MC08g0716 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC08g0716
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationMC08: 5814071 .. 5814495 (-)
RNA-Seq ExpressionMC08g0716
SyntenyMC08g0716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCTTGATGACTTTACATTTACATTTACTTTGTACTGCAAGAATGGTAAAGTTGATGGGGCACGGAAGATTTTTTATGAGATGCCAGTTAAAGATATCGTTACTTGGAATGCAATCTTATCAGGGTATGTGAATGCAAGGCGTATGGACGAGCCAAAATCTTTCTTCGCAGAAATGCCAGGGAAAACCCTTCTTACTTGGACTGTGATGATTTCAGGATTAGCAAAAAATGGATTTGGGGAAGATGGTTTGAAGCTGTTTAACCAAATGAGGTTAGACGATTATTAACCCTGTGATTATGCACTTGCAGGAGCCATTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATGTCGCCAGCTCCATGCTCAGCTTGTTCATCTTGGCCACAGTTCAACACTCTCAGATGGCAATGCAATGATCTCA

mRNA sequence

CGGCTTGATGACTTTACATTTACATTTACTTTGTACTGCAAGAATGGTAAAGTTGATGGGGCACGGAAGATTTTTTATGAGATGCCAGTTAAAGATATCGTTACTTGGAATGCAATCTTATCAGGGTATGTGAATGCAAGGCGTATGGACGAGCCAAAATCTTTCTTCGCAGAAATGCCAGGGAAAACCCTTCTTACTTGGACTGTGATGATTTCAGGATTAGCAAAAAATGGATTTGGGGAAGATGGTTTGAAGCTGTTTAACCAAATGAGGTTAGACGATTATTAACCCTGTGATTATGCACTTGCAGGAGCCATTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATCGCCAGCTCCATGCTCAGCTTGTTCATCTTGGCCACAGTTCAACACTCTCAGATGGCAATGCAATGATCTCA

Coding sequence (CDS)

CGGCTTGATGACTTTACATTTACATTTACTTTGTACTGCAAGAATGGTAAAGTTGATGGGGCACGGAAGATTTTTTATGAGATGCCAGTTAAAGATATCGTTACTTGGAATGCAATCTTATCAGGGTATGTGAATGCAAGGCGTATGGACGAGCCAAAATCTTTCTTCGCAGAAATGCCAGGGAAAACCCTTCTTACTTGGACTGTGATGATTTCAGGATTAGCAAAAAATGGATTTGGGGAAGATGGTTTGAAGCTGTTTAACCAAATGAGGTTAGACGATTATTAACCCTGTGATTATGCACTTGCAGGAGCCATTACAGCTTGTTCTGTGCTTGGAGCATTGGAGAATCGCCAGCTCCATGCTCAGCTTGTTCATCTTGGCCACAGTTCAACACTCTCAGATGGCAATGCAATGATCTCA

Protein sequence

RLDDFTFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVMISGLAKNGFGEDGLKLFNQMRLDDYUPCDYALAGAITACSVLGALENRQLHAQLVHLGHSSTLSDGNAMIS
Homology
[Close]
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.9e-40
Identity = 80/147 (54.42%), Postives = 108/147 (73.47%), Query Frame = 0 

Query: 1   RLDDFTFTF-----TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSF 60
           R +DF+F F     +LY K GK D AR IF +MP KD+V+WNA+LSGYV++  + E K  
Sbjct: 314 RREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 61  FAEMPGKTLLTWTVMISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGAL 120
           F EM  K +L+W +MISGLA+NGFGE+GLKLF+ M+ + + PCDYA +GAI +C+VLGA 
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 121 EN-RQLHAQLVHLGHSSTLSDGNAMIS 142
            N +Q HAQL+ +G  S+LS GNA+I+
Sbjct: 434 CNGQQYHAQLLKIGFDSSLSAGNALIT 460

[Close]
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 5.6e-18
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 12  YCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVMI 71
           Y K GK+D A ++F EMP KD V WN +++G +  + MD  +  F     K ++TW  MI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247

Query: 72  SGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQLVHLGHS 131
           SG    G+ ++ L +F +MR     P    +   ++AC+VLG LE  ++LH  ++     
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307

Query: 132 ST 133
           S+
Sbjct: 308 SS 309

[Close]
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.6e-18
Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 0 

Query: 6   TFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLL 65
           T   ++Y +NG+++ A K+F + P +D+V++ A++ GY +   ++  +  F E+P K ++
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVV 232

Query: 66  TWTVMISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQL 125
           +W  MISG A+ G  ++ L+LF  M   +  P +  +   ++AC+  G++E  RQ+H  +
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292

Query: 126 VHLGHSSTLSDGNAMI 141
              G  S L   NA+I
Sbjct: 293 DDHGFGSNLKIVNALI 308

[Close]
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match: Q9FJY7 (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 0 

Query: 12  YCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVMI 71
           Y   G    A  +F  +P  D V+WN+++ GYV A +MD   + F +M  K  ++WT MI
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219

Query: 72  SGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQL 125
           SG  +    ++ L+LF++M+  D  P + +LA A++AC+ LGALE  + +H+ L
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYL 273

[Close]
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match: Q9MA50 (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-17
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 11  LYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVM 70
           +Y K G+   AR +F  M  K+ VTWN ++ GY+ + ++D     F +MP + L++WT M
Sbjct: 118 MYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAM 177

Query: 71  ISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGAL 116
           I+G  K G+ E+ L  F +M++    P   A+  A+ AC+ LGAL
Sbjct: 178 INGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGAL 222

[Close]
BLAST of MC08g0716 vs. NCBI nr
Match: XP_022144208.1 (pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144209.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144210.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144211.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144212.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144213.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144365.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144367.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144368.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144369.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144370.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144371.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144372.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia] >XP_022144373.1 pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia])

HSP 1 Score: 231 bits (590), Expect = 1.03e-68
Identity = 113/133 (84.96%), Postives = 120/133 (90.23%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGARKIFYEMP+KDIVTWNAILSGYVN+ RM+E KSFF EMP K LLTWTV
Sbjct: 336 TLYWKFGKVDGARKIFYEMPIKDIVTWNAILSGYVNSGRMEEAKSFFVEMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GLKLFNQMRLD Y PCDYA AGAITACSVLGALEN RQLHAQL+HLG
Sbjct: 396 MISGLAQNGFGEEGLKLFNQMRLDGYEPCDYAFAGAITACSVLGALENGRQLHAQLIHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSVGNAMIS 468

[Close]
BLAST of MC08g0716 vs. NCBI nr
Match: XP_038886633.1 (pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida])

HSP 1 Score: 227 bits (578), Expect = 5.55e-67
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGARKIFYEMPVKDIV+WNAILSGYVNA RM++ KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARKIFYEMPVKDIVSWNAILSGYVNAGRMEDAKSFFAQMPEKCLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           +ISGLA+NGFGE+ LKLFNQMRLD Y PCDYA AGAITACSVLGALEN RQLHAQ+VHLG
Sbjct: 396 IISGLAQNGFGEESLKLFNQMRLDGYEPCDYAFAGAITACSVLGALENGRQLHAQIVHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H+S+LS GNAMIS
Sbjct: 456 HNSSLSVGNAMIS 468

[Close]
BLAST of MC08g0716 vs. NCBI nr
Match: XP_023002238.1 (pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima])

HSP 1 Score: 226 bits (576), Expect = 1.08e-66
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGAR IFYEMPVKDIV+WNAILSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARNIFYEMPVKDIVSWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GL LFN+MRLD Y PCDYA AGAITACSVLG+LEN RQLHAQLVHLG
Sbjct: 396 MISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLVHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSIGNAMIS 468

[Close]
BLAST of MC08g0716 vs. NCBI nr
Match: KAG7020472.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225 bits (574), Expect = 2.09e-66
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGAR IFYEMPVKDIV+WNAILSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARHIFYEMPVKDIVSWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GL LFN+MRLD Y PCDYA AGAITACSVLG+LEN RQLHAQL+HLG
Sbjct: 396 MISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSIGNAMIS 468

[Close]
BLAST of MC08g0716 vs. NCBI nr
Match: KAG6585558.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225 bits (574), Expect = 2.09e-66
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGAR IFYEMPVKDIV+WNAILSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARHIFYEMPVKDIVSWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GL LFN+MRLD Y PCDYA AGAITACSVLG+LEN RQLHAQL+HLG
Sbjct: 396 MISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSIGNAMIS 468

[Close]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match: A0A6J1CRF6 (pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charantia OX=3673 GN=LOC111014069 PE=3 SV=1)

HSP 1 Score: 231 bits (590), Expect = 4.99e-69
Identity = 113/133 (84.96%), Postives = 120/133 (90.23%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGARKIFYEMP+KDIVTWNAILSGYVN+ RM+E KSFF EMP K LLTWTV
Sbjct: 336 TLYWKFGKVDGARKIFYEMPIKDIVTWNAILSGYVNSGRMEEAKSFFVEMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GLKLFNQMRLD Y PCDYA AGAITACSVLGALEN RQLHAQL+HLG
Sbjct: 396 MISGLAQNGFGEEGLKLFNQMRLDGYEPCDYAFAGAITACSVLGALENGRQLHAQLIHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSVGNAMIS 468

[Close]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match: A0A6J1KSZ4 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima OX=3661 GN=LOC111496149 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 5.21e-67
Identity = 111/133 (83.46%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGAR IFYEMPVKDIV+WNAILSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARNIFYEMPVKDIVSWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GL LFN+MRLD Y PCDYA AGAITACSVLG+LEN RQLHAQLVHLG
Sbjct: 396 MISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLVHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSIGNAMIS 468

[Close]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match: A0A6J1GGL5 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata OX=3662 GN=LOC111454019 PE=3 SV=1)

HSP 1 Score: 225 bits (574), Expect = 1.01e-66
Identity = 110/133 (82.71%), Postives = 119/133 (89.47%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGAR IFYEMPVKDIV+WNAILSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARHIFYEMPVKDIVSWNAILSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE+GL LFN+MRLD Y PCDYA AGAITACSVLG+LEN RQLHAQL+HLG
Sbjct: 396 MISGLAQNGFGEEGLNLFNRMRLDGYEPCDYAFAGAITACSVLGSLENGRQLHAQLIHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H S+LS GNAMIS
Sbjct: 456 HDSSLSIGNAMIS 468

[Close]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match: A0A1S4DVG9 (pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=3656 GN=LOC103488043 PE=3 SV=1)

HSP 1 Score: 221 bits (564), Expect = 1.33e-65
Identity = 108/133 (81.20%), Postives = 117/133 (87.97%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGARKIFYEMPVKD+++WN +LSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARKIFYEMPVKDVISWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE  LKLFNQMRLD Y P DYA AGAITACSVLGALEN RQLHAQ+VHLG
Sbjct: 396 MISGLAQNGFGEQALKLFNQMRLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H STLS GNAMI+
Sbjct: 456 HDSTLSVGNAMIT 468

[Close]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match: A0A0A0LL72 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368270 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 1.43e-65
Identity = 109/133 (81.95%), Postives = 117/133 (87.97%), Query Frame = 0 

Query: 10  TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTV 69
           TLY K GKVDGARKIFYEMPVKDI+TWN +LSGYVNA RM+E KSFFA+MP K LLTWTV
Sbjct: 336 TLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTV 395

Query: 70  MISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALEN-RQLHAQLVHLG 129
           MISGLA+NGFGE  LKLFNQM+LD Y P DYA AGAITACSVLGALEN RQLHAQ+VHLG
Sbjct: 396 MISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLG 455

Query: 130 HSSTLSDGNAMIS 141
           H STLS GNAMI+
Sbjct: 456 HDSTLSVGNAMIT 468

[Close]
BLAST of MC08g0716 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 6.3e-41
Identity = 80/147 (54.42%), Postives = 108/147 (73.47%), Query Frame = 0 

Query: 1   RLDDFTFTF-----TLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSF 60
           R +DF+F F     +LY K GK D AR IF +MP KD+V+WNA+LSGYV++  + E K  
Sbjct: 314 RREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLI 373

Query: 61  FAEMPGKTLLTWTVMISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGAL 120
           F EM  K +L+W +MISGLA+NGFGE+GLKLF+ M+ + + PCDYA +GAI +C+VLGA 
Sbjct: 374 FKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAY 433

Query: 121 EN-RQLHAQLVHLGHSSTLSDGNAMIS 142
            N +Q HAQL+ +G  S+LS GNA+I+
Sbjct: 434 CNGQQYHAQLLKIGFDSSLSAGNALIT 460

[Close]
BLAST of MC08g0716 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 42/136 (30.88%), Postives = 79/136 (58.09%), Query Frame = 0 

Query: 6   TFTFTLYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLL 65
           T   ++Y +NG+++ A K+F + P +D+V++ A++ GY +   ++  +  F E+P K ++
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVV 232

Query: 66  TWTVMISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQL 125
           +W  MISG A+ G  ++ L+LF  M   +  P +  +   ++AC+  G++E  RQ+H  +
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292

Query: 126 VHLGHSSTLSDGNAMI 141
              G  S L   NA+I
Sbjct: 293 DDHGFGSNLKIVNALI 308

[Close]
BLAST of MC08g0716 vs. TAIR 10
Match: AT5G15300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-19
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 12  YCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVMI 71
           Y K GK+D A ++F EMP KD V WN +++G +  + MD  +  F     K ++TW  MI
Sbjct: 188 YAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMI 247

Query: 72  SGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQLVHLGHS 131
           SG    G+ ++ L +F +MR     P    +   ++AC+VLG LE  ++LH  ++     
Sbjct: 248 SGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASV 307

Query: 132 ST 133
           S+
Sbjct: 308 SS 309

[Close]
BLAST of MC08g0716 vs. TAIR 10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-19
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 11  LYCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVM 70
           +Y K G+   AR +F  M  K+ VTWN ++ GY+ + ++D     F +MP + L++WT M
Sbjct: 118 MYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAM 177

Query: 71  ISGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGAL 116
           I+G  K G+ E+ L  F +M++    P   A+  A+ AC+ LGAL
Sbjct: 178 INGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGAL 222

[Close]
BLAST of MC08g0716 vs. TAIR 10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-19
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 0 

Query: 12  YCKNGKVDGARKIFYEMPVKDIVTWNAILSGYVNARRMDEPKSFFAEMPGKTLLTWTVMI 71
           Y   G    A  +F  +P  D V+WN+++ GYV A +MD   + F +M  K  ++WT MI
Sbjct: 160 YAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMI 219

Query: 72  SGLAKNGFGEDGLKLFNQMRLDDYXPCDYALAGAITACSVLGALE-NRQLHAQL 125
           SG  +    ++ L+LF++M+  D  P + +LA A++AC+ LGALE  + +H+ L
Sbjct: 220 SGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYL 273

The following BLAST results are available for this feature:
BLAST of MC08g0716 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FRI58.9e-4054.42Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
Q9LXF25.6e-1834.43Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX... [more]
Q9LN015.6e-1830.88Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop... [more]
Q9FJY71.3e-1736.84Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX... [more]
Q9MA501.3e-1737.14Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop... [more]
BLAST of MC08g0716 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022144208.11.03e-6884.96pentatricopeptide repeat-containing protein At1g25360-like [Momordica charantia]... [more]
XP_038886633.15.55e-6783.46pentatricopeptide repeat-containing protein At1g25360-like [Benincasa hispida][more]
XP_023002238.11.08e-6683.46pentatricopeptide repeat-containing protein At1g25360-like [Cucurbita maxima][more]
KAG7020472.12.09e-6682.71Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6585558.12.09e-6682.71Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
BLAST of MC08g0716 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CRF64.99e-6984.96pentatricopeptide repeat-containing protein At1g25360-like OS=Momordica charanti... [more]
A0A6J1KSZ45.21e-6783.46pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita maxima O... [more]
A0A6J1GGL51.01e-6682.71pentatricopeptide repeat-containing protein At1g25360-like OS=Cucurbita moschata... [more]
A0A1S4DVG91.33e-6581.20pentatricopeptide repeat-containing protein At1g25360-like OS=Cucumis melo OX=36... [more]
A0A0A0LL721.43e-6581.95DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3682... [more]
BLAST of MC08g0716 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G25360.16.3e-4154.42Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G08070.14.0e-1930.88Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G15300.14.0e-1934.43Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G05750.18.9e-1937.14Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G66520.18.9e-1936.84Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 66..98
e-value: 3.2E-7
score: 28.1
coord: 12..33
e-value: 4.2E-4
score: 18.3
coord: 34..59
e-value: 4.3E-4
score: 18.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 66..92
e-value: 9.2E-8
score: 31.8
coord: 34..61
e-value: 3.4E-5
score: 23.8
coord: 11..32
e-value: 2.5E-4
score: 21.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 32..66
score: 9.865228
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..127
e-value: 1.5E-22
score: 81.8
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 9..139
NoneNo IPR availablePANTHERPTHR47929:SF13BNACNNG04730D PROTEINcoord: 9..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC08g0716.1MC08g0716.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding