MC07g_new0063 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g_new0063
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC07: 2268920 .. 2272810 (+)
RNA-Seq Expression	MC07g_new0063
Synteny	MC07g_new0063

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGAATTGTTCAAAACAATGCGTCATTCTCAACACTATTTGCCGATTCCACAAGAGATATTTGGCTTGATTTGCAAGAGCGCTTCCAAAAACAAAATCGTCCTCGGCTAGTCCAGCTTCGACGTGATATTTCTAATTTGACACAAGATCAACTTTCTGTAAGTGCATATTTCACGAAATTGAAAACTTTATGGGCTGAACTCTCTGCTTATCGCCCTAATTGTTCTTGTGGACGATGTACTTATGGAGCTATCAAATCTCTCATCGAATATTCCAGACGGACTACGTTATGTGCTTCCTTATTGGTCTTAATGATTGATTCAGCCAAATTCCTGCTCAGATGTTGTTGATGAAGCCACCTCCGACGATCAATCGGGCTTTCACTCTAGTTTCACAAGAAGTTCAACAGCGTGCTATCTCATCAATTTCTTCTCCCTTTGTGCCTTCGTCTGTACCGTCAGCTGCTTTTTTGGTTTGAGGATCTTCACAGAGTTCTAATTCCTCAAATTCTAATCAGAATCGCTCATCTTCTTCGAATCAGGGCAAACAAAAGGATAAATCTGTTTGTACTCATTGTGGTCTCTCAGGACACACCAGTGGACCGCTGTTACAAGCTCCATGATTATCCCCCTGGTTATCGCACCTCTGGTAATCGAACTAATCATCCACAGAAGACTTCTGTTAAGGCTACTGAGCCTCCATCCAAGCCTACTCCAAATGCTATTTCAGATTCTCTTTCGCATATTAGTGCTGATCAATGCCAAGGATTGTTAAATCTTCTTCAATCTCATTTGGCGAAAGTGAAAACTGAATCTGAACCAAGTACTTCACATGTTGTAGGTACATGTTTTTATGCTTTACAAAATTCTGGAATTTCTACTGATCAGTGGGTGATAGATTCTGGCGCTTCTACACACATTTGTTACTCTCGTGATTTATTTCTTGGTCTGAGATCAGTTTCTGGGGTTCATATTTCACTGCCTGATAATTCTCGAGTCAATGTTGAGTTTGTTGGTGATATACTAAAAAGTCCTTTTTGTTCCCCATTTTCGATTCGATCTGATCTCTGTTGGTGCTTTAATCAGGACTTCTTTACTAATTGTTCAATTTTCTGGTGATTCTTGTCTAATCCAGGATAAGTTTTCTTTGAAGACGATTGGCAAGGGTAACTATTGCGCGGACTTTATCTGTTCTCTACGGCCTCTGTTGTTCGCTGTTCTTCAAAGACTATGTATATGCTGTTGTTCATTTGTCTTCTGTTAATATTTGGCACAATAGACTTGGTCATCTATCTTTAAACATCTAAATGTTCTCAAAGATATTTTACATTTAGATTCATGTATAACTTCTTCTGATGACCCATGTTTGATATGTCCCTTAGCAAAACAACGTCGTTTATCTTTTACTTCAAATAACCACCTTACTGAATGTTCGTTTGATCTTGTACATTGTGATACCTGGGGTGCTATATCTATCTCCTATTCATAATGGGTATCGATATTTCCTTACTATCGTTGATGATTTCTCTCGTTTTACATGGATCTTTATGATGAGAAAGAAATCAGATGCTCTCATTATTGTGCCTCAGTTTTTTTCAGTATGTAGCAACCCAATTTGGAAAGGTTATTAAGCAATTTCGGTTGGATAACGCTCCTGAATTATCCTTTACTAAATATTTCCTTTCCAAGGGTGTCTTGTATCAATATTCTTGTGTAGAACGTCCTGAACAGAATTCGGTTGTAGAGTGAAAACATCAACACTTATTAAATGTTGCAAGATCTTTATATTTTCAGTCTCGCTTGCCTATTACTTTTTGGGGGGAGTGTGTTCTCACAGCTGCTTATTTGATTAATCAAACTCTGTCATCTATATTTGATTGGCAAACTCATTTCTCTTGTTTATATGGTAATGAAGCTGATTATAATGATTTGCGTACTTTTGGTTGTCTATGTTTCGCTTCTACAATGCTCTCTCATCGTTCTAAATTTCATCCCAGGGTTATACCTTATGTATTTGTTGGTTATCCTCTGGGAGTTAAAGGGTATCGATTATTTGATATTGAACACATAAAGTTTTTTCTTTCTCGGGATGTCGTTTTTCATGAGCAGATTTTCCCTTTTAGTTCAATATCATTGCCAACTGATTCTGTTGATCCATTCCCAGATTTTGTTTTGCCGAAAGCTTTTGATTTTGTTAGCAGTCCTTCTGGTGTATCTTCTTTGCCTCATAATGCTTCCAACTTGCATAGTCCTGCTGTGGATGTCACACCAACTAATGCATGGACTCATGATATGGCTTCTCCTATACATAATGCTACCACTGCTTATGTGGTAAATAATTCTAATTTTCCATCTTTCACTGCTGTTATTTTGCATGATGATCATGTTGTTGATGTTCCATTTGCTGCTATTGTTGAGAATTCTAATGTCCCATCTGCAGTCATTGAGAATTCTGTTGTACCATCTGCTGTTGATATTAAGACTTCTGTTGTGCCGTCTGTTGTTATGCCTGTTGATCCCTGGATTCAACAGTCAATTTCTGTTATTCCTTCAACATCTGTTCGCAGGTCACAGAGGGATTCTCGGCCCCCATCTTATCTTAAGGATTATCACTGTAATTTGCTTGCTTCTGCTGCTTTGCCCCCTTTTCAGTCTCGGTATCCTTTGCAGAAGGTTTTATCTTATGACAGATTATCGCCATCCTACAAGAATTTTATTCTGAATATATCCACTGATTTTGAGCGGCAATTCTATCATTAGGTCGTTCCATTCTCTTGTTGGCGTGACTCCATGCACAGTGAGTTACAAACCATGGAAGCCAACCACACTTGGTCTGTTGTTCCTTTGCCCTCTGGTCATCATTCCATCGGTTGTAAATGGATGTACAAAATCAAATACCATTCTGATGGTACTATTGATCGTTATAAAGCACGACTTGTTGCTCAAGGGTACACTCAACAGAAAGGCCTTGATTATATCGAGACTTTTTCACCATTTGCGAAGCTTGTTAGTGTTAAGGTTTTGCTCACAATAGTTGTATCCTTAAATTGGCCATTGGTGTAATTGGATGTCAACAACGCTTTTGTGAATGACGATCTTTTCGAGGAGGTCTATATGGATTTGCCCCTTGGATATAAGAATAAGGCTGTTGCTTCTCAGGGGGAGCGTCTTGTATGCCGGCTTCACAAGTCCATTTATGGTCTCAAACAAGCATCCCGACAGTGGTTCGATAAGTTTTCACATAGCTTGTTACAGCTGGGTTTCAAGCAAACAAAATCAGATTATTCTTTGTTTGTAAAAAGGTCGGACTCCTTTTTGACACTTTTGGTTTATGTGGACAACATAATAATCACCGGTGCTTCTTCTACTGCTAGTGATGCTTTGAAAACTCACCTTCATGCTATTTTTAAGCTGAAGGATTTGGGTTCCTTGAAGTATTTTTTGGATTGGAATTGGTTTGTTCCCGCTTTCTCTTCTCTACTGTCCAAGATGGGAGTTTCAAATATTCTACTTCCATCTTGAGGGGGAGTATTAGGATTAGTTACATAGTTATTATTTTGTAACTAAACATTCTGCAATATTGCTCTATTTTGTATGACCTATATATATACCCACTTACTTTCATTAATGTTAAGACAAATATTAAGTTACTCTTAGATGTAATACTATTATATGCAATTTCCATCACAATATTTTGTTATTTTCCGCCAGTTAATTAAAAACGGCATGACATGTTATCGAATAAATTTTTAGTTGAATTTGGTAAGAGATGACAGAATAAATAAAGACAAATGTATAAAATTCAAAAGAAAATTCAAAATTTCATTTTTTCCCCAACTCTAACTTTTTGTGTGTGACTATTCTCTCTGGCATATATCTCTCTCTCGAATTT

mRNA sequence

ATGCTTCCAACTTGCATAGTCCTGCTGTGGATGTCACACCAACTAATGCATGGACTCATGATATGGCTTCTCCTATACATAATGCTACCACTGCTTATGTGGTCACAGAGGGATTCTCGGCCCCCATCTTATCTTAAGGATTATCACTGTAATTTGCTTGCTTCTGCTGCTTTGCCCCCTTTTCAGTCTCGGTATCCTTTGCAGAAGGTCGTTCCATTCTCTTGTTGGCGTGACTCCATGCACAGTGAGTTACAAACCATGGAAGCCAACCACACTTGGTCTGTTGTTCCTTTGCCCTCTGGTCATCATTCCATCGGTTGTAAATGGATGTACAAAATCAAATACCATTCTGATGGTACTATTGATCGTTATAAAGCACGACTTGTTGCTCAAGGGTACACTCAACAGAAAGGCCTTGATTATATCGAGACTTTTTCACCATTTGCGAAGCTTGTTAGTGTTAAGGTTTTGCTCACAATAGTTGTATCCTTAAATTGGCCATTGGTGTAA

Coding sequence (CDS)

ATGCTTCCAACTTGCATAGTCCTGCTGTGGATGTCACACCAACTAATGCATGGACTCATGATATGGCTTCTCCTATACATAATGCTACCACTGCTTATGTGGTCACAGAGGGATTCTCGGCCCCCATCTTATCTTAAGGATTATCACTGTAATTTGCTTGCTTCTGCTGCTTTGCCCCCTTTTCAGTCTCGGTATCCTTTGCAGAAGGTCGTTCCATTCTCTTGTTGGCGTGACTCCATGCACAGTGAGTTACAAACCATGGAAGCCAACCACACTTGGTCTGTTGTTCCTTTGCCCTCTGGTCATCATTCCATCGGTTGTAAATGGATGTACAAAATCAAATACCATTCTGATGGTACTATTGATCGTTATAAAGCACGACTTGTTGCTCAAGGGTACACTCAACAGAAAGGCCTTGATTATATCGAGACTTTTTCACCATTTGCGAAGCTTGTTAGTGTTAAGGTTTTGCTCACAATAGTTGTATCCTTAAATTGGCCATTGGTGTAA

Protein sequence

MLPTCIVLLWMSHQLMHGLMIWLLLYIMLPLLMWSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPLV

Homology

[Close]

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 48/94 (51.06%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 76   WRDSMHSELQTMEANHTWSVVPLPSGHHSI-GCKWMYKIKYHSDGTIDRYKARLVAQGYT 135
            WR++M SE+     NHTW +VP P  H +I GC+W++  KY+SDG+++RYKARLVA+GY 
Sbjct: 968  WRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYN 1027

Query: 136  QQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPL 169
            Q+ GLDY ETFSP  K  S++++L + V  +WP+
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPI 1061

[Close]

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.6e-22
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 76   WRDSMHSELQTMEANHTWSVVPLPSGHHSI-GCKWMYKIKYHSDGTIDRYKARLVAQGYT 135
            WR +M SE+     NHTW +VP P    +I GC+W++  K++SDG+++RYKARLVA+GY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 136  QQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPL 169
            Q+ GLDY ETFSP  K  S++++L + V  +WP+
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPI 1044

[Close]

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.6e-19
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 76  WRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQ 135
           W  +M  EL  +  N TW +VP P   + +GCKW++K K HSDGT+DR KARLVA+G+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 136 QKGLDYIETFSPFAKLVSVKVLLTIV------VSLNW 167
           ++G+ ++ET+SP  +  +++ +L +        S+NW
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEVGQSINW 136

[Close]

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.3e-16
Identity = 35/87 (40.23%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 79  SMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKG 138
           +M  E+++++ N T+ +V LP G   + CKW++K+K   D  + RYKARLV +G+ Q+KG
Sbjct: 829 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 139 LDYIETFSPFAKLVSVKVLLTIVVSLN 166
           +D+ E FSP  K+ S++ +L++  SL+
Sbjct: 889 IDFDEIFSPVVKMTSIRTILSLAASLD 915

[Close]

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 34/92 (36.96%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 74  SCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGY 133
           S W +++++EL   + N+TW++   P   + +  +W++ +KY+  G   RYKARLVA+G+
Sbjct: 904 SSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGF 963

Query: 134 TQQKGLDYIETFSPFAKLVSVKVLLTIVVSLN 166
           TQ+  +DY ETF+P A++ S + +L++V+  N
Sbjct: 964 TQKYQIDYEETFAPVARISSFRFILSLVIQYN 995

[Close]

BLAST of MC07g_new0063 vs. NCBI nr
Match: XP_022150391.1 (uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150392.1 uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150393.1 uncharacterized protein LOC111018564 isoform X3 [Momordica charantia])

HSP 1 Score: 284 bits (726), Expect = 9.91e-95
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 94
           SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS
Sbjct: 93  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 152

Query: 95  VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 154
           VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV
Sbjct: 153 VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 212

Query: 155 KVLLTIVVSLNWPLV 169
           KVLLTIVVSLNWPLV
Sbjct: 213 KVLLTIVVSLNWPLV 227

[Close]

BLAST of MC07g_new0063 vs. NCBI nr
Match: XP_022150388.1 (uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150389.1 uncharacterized protein LOC111018564 isoform X1 [Momordica charantia])

HSP 1 Score: 284 bits (726), Expect = 3.61e-93
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 94
           SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS
Sbjct: 202 SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 261

Query: 95  VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 154
           VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV
Sbjct: 262 VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 321

Query: 155 KVLLTIVVSLNWPLV 169
           KVLLTIVVSLNWPLV
Sbjct: 322 KVLLTIVVSLNWPLV 336

[Close]

BLAST of MC07g_new0063 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 180 bits (456), Expect = 6.29e-49
Identity = 92/164 (56.10%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQK------------------------- 94
           S R ++ PSYL+DYHC L+ +         YPLQK                         
Sbjct: 668 SSRVAQRPSYLRDYHCGLIQATDHSASSVFYPLQKYLDYNNLSASYKEFVLSVSCDYEPQ 727

Query: 95  ----VVPFSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYK 154
                VPFS WR++M +EL  MEANHTWSVVPLP  HHSIGCKW+YK+K+ SDG+I+RYK
Sbjct: 728 FYHQAVPFSHWREAMRAELHAMEANHTWSVVPLPYEHHSIGCKWIYKVKHKSDGSIERYK 787

Query: 155 ARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPLV 169
           ARLVA+GYTQQ+GLDYIETFSP AKLV+VKVLLT+ VS NW LV
Sbjct: 788 ARLVAKGYTQQEGLDYIETFSPVAKLVTVKVLLTLAVSFNWTLV 831

[Close]

BLAST of MC07g_new0063 vs. NCBI nr
Match: XP_022147774.1 (uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147776.1 uncharacterized protein LOC111016631 isoform X1 [Momordica charantia])

HSP 1 Score: 159 bits (402), Expect = 9.91e-45
Identity = 85/160 (53.12%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQK------------------------- 94
           S RD R PSYL+DYHC+L  S  L     +Y LQ+                         
Sbjct: 138 SSRDVRRPSYLRDYHCSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPS 197

Query: 95  ----VVPFSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYK 154
                V +  WRD+M++EL  ME+N+TWSVV LP GHHSIGCKW+YK+K++ DG+I+RYK
Sbjct: 198 FYHHAVSYFHWRDAMNAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVKHNPDGSIERYK 257

Query: 155 ARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLN 165
           ARLVA+GYTQQ+GLDYIETFS  AKLV+VK+LLT+VVS N
Sbjct: 258 ARLVAKGYTQQEGLDYIETFSLVAKLVNVKILLTLVVSHN 296

[Close]

BLAST of MC07g_new0063 vs. NCBI nr
Match: KAA0063422.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK11684.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 6.60e-43
Identity = 77/170 (45.29%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 29  LPLLMWSQRDSRPPSYLKDYHCNLLASAA-LPPFQSRYPLQKVVP----------FSC-- 88
           LP+   S R  +PP++LKDYHC+LLA  + L    S +PL K +           F C  
Sbjct: 106 LPMPCKSTRQHKPPNFLKDYHCHLLAHGSPLKDTTSYHPLNKSLSYEKLNPTHRTFLCNV 165

Query: 89  -----------------WRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSD 148
                            WR++M +E+  ME  +TWS+VPLP GHH++GCKW+YK+KYH+D
Sbjct: 166 STEYEPFFFHQAVKSQSWRNAMDAEIAIMERTNTWSIVPLPHGHHALGCKWVYKVKYHAD 225

Query: 149 GTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPL 168
           GT+D+YKARLV +GY QQ+ +D+++TFSP AK+V+VKVLL++  S  W L
Sbjct: 226 GTVDKYKARLVTKGYGQQEDIDFLDTFSPVAKIVTVKVLLSLTASFGWSL 275

[Close]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL
Match: A0A6J1DBD0 (uncharacterized protein LOC111018564 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 284 bits (726), Expect = 4.80e-95
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 94
           SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS
Sbjct: 93  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 152

Query: 95  VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 154
           VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV
Sbjct: 153 VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 212

Query: 155 KVLLTIVVSLNWPLV 169
           KVLLTIVVSLNWPLV
Sbjct: 213 KVLLTIVVSLNWPLV 227

[Close]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL
Match: A0A6J1D9X8 (uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 284 bits (726), Expect = 1.75e-93
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 94
           SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS
Sbjct: 202 SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVPFSCWRDSMHSELQTMEANHTWS 261

Query: 95  VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 154
           VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV
Sbjct: 262 VVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSV 321

Query: 155 KVLLTIVVSLNWPLV 169
           KVLLTIVVSLNWPLV
Sbjct: 322 KVLLTIVVSLNWPLV 336

[Close]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 3.05e-49
Identity = 92/164 (56.10%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQK------------------------- 94
           S R ++ PSYL+DYHC L+ +         YPLQK                         
Sbjct: 668 SSRVAQRPSYLRDYHCGLIQATDHSASSVFYPLQKYLDYNNLSASYKEFVLSVSCDYEPQ 727

Query: 95  ----VVPFSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYK 154
                VPFS WR++M +EL  MEANHTWSVVPLP  HHSIGCKW+YK+K+ SDG+I+RYK
Sbjct: 728 FYHQAVPFSHWREAMRAELHAMEANHTWSVVPLPYEHHSIGCKWIYKVKHKSDGSIERYK 787

Query: 155 ARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPLV 169
           ARLVA+GYTQQ+GLDYIETFSP AKLV+VKVLLT+ VS NW LV
Sbjct: 788 ARLVAKGYTQQEGLDYIETFSPVAKLVTVKVLLTLAVSFNWTLV 831

[Close]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL
Match: A0A6J1D203 (uncharacterized protein LOC111016631 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016631 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 4.80e-45
Identity = 85/160 (53.12%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 35  SQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQK------------------------- 94
           S RD R PSYL+DYHC+L  S  L     +Y LQ+                         
Sbjct: 138 SSRDVRRPSYLRDYHCSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPS 197

Query: 95  ----VVPFSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYK 154
                V +  WRD+M++EL  ME+N+TWSVV LP GHHSIGCKW+YK+K++ DG+I+RYK
Sbjct: 198 FYHHAVSYFHWRDAMNAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVKHNPDGSIERYK 257

Query: 155 ARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLN 165
           ARLVA+GYTQQ+GLDYIETFS  AKLV+VK+LLT+VVS N
Sbjct: 258 ARLVAKGYTQQEGLDYIETFSLVAKLVNVKILLTLVVSHN 296

[Close]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL
Match: A0A5A7V587 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00610 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.20e-43
Identity = 77/170 (45.29%), Postives = 108/170 (63.53%), Query Frame = 0


Query: 29  LPLLMWSQRDSRPPSYLKDYHCNLLASAA-LPPFQSRYPLQKVVP----------FSC-- 88
           LP+   S R  +PP++LKDYHC+LLA  + L    S +PL K +           F C  
Sbjct: 106 LPMPCKSTRQHKPPNFLKDYHCHLLAHGSPLKDTTSYHPLNKSLSYEKLNPTHRTFLCNV 165

Query: 89  -----------------WRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSD 148
                            WR++M +E+  ME  +TWS+VPLP GHH++GCKW+YK+KYH+D
Sbjct: 166 STEYEPFFFHQAVKSQSWRNAMDAEIAIMERTNTWSIVPLPHGHHALGCKWVYKVKYHAD 225

Query: 149 GTIDRYKARLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPL 168
           GT+D+YKARLV +GY QQ+ +D+++TFSP AK+V+VKVLL++  S  W L
Sbjct: 226 GTVDKYKARLVTKGYGQQEDIDFLDTFSPVAKIVTVKVLLSLTASFGWSL 275

[Close]

BLAST of MC07g_new0063 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-33
Identity = 71/162 (43.83%), Postives = 93/162 (57.41%), Query Frame = 0


Query: 30  PLLMWSQRDSRPPSYLKDYHCNLLASAALPPFQSRYPLQKVVP----------------- 89
           P +  S R +R P+YL+DY+C+ +AS  +         +KV P                 
Sbjct: 29  PSVHTSHRRTRKPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPST 88

Query: 90  ------FSCWRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKA 149
                 F  W  +M  E+  ME  HTW +  LP     IGCKW+YKIKY+SDGTI+RYKA
Sbjct: 89  YNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKA 148

Query: 150 RLVAQGYTQQKGLDYIETFSPFAKLVSVKVLLTIVVSLNWPL 169
           RLVA+GYTQQ+G+D+IETFSP  KL SVK++L I    N+ L
Sbjct: 149 RLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTL 190

[Close]

BLAST of MC07g_new0063 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-20
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 76  WRDSMHSELQTMEANHTWSVVPLPSGHHSIGCKWMYKIKYHSDGTIDRYKARLVAQGYTQ 135
           W  +M  EL  +  N TW +VP P   + +GCKW++K K HSDGT+DR KARLVA+G+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 136 QKGLDYIETFSPFAKLVSVKVLLTIV------VSLNW 167
           ++G+ ++ET+SP  +  +++ +L +        S+NW
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEVGQSINW 136

The following BLAST results are available for this feature:

BLAST of MC07g_new0063 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.7e-24	51.06	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.6e-22	48.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92520	3.6e-19	41.24	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	6.3e-16	40.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.4e-15	36.96	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of MC07g_new0063 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150391.1	9.91e-95	100.00	uncharacterized protein LOC111018564 isoform X3 [Momordica charantia] >XP_022150...	[more]
XP_022150388.1	3.61e-93	100.00	uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150...	[more]
XP_022154919.1	6.29e-49	56.10	uncharacterized protein LOC111022065 [Momordica charantia]	[more]
XP_022147774.1	9.91e-45	53.13	uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147...	[more]
KAA0063422.1	6.60e-43	45.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of MC07g_new0063 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBD0	4.80e-95	100.00	uncharacterized protein LOC111018564 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D9X8	1.75e-93	100.00	uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DNP7	3.05e-49	56.10	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D203	4.80e-45	53.13	uncharacterized protein LOC111016631 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7V587	3.20e-43	45.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of MC07g_new0063 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.4e-33	43.83	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.5e-20	41.24	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 90..167 e-value: 1.7E-20 score: 73.7
None	No IPR available	PANTHER	PTHR11439:SF302	REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED	coord: 94..166
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 94..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g_new0063.1	MC07g_new0063.1	mRNA