MC07g0106 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0106
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	zf-RVT domain-containing protein
Location	MC07: 2072882 .. 2073236 (+)
RNA-Seq Expression	MC07g0106
Synteny	MC07g0106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTGATGATGCATGAGAAGCTAAAACCCTGCTGTAGACTTCAAAAGATGCAGCCTACGAAATGCCTTTCTCATAGTTGGTGTGTGTTATGCAAGAACAATGAAGAAGATCAATGGCATTTGTTGTTTAACTTCCCTTTTGCCCTAGCATGCTGGTCAGATCTCTTTCTAACGTTCAATGTGAGCGGGTGTTTTCCTAACAATGCAGCCAGTGCTTTGCTTCAACTTTCCAAAGGAATAACTCTTACAAAAAAAAAAAAAAAAAGCGAATCTCCTTTGGTCTTGTGGGATTGCCGGGTTGGTTTGGAGATTATGGTTCGAACGCAACAGAAGGTGTTTTTTGGGCCTTGAAACC

mRNA sequence

TGGTTGATGATGCATGAGAAGCTAAAACCCTGCTGTAGACTTCAAAAGATGCAGCCTACGAAATGCCTTTCTCATAGTTGGTGTGTGTTATGCAAGAACAATGAAGAAGATCAATGGCATTTGTTGTTTAACTTCCCTTTTGCCCTAGCATGCTGGTCAGATCTCTTTCTAACGTTCAATGTGAGCGGGTGTTTTCCTAACAATGCAGCCAGTGCTTTGCTTCAACTTTCCAAAGGAATAACTCTTACAAAAAAAAAAAAAGCGAATCTCCTTTGGTCTTGTGGGATTGCCGGGTTGGTTTGGAGATTATGGTTCGAACGCAACAGAAGGTGTTTTTTGGGCCTTGAAACC

Coding sequence (CDS)

TGGTTGATGATGCATGAGAAGCTAAAACCCTGCTGTAGACTTCAAAAGATGCAGCCTACGAAATGCCTTTCTCATAGTTGGTGTGTGTTATGCAAGAACAATGAAGAAGATCAATGGCATTTGTTGTTTAACTTCCCTTTTGCCCTAGCATGCTGGTCAGATCTCTTTCTAACGTTCAATGTGAGCGGGTGTTTTCCTAACAATGCAGCCAGTGCTTTGCTTCAACTTTCCAAAGGAATAACTCTTACAAAAAAAAAAAAAGCGAATCTCCTTTGGTCTTGTGGGATTGCCGGGTTGGTTTGGAGATTATGGTTCGAACGCAACAGAAGGTGTTTTTTGGGCCTTGAAACC

Protein sequence

WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFNVSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCFLGLET

Homology

[Close]

BLAST of MC07g0106 vs. NCBI nr
Match: TQE05898.1 (hypothetical protein C1H46_008581 [Malus baccata])

HSP 1 Score: 80.1 bits (196), Expect = 7.17e-16
Identity = 39/112 (34.82%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL+    L  C ++Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 52  WLVATGSLNTCDKIQRRNPQMCLSPHWCSLCKTKEESVNHIFLHCSYSIQLWWKLFQEVK 111

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
           VS   P      L    K +   KK KA  LW C ++ + W +W ERN+R F
Sbjct: 112 VSWVIPKGCFELLSTNFKALGKGKKSKA--LWGCLVSAIFWNIWLERNKRIF 161

[Close]

BLAST of MC07g0106 vs. NCBI nr
Match: TQD89699.1 (hypothetical protein C1H46_024693 [Malus baccata])

HSP 1 Score: 81.6 bits (200), Expect = 1.20e-15
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL+ +  L  C R+Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 149 WLVANGNLNTCDRIQRRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVK 208

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
            S   P      L    K   L K+KK+ +LW C +  + W +W ERN+R F
Sbjct: 209 ASWVIPKGCFELLSTNFKA--LGKRKKSKVLWGCLVLAIFWNIWMERNKRIF 258

[Close]

BLAST of MC07g0106 vs. NCBI nr
Match: TQD85214.1 (hypothetical protein C1H46_029232 [Malus baccata])

HSP 1 Score: 79.0 bits (193), Expect = 2.27e-14
Identity = 39/112 (34.82%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           W +    L  C ++QK  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 241 WFVATGSLNTCDKIQKRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVK 300

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
           VS   P      L    K +   KK KA  LW C ++ + W +W ERN+R F
Sbjct: 301 VSWVIPKGCFELLSTNFKALGKGKKSKA--LWGCLVSAIFWNIWLERNKRIF 350

[Close]

BLAST of MC07g0106 vs. NCBI nr
Match: RXH68898.1 (hypothetical protein DVH24_031231 [Malus domestica])

HSP 1 Score: 73.6 bits (179), Expect = 5.24e-14
Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 0


Query: 8   LKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFNVSGCFPN 67
           L  C R+Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    VS   P 
Sbjct: 17  LNTCDRIQRRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVKVSWVIPK 76

Query: 68  NAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
                L    K   L K+KK+  LW C ++ + W  W E N+R F
Sbjct: 77  GCFELLGTNFKA--LGKRKKSKALWGCLVSAIFWNTWLECNKRIF 119

[Close]

BLAST of MC07g0106 vs. NCBI nr
Match: XP_024195633.1 (uncharacterized protein LOC112198748 [Rosa chinensis])

HSP 1 Score: 75.5 bits (184), Expect = 1.12e-13
Identity = 40/112 (35.71%), Postives = 52/112 (46.43%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL++  K   C  LQ+ +P  C S  WC+LCK   E   H+  +   A   W  LF    
Sbjct: 87  WLVVLGKTNTCDVLQRRRPGSCFSPHWCILCKAQGESADHVFVHCEVANFLWKKLFWEAR 146

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
           V    P      L +    I   K KKA  LW CG+  +VW +W ERN+R F
Sbjct: 147 VDWTTPLERNDLLRE--NPIAFGKGKKARTLWGCGVLAVVWVIWMERNKRLF 196

[Close]

BLAST of MC07g0106 vs. ExPASy TrEMBL
Match: A0A540N4B1 (zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_008581 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.47e-16
Identity = 39/112 (34.82%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL+    L  C ++Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 52  WLVATGSLNTCDKIQRRNPQMCLSPHWCSLCKTKEESVNHIFLHCSYSIQLWWKLFQEVK 111

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
           VS   P      L    K +   KK KA  LW C ++ + W +W ERN+R F
Sbjct: 112 VSWVIPKGCFELLSTNFKALGKGKKSKA--LWGCLVSAIFWNIWLERNKRIF 161

[Close]

BLAST of MC07g0106 vs. ExPASy TrEMBL
Match: A0A540LTR6 (zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_024693 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.83e-16
Identity = 39/112 (34.82%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL+ +  L  C R+Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 149 WLVANGNLNTCDRIQRRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVK 208

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
            S   P      L    K   L K+KK+ +LW C +  + W +W ERN+R F
Sbjct: 209 ASWVIPKGCFELLSTNFKA--LGKRKKSKVLWGCLVLAIFWNIWMERNKRIF 258

[Close]

BLAST of MC07g0106 vs. ExPASy TrEMBL
Match: A0A540LFH9 (zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_029232 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.10e-14
Identity = 39/112 (34.82%), Postives = 53/112 (47.32%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           W +    L  C ++QK  P  CLS  WC LCK  EE   H+  +  +++  W  LF    
Sbjct: 241 WFVATGSLNTCDKIQKRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVK 300

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
           VS   P      L    K +   KK KA  LW C ++ + W +W ERN+R F
Sbjct: 301 VSWVIPKGCFELLSTNFKALGKGKKSKA--LWGCLVSAIFWNIWLERNKRIF 350

[Close]

BLAST of MC07g0106 vs. ExPASy TrEMBL
Match: A0A498HBR0 (zf-RVT domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_031231 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.54e-14
Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 0


Query: 8   LKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFNVSGCFPN 67
           L  C R+Q+  P  CLS  WC LCK  EE   H+  +  +++  W  LF    VS   P 
Sbjct: 17  LNTCDRIQRRNPLMCLSPHWCSLCKAKEESVNHIFLHCSYSIQLWWKLFQEVKVSWVIPK 76

Query: 68  NAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCF 112
                L    K   L K+KK+  LW C ++ + W  W E N+R F
Sbjct: 77  GCFELLGTNFKA--LGKRKKSKALWGCLVSAIFWNTWLECNKRIF 119

[Close]

BLAST of MC07g0106 vs. ExPASy TrEMBL
Match: M5XV38 (zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019854mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.17e-13
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 1   WLMMHEKLKPCCRLQKMQPTKCLSHSWCVLCKNNEEDQWHLLFNFPFALACWSDLFLTFN 60
           WL  + ++  C  +Q+ QP  CLS SWCVLCK N E+  HL  +  ++L  W  +     
Sbjct: 314 WLAANGRINTCDCIQRRQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLRLWWKMLGALG 373

Query: 61  VSGCFPNNAASALLQLSKGITLTKKKKANLLWSCGIAGLVWRLWFERNRRCFLG 114
           V    P      LL ++  I+  K K+A +L  C +  + W +W ERN+R F G
Sbjct: 374 VEWVIPKGCFE-LLSINLRIS-GKGKRAGILRDCLVHAIFWNIWMERNQRIFQG 425

The following BLAST results are available for this feature:

BLAST of MC07g0106 vs.


Match Name	E-value	Identity	Description

BLAST of MC07g0106 vs. NCBI nr


Match Name	E-value	Identity	Description
TQE05898.1	7.17e-16	34.82	hypothetical protein C1H46_008581 [Malus baccata]	[more]
TQD89699.1	1.20e-15	34.82	hypothetical protein C1H46_024693 [Malus baccata]	[more]
TQD85214.1	2.27e-14	34.82	hypothetical protein C1H46_029232 [Malus baccata]	[more]
RXH68898.1	5.24e-14	35.24	hypothetical protein DVH24_031231 [Malus domestica]	[more]
XP_024195633.1	1.12e-13	35.71	uncharacterized protein LOC112198748 [Rosa chinensis]	[more]

BLAST of MC07g0106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540N4B1	3.47e-16	34.82	zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_008581 PE=4...	[more]
A0A540LTR6	5.83e-16	34.82	zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_024693 PE=4...	[more]
A0A540LFH9	1.10e-14	34.82	zf-RVT domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_029232 PE=4...	[more]
A0A498HBR0	2.54e-14	35.24	zf-RVT domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_031231 PE=4...	[more]
M5XV38	1.17e-13	35.09	zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa019854mg ...	[more]

BLAST of MC07g0106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0106.1	MC07g0106.1	mRNA