MC08g0797 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0797
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 6513895 .. 6514032 (+)
RNA-Seq Expression	MC08g0797
Synteny	MC08g0797

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAATCTACTATTTCCAAAGGAGGTAGGTTGATCCTAGCTCAATCGGTCCTCTCAAATGCTCCCACTTATCTTCTTTGGTTTTTTAAGCTTTCTTGCTCTCCTTGCAAAAATATCAAGGAGCTCGTTAGGAATTTT

mRNA sequence

AAGAAATCTACTATTTCCAAAGGAGGTAGGTTGATCCTAGCTCAATCGGTCCTCTCAAATGCTCCCACTTATCTTCTTTGGTTTTTTAAGCTTTCTTGCTCTCCTTGCAAAAATATCAAGGAGCTCGTTAGGAATTTT

Coding sequence (CDS)

AAGAAATCTACTATTTCCAAAGGAGGTAGGTTGATCCTAGCTCAATCGGTCCTCTCAAATGCTCCCACTTATCTTCTTTGGTTTTTTAAGCTTTCTTGCTCTCCTTGCAAAAATATCAAGGAGCTCGTTAGGAATTTT

Protein sequence

KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF

Homology

[Close]

BLAST of MC08g0797 vs. NCBI nr
Match: CAB4278922.1 (unnamed protein product [Prunus armeniaca] >CAB4283381.1 unnamed protein product [Prunus armeniaca] >CAB4284207.1 unnamed protein product [Prunus armeniaca] >CAB4284211.1 unnamed protein product [Prunus armeniaca] >CAB4284213.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 47.8 bits (112), Expect = 6.33e-05
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 2  KSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
          K+ +S+GGRL L Q+VLS+ PTY L  F++  S  K +++++RNF
Sbjct: 39 KALLSQGGRLTLIQAVLSSLPTYYLSLFRIPASVAKRLEKIMRNF 83

[Close]

BLAST of MC08g0797 vs. NCBI nr
Match: TYK19487.1 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 6.64e-05
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1   KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
           KK + SKGGRL L +SVLS  P Y    FK   S CK IK+L+R+F
Sbjct: 74  KKGSFSKGGRLTLIRSVLSGIPVYYFSLFKTPNSVCKIIKKLMRDF 119

[Close]

BLAST of MC08g0797 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 48.1 bits (113), Expect = 1.25e-04
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
           K S +SKGG++ L +S L++ PTY L  FK+  S CKNI++  RNF
Sbjct: 623 KYSMLSKGGKITLIKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNF 668

[Close]

BLAST of MC08g0797 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 2.33e-04
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
           K S +SKGG++ L +S L++ PTY L  FK   S CKNI++  RNF
Sbjct: 110 KYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNF 155

[Close]

BLAST of MC08g0797 vs. NCBI nr
Match: KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 2.33e-04
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
           K S +SKGG++ L +S L++ PTY L  FK   S CKNI++  RNF
Sbjct: 447 KYSMLSKGGKITLIKSSLASLPTYQLSIFKAPVSACKNIEKTWRNF 492

[Close]

BLAST of MC08g0797 vs. ExPASy TrEMBL
Match: A0A2N9HPQ4 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42114 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.72e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1    KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
            KK  +SKGGRL L +S LS+ PTY L  FK+  S  K I++L RNF
Sbjct: 1164 KKLYLSKGGRLTLLKSTLSSLPTYFLSLFKIPVSVAKRIEQLQRNF 1209

[Close]

BLAST of MC08g0797 vs. ExPASy TrEMBL
Match: A0A2N9GBB9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24316 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.35e-05
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1    KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
            KK  +SKGGRL L +S LS+ PTY L  FK+  S  K I++L RNF
Sbjct: 1097 KKLYLSKGGRLTLLKSTLSSLPTYFLSLFKIPVSVAKRIEKLQRNF 1142

[Close]

BLAST of MC08g0797 vs. ExPASy TrEMBL
Match: A0A2N9GDT7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25176 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.35e-05
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1    KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
            K+  +SKGGRLIL +S LSN PTY L  F +  S  K I+++ RNF
Sbjct: 1266 KRMYLSKGGRLILIKSTLSNLPTYYLSLFPIPASVAKRIEKIQRNF 1311

[Close]

BLAST of MC08g0797 vs. ExPASy TrEMBL
Match: A0A6J5XET8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS30834 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.07e-05
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 2  KSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
          K+ +S+GGRL L Q+VLS+ PTY L  F++  S  K +++++RNF
Sbjct: 39 KALLSQGGRLTLIQAVLSSLPTYYLSLFRIPASVAKRLEKIMRNF 83

[Close]

BLAST of MC08g0797 vs. ExPASy TrEMBL
Match: A0A5D3D7E5 (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001420 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.22e-05
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1   KKSTISKGGRLILAQSVLSNAPTYLLWFFKLSCSPCKNIKELVRNF 46
           KK + SKGGRL L +SVLS  P Y    FK   S CK IK+L+R+F
Sbjct: 74  KKGSFSKGGRLTLIRSVLSGIPVYYFSLFKTPNSVCKIIKKLMRDF 119

The following BLAST results are available for this feature:

BLAST of MC08g0797 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g0797 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4278922.1	6.33e-05	46.67	unnamed protein product [Prunus armeniaca] >CAB4283381.1 unnamed protein product...	[more]
TYK19487.1	6.64e-05	54.35	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Cucumis...	[more]
XP_016902461.1	1.25e-04	50.00	PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]	[more]
KAA0040037.1	2.33e-04	50.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041367.1	2.33e-04	50.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC08g0797 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9HPQ4	1.72e-05	54.35	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GBB9	2.35e-05	54.35	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GDT7	2.35e-05	52.17	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25176 PE=4 SV=1	[more]
A0A6J5XET8	3.07e-05	46.67	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS30834 PE=4 S...	[more]
A0A5D3D7E5	3.22e-05	54.35	NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X1 OS=Cucum...	[more]

BLAST of MC08g0797 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0797.1	MC08g0797.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity