MC07g0010 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC07g0010
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S27
Location	MC07: 142443 .. 142907 (+)
RNA-Seq Expression	MC07g0010
Synteny	MC07g0010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTACAGTCACCCAACTCATTTTTCATGGTATTTCGTTTCGCGTAATTCTGTTGCCTTCGATTGAACTGACATTTGCTTCTATAATTGTGATCGAGCTATATCTGTGAATTTTATGTGCAGGACGTGAAGTGCCAAGGTTGCTTTAACATGTAAGTTTTCATCTTTTCCATGTATTGTGATTATTTGACCACTCTTTCCCGTAAAGTTGTGGATGTTTGTTTCTTAAACGGTCGATGACACAAATCTCTTTGAATGAAAAACAGAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGGCGGTTTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACTGAAGGGTGCTCATTTAGAAGGAAGGGCGAC

mRNA sequence

CAGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTACAGTCACCCAACTCATTTTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGGCGGTTTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACTGAAGGGTGCTCATTTAGAAGGAAGGGCGAC

Coding sequence (CDS)

CAGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTACAGTCACCCAACTCATTTTTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGGCGGTTTTGTGCCAGCCAACTGGAGGGCGCGCTAAGCTTACTGAAGGGTGCTCATTTAGAAGGAAGGGCGAC

Protein sequence

QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Homology

[Close]

BLAST of MC07g0010 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-43
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 87
          Q +LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 62 QTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-40
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRK 85
          Q +LC PTGG+AKLTEGCSFR+K
Sbjct: 62 QTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MC07g0010 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-40
Identity = 78/85 (91.76%), Postives = 80/85 (94.12%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  C
Sbjct: 2  VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 87
          Q VLCQPTGG+A+LTEGCSFRRKGD
Sbjct: 62 QTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 7.1e-40
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRK 85
          Q VLCQPTGG+A+L EGCSFR+K
Sbjct: 62 QTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MC07g0010 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-36
Identity = 71/85 (83.53%), Postives = 76/85 (89.41%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C
Sbjct: 2  VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 87
           +VLC PTG   +LTEGCSFRRK D
Sbjct: 62 SSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of MC07g0010 vs. NCBI nr
Match: XP_022148956.1 (40S ribosomal protein S27-2-like [Momordica charantia])

HSP 1 Score: 179 bits (455), Expect = 6.36e-57
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          QAVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. NCBI nr
Match: KAB1201683.1 (40S ribosomal protein S27-2, partial [Morella rubra] >KAB1207694.1 40S ribosomal protein S27-2, partial [Morella rubra])

HSP 1 Score: 179 bits (453), Expect = 1.28e-56
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRAKLTEGCSFRRKGD 86
          CQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. NCBI nr
Match: XP_008459925.1 (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S ribosomal protein S27-2 [Cucumis sativus] >XP_038875285.1 40S ribosomal protein S27-2 [Benincasa hispida] >ADN33695.1 40S ribosomal protein s27 [Cucumis melo subsp. melo] >KAA0039865.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa] >KAE8646752.1 hypothetical protein Csa_005058 [Cucumis sativus] >TYK24636.1 40S ribosomal protein S27-2 [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 2.59e-56
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          Q VLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. NCBI nr
Match: KYP47817.1 (40S ribosomal protein S27-2, partial [Cajanus cajan])

HSP 1 Score: 177 bits (450), Expect = 3.68e-56
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRAKLTEGCSFRRKGD 86
          CQ VLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRKKGD 86

[Close]

BLAST of MC07g0010 vs. NCBI nr
Match: KYP65461.1 (40S ribosomal protein S27-2 [Cajanus cajan])

HSP 1 Score: 177 bits (450), Expect = 3.80e-56
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 2  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 61

Query: 61 CQAVLCQPTGGRAKLTEGCSFRRKGD 86
          CQ VLCQPTGGRA+LTEGCSFR+KGD
Sbjct: 62 CQTVLCQPTGGRARLTEGCSFRKKGD 87

[Close]

BLAST of MC07g0010 vs. ExPASy TrEMBL
Match: A0A6J1D6X7 (40S ribosomal protein S27 OS=Momordica charantia OX=3673 GN=LOC111017497 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 3.08e-57
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          QAVLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy TrEMBL
Match: A0A6A1UNA9 (40S ribosomal protein S27 OS=Morella rubra OX=262757 GN=CJ030_MR0G000299 PE=3 SV=1)

HSP 1 Score: 179 bits (453), Expect = 6.22e-57
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60
          QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN
Sbjct: 1  QVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRAKLTEGCSFRRKGD 86
          CQ VLCQPTGGRA+LTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy TrEMBL
Match: A0A5D3DLW4 (40S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001830 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.26e-56
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          Q VLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy TrEMBL
Match: E5GB53 (40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.26e-56
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          Q VLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. ExPASy TrEMBL
Match: A0A1S3CCJ2 (40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.26e-56
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 86
          Q VLCQPTGGRAKLTEGCSFRRKGD
Sbjct: 62 QTVLCQPTGGRAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 176.8 bits (447), Expect = 7.5e-45
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 87
          Q +LCQPTGG+AKLTEGCSFRRKGD
Sbjct: 62 QTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of MC07g0010 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.8 bits (421), Expect = 7.8e-42
Identity = 77/83 (92.77%), Postives = 81/83 (97.59%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNC
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRK 85
          Q +LC PTGG+AKLTEGCSFR+K
Sbjct: 62 QTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of MC07g0010 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 164.1 bits (414), Expect = 5.0e-41
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC
Sbjct: 2  VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRK 85
          Q VLCQPTGG+A+L EGCSFR+K
Sbjct: 62 QTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of MC07g0010 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-36
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 2  VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNC 61
          VLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG C
Sbjct: 2  VLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGKC 61

Query: 62 QAVLCQPTGGRAKLTEGCSFRRKGD 87
          Q VLCQPTGG+AKLT GCSFR+  D
Sbjct: 62 QNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of MC07g0010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	1.1e-43	96.47	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
O64650	1.1e-40	92.77	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q96564	2.4e-40	91.76	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
Q8L953	7.1e-40	91.57	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	3.6e-36	83.53	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of MC07g0010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148956.1	6.36e-57	100.00	40S ribosomal protein S27-2-like [Momordica charantia]	[more]
KAB1201683.1	1.28e-56	97.67	40S ribosomal protein S27-2, partial [Morella rubra] >KAB1207694.1 40S ribosomal...	[more]
XP_008459925.1	2.59e-56	98.82	PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo] >XP_011656784.1 40S riboso...	[more]
KYP47817.1	3.68e-56	96.51	40S ribosomal protein S27-2, partial [Cajanus cajan]	[more]
KYP65461.1	3.80e-56	96.51	40S ribosomal protein S27-2 [Cajanus cajan]	[more]

BLAST of MC07g0010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6X7	3.08e-57	100.00	40S ribosomal protein S27 OS=Momordica charantia OX=3673 GN=LOC111017497 PE=3 SV...	[more]
A0A6A1UNA9	6.22e-57	97.67	40S ribosomal protein S27 OS=Morella rubra OX=262757 GN=CJ030_MR0G000299 PE=3 SV...	[more]
A0A5D3DLW4	1.26e-56	98.82	40S ribosomal protein S27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GB53	1.26e-56	98.82	40S ribosomal protein S27 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CCJ2	1.26e-56	98.82	40S ribosomal protein S27 OS=Cucumis melo OX=3656 GN=LOC103498897 PE=3 SV=1	[more]

BLAST of MC07g0010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	7.5e-45	96.47	ribosomal protein S27	[more]
AT2G45710.1	7.8e-42	92.77	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	5.0e-41	91.57	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	2.2e-36	82.35	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 5..85 e-value: 1.0E-48 score: 165.2
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 e-value: 3.2E-27 score: 94.0
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 2..85
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16.658947
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 2..85
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC07g0010.1	MC07g0010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0042788	polysomal ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome