MC08g0063 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g0063
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	MC08: 391213 .. 391966 (+)
RNA-Seq Expression	MC08g0063
Synteny	MC08g0063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCTACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTTGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATCCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCGCTGAGATCGCCATGATCGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

mRNA sequence

TGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTTGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATCCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCGCTGAGATCGCCATGATCGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

Coding sequence (CDS)

TGGCATTTCCTTGACTTGGCTTCACCTCTGTTCTTCCATCTTCTCATCTCATTACACCTAAATTTGCCAAAACCCAACCTTTCCCTCTTCATTCTGCATCTCCCCACCTGCCAAAGGCCATCAACAGAAACAAGCAAGTCAACTTCAATGGCAGCCACCATGGCTACAATGGCAGTGCTCAGTGTCAAGTGCACAAGCATCAACTCCAGCAAAAACCACACCACCCCAAAGCCTATCACCAACCCCATCTCTCTCCTCTCTCTTCAGAACCTTCCTAAAGAACTAATCTCGTCAAAAGCTAGTCAAAATCCCAACTTATCAACTTTCCTCTCCAGCACAGCCATTGCTGGAGCTGTCTTCTCAGCCTTCAGCTCATCGGATCCTGCCTTTGCAGCCCAGCAAATTGCGGAGATTGCTGCCGAAGGCGACAACCGCGGCTTAGCCCTTTTGCTACCCCTTATCCCGGCCATAGCATGGGTTTTGTTCAACATACTACAGCCAGCACTCAACCAGATCAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGCTGGCTGCATCAGAGTTTATGTACGCACCTGATGCTTCTGCCGCTGAGATCGCCATGATCGCTGATGCTTCCTCAAGTGATGCCAGGGGGCAGCTTCTGCTGTTTGTCATATCACCCGCCATTCTTTGGGTGCTGTACAACATTCTCCAGCCAGCTTTAAATCAACTCAACAGGATGAGGTCCGAG

Protein sequence

WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLPTCQRPSTETSKSTSMAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of MC08g0063 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 6.0e-47
Identity = 123/209 (58.85%), Postives = 150/209 (71.77%), Query Frame = 0


Query: 50  MAATMA-TMAVLSVKCTSINSSK-NHTTPKPITNPISLLSLQNLPKELISSKASQNPNLS 109
           MAATMA TMAVL+ KC ++N++K   T+PKP + PISL      P  L +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKLPM--GLS 60

Query: 110 TFLSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAE---GDNRGLALLLPLIPAIAWVLFNI 169
             +++ AIAGAVF+   S DPAFA QQ+A+IAAE    DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 170 LQPALNQINRMRSD-KGVIIGLGLGGLAASEFMYA-PDASAAEIAMIADASSSDARGQLL 229
           LQPALNQIN+MR++ K  I+GLGL GLA S  + A P+A AA   +   A  SD RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 230 LFVISPAILWVLYNILQPALNQLNRMRSE 252
           L V+ PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of MC08g0063 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.7e-46
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAA MAT    + KC S+N S     PK        L  Q   K  IS      PN+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPS----PPK--------LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIA---AEGDNRGLALLLPLIPAIAWVLFNILQ 169
           ++STA+AGAVFS+ S S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 170 PALNQINRMRSDKGVIIGLGL-GGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFV 229
           PA+NQ+N+MR  KG+++GLG+ GGLAAS  +  P  + A  A  A A+SSD+RGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 230 ISPAILWVLYNILQPALNQLNRMRS 251
           ++PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of MC08g0063 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 379 bits (974), Expect = 1.16e-130
Identity = 217/256 (84.77%), Postives = 229/256 (89.45%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRPS----TETSKSTSMAATMA 60
           W +L L SP   HL  SL   LPKPNLS FILH+P TCQRPS    TETSKSTSMAATMA
Sbjct: 3   WLYLSLPSP---HLX-SLQTFLPKPNLSYFILHIPPTCQRPSELSSTETSKSTSMAATMA 62

Query: 61  TMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAI 120
           TMAVLSVKCTSINS+KNH TPKPI  PISLLSLQNLPK L+SSK++QN NLST LSSTAI
Sbjct: 63  TMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTILSSTAI 122

Query: 121 AGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRM 180
           AGAVFS  SSSDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQIN+M
Sbjct: 123 AGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINKM 182

Query: 181 RSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLY 240
           RSDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLY
Sbjct: 183 RSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLY 242

Query: 241 NILQPALNQLNRMRSE 251
           NILQPALNQLNRMRSE
Sbjct: 243 NILQPALNQLNRMRSE 254

[Close]

BLAST of MC08g0063 vs. NCBI nr
Match: XP_022131700.1 (photosystem II core complex proteins psbY, chloroplastic [Momordica charantia])

HSP 1 Score: 366 bits (940), Expect = 2.77e-126
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 169
           LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 170 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 229
           NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 230 ILWVLYNILQPALNQLNRMRSE 251
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MC08g0063 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 361 bits (926), Expect = 2.27e-123
Identity = 210/255 (82.35%), Postives = 225/255 (88.24%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRP---STETSKSTSMAATMAT 60
           W +L L+SP   HL I+ ++ LPKPNL  FILHL  TCQ P   ST TSKSTSMAATMAT
Sbjct: 3   WLYLCLSSP---HL-ITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAATMAT 62

Query: 61  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 120
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIA 122

Query: 121 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 180
           GAVF+   SSDPAFAAQQIAEIAA+GDNRGLALLLPLIPA+AWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR 182

Query: 181 SDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYN 240
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 241 ILQPALNQLNRMRSE 251
           ILQPALNQLNRMRSE
Sbjct: 243 ILQPALNQLNRMRSE 253

[Close]

BLAST of MC08g0063 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 357 bits (915), Expect = 1.07e-121
Identity = 208/255 (81.57%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRP---STETSKSTSMAATMAT 60
           W +L L SP   HL I+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP---HL-ITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 61  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 120
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 121 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 180
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 181 SDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYN 240
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 241 ILQPALNQLNRMRSE 251
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MC08g0063 vs. NCBI nr
Match: KAG7029231.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 327 bits (837), Expect = 1.34e-110
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++ + NLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 169
           LSSTAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 170 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 229
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 230 ILWVLYNILQPALNQLNRMRSE 251
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MC08g0063 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 1.34e-126
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 169
           LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 170 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 229
           NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 230 ILWVLYNILQPALNQLNRMRSE 251
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of MC08g0063 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 361 bits (926), Expect = 1.10e-123
Identity = 210/255 (82.35%), Postives = 225/255 (88.24%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRP---STETSKSTSMAATMAT 60
           W +L L+SP   HL I+ ++ LPKPNL  FILHL  TCQ P   ST TSKSTSMAATMAT
Sbjct: 3   WLYLCLSSP---HL-ITPNIVLPKPNLFYFILHLSSTCQSPELSSTVTSKSTSMAATMAT 62

Query: 61  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 120
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK++QN NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSSTAIA 122

Query: 121 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 180
           GAVF+   SSDPAFAAQQIAEIAA+GDNRGLALLLPLIPA+AWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR 182

Query: 181 SDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYN 240
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 241 ILQPALNQLNRMRSE 251
           ILQPALNQLNRMRSE
Sbjct: 243 ILQPALNQLNRMRSE 253

[Close]

BLAST of MC08g0063 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 5.19e-122
Identity = 208/255 (81.57%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRP---STETSKSTSMAATMAT 60
           W +L L SP   HL I+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP---HL-ITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 61  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 120
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 121 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 180
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 181 SDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYN 240
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 241 ILQPALNQLNRMRSE 251
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MC08g0063 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 357 bits (915), Expect = 5.19e-122
Identity = 208/255 (81.57%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 1   WHFLDLASPLFFHLLISLHLNLPKPNLSLFILHLP-TCQRP---STETSKSTSMAATMAT 60
           W +L L SP   HL I+ ++ LPKPN   FILHL  TCQ P   STETSKSTSMAATMAT
Sbjct: 3   WLYLCLPSP---HL-ITPNIVLPKPNHFYFILHLSSTCQSPELSSTETSKSTSMAATMAT 62

Query: 61  MAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTFLSSTAIA 120
           MAVLSVKCTSINS+K H T K I  PISLLSLQNLPK LISSK+++N NLSTFLSSTAIA
Sbjct: 63  MAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSSTAIA 122

Query: 121 GAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 180
           GAVF+   +SDPAFAAQQIAEIAA+GDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR
Sbjct: 123 GAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMR 182

Query: 181 SDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPAILWVLYN 240
           SDKGVIIGLGLGGL AS FMYAPDASA+EIAMIADASSSD+RGQLLLFV++PAILWVLYN
Sbjct: 183 SDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWVLYN 242

Query: 241 ILQPALNQLNRMRSE 251
           ILQPALNQLNRMRS+
Sbjct: 243 ILQPALNQLNRMRSK 253

[Close]

BLAST of MC08g0063 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 279 bits (713), Expect = 4.55e-92
Identity = 156/202 (77.23%), Postives = 174/202 (86.14%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAAT+ATMA+L+ KC SINS KN    KP   PISLLS+QNLPK L + K+S+N NLST 
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 169
           L+ TAIAGA+FS  SS DPA AAQQIAEIA +GDNRGLALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEIA-DGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 170 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 229
           NQ+N+MRS KGVIIGLGLGGLAAS FM  P ASA+EIA +ADA+SSD RGQLLLFV++PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 230 ILWVLYNILQPALNQLNRMRSE 251
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of MC08g0063 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-47
Identity = 115/205 (56.10%), Postives = 144/205 (70.24%), Query Frame = 0


Query: 50  MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 109
           MAA MAT    + KC S+N S     PK        L  Q   K  IS      PN+S  
Sbjct: 1   MAAAMAT----ATKCMSLNPS----PPK--------LQNQTKSKPFISLPTPPKPNVSLA 60

Query: 110 LSSTAIAGAVFSAFSSSDPAFAAQQIAEIA---AEGDNRGLALLLPLIPAIAWVLFNILQ 169
           ++STA+AGAVFS+ S S+PA A QQIA++A   A  DNRGLALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 170 PALNQINRMRSDKGVIIGLGL-GGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFV 229
           PA+NQ+N+MR  KG+++GLG+ GGLAAS  +  P  + A  A  A A+SSD+RGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 230 ISPAILWVLYNILQPALNQLNRMRS 251
           ++PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of MC08g0063 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	6.0e-47	58.85	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	8.7e-46	56.10	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of MC08g0063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886078.1	1.16e-130	84.77	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_022131700.1	2.77e-126	100.00	photosystem II core complex proteins psbY, chloroplastic [Momordica charantia]	[more]
XP_004142959.3	2.27e-123	82.35	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
XP_008444395.1	1.07e-121	81.57	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
KAG7029231.1	1.34e-110	88.61	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of MC08g0063 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQF3	1.34e-126	100.00	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
A0A0A0LKA1	1.10e-123	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	5.19e-122	81.57	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	5.19e-122	81.57	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
F6GVJ9	4.55e-92	77.23	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of MC08g0063 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	6.2e-47	56.10	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 216..248 e-value: 7.8E-10 score: 38.5 coord: 143..175 e-value: 3.7E-14 score: 52.3
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 143..177 score: 10.933356
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 50..251
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 50..251

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g0063.1	MC08g0063.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity