99.8 bits (247), Expect = 1.13e-25
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 4  RKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP 58
          RKK G PIKFLVPLVYAPVLPLIR+ LRKNPVVRDRLFTAVL GAFAHGFYLVYP
Sbjct: 18 RKKNGPPIKFLVPLVYAPVLPLIRLTLRKNPVVRDRLFTAVLVGAFAHGFYLVYP 72

BLAST of MC08g2468 vs. NCBI nr
Match: XP_038891092.1 (uncharacterized protein LOC120080491 isoform X3 [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 1.54e-25
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          EAV +KQ AP KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV
Sbjct: 11 EAVPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 66

BLAST of MC08g2468 vs. ExPASy TrEMBL
Match: A0A6J1CPL9 (uncharacterized protein LOC111013138 OS=Momordica charantia OX=3673 GN=LOC111013138 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 6.80e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV
Sbjct: 11 EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 66

BLAST of MC08g2468 vs. ExPASy TrEMBL
Match: A0A6J1KDE7 (uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.09e-25
Identity = 52/56 (92.86%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          E V KK+ APIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV
Sbjct: 11 EGVPKKRSAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 66

BLAST of MC08g2468 vs. ExPASy TrEMBL
Match: A0A6J1G3Q4 (uncharacterized protein LOC111450499 OS=Cucurbita moschata OX=3662 GN=LOC111450499 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.12e-25
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          EAV K++ APIKFLVPL+YAPVLPLIRIALRKNPV+RDRLFTAVLAGAFAHGFYLV
Sbjct: 11 EAVPKRRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLAGAFAHGFYLV 66

BLAST of MC08g2468 vs. ExPASy TrEMBL
Match: A0A5C7HWX9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012677 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.79e-25
Identity = 47/55 (85.45%), Postives = 54/55 (98.18%), Query Frame = 0

Query: 4  RKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLVYP 58
          ++K+G PIKFLVPL+YAPVLPLIR++LR+NPVVRDRLFTAVLAGAFAHGFYLVYP
Sbjct: 16 KQKRGFPIKFLVPLIYAPVLPLIRLSLRRNPVVRDRLFTAVLAGAFAHGFYLVYP 70

BLAST of MC08g2468 vs. ExPASy TrEMBL
Match: A0A1S3C7Y6 (uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.56e-25
Identity = 51/56 (91.07%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  EAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 56
          EA  +KQ AP KFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV
Sbjct: 12 EAFPRKQSAPFKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 67

BLAST of MC08g2468 vs. TAIR 10
Match: AT1G68680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-18
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 4  RKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLAGAFAHGFYLV 57
          RKK+GAPIKFLVPL+YAP LPLIR++LR  PV+RDRLF  VL GAFAHGFYLV
Sbjct: 14 RKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGAFAHGFYLV 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022143221.11.41e-28100.00uncharacterized protein LOC111013138 [Momordica charantia][more]
XP_038891090.12.76e-2692.98uncharacterized protein LOC120080491 isoform X1 [Benincasa hispida][more]
KAG7021264.16.04e-2689.66hypothetical protein SDJN02_17952, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF9839951.11.13e-2590.91hypothetical protein H0E87_007782 [Populus deltoides] >KAG6754664.1 hypothetical... [more]
XP_038891092.11.54e-2592.86uncharacterized protein LOC120080491 isoform X3 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1CPL96.80e-29100.00uncharacterized protein LOC111013138 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1KDE71.09e-2592.86uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883... [more]
A0A6J1G3Q43.12e-2589.29uncharacterized protein LOC111450499 OS=Cucurbita moschata OX=3662 GN=LOC1114504... [more]
A0A5C7HWX93.79e-2585.45Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012677 PE=4 SV=1[more]
A0A1S3C7Y64.56e-2591.07uncharacterized protein LOC103497503 OS=Cucumis melo OX=3656 GN=LOC103497503 PE=... [more]
Match NameE-valueIdentityDescription
AT1G68680.13.1e-1879.25unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37713OS05G0176600 PROTEINcoord: 3..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g2468.1MC08g2468.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane