MC06g2146 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC06g2146
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUvrABC system protein C
LocationMC06: 28897098 .. 28897289 (+)
RNA-Seq ExpressionMC06g2146
SyntenyMC06g2146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCAC

mRNA sequence

TACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCAC

Coding sequence (CDS)

TACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCAC

Protein sequence

YSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRISCSRTRRRRPFLRLHH
Homology
BLAST of MC06g2146 vs. NCBI nr
Match: KAG6590523.1 (hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 4.85e-14
Identity = 41/68 (60.29%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRISC-----SRTRRR 61
           S +MEKR+LFLRSYQFC K+SVP+KI   +LK+KR+IW RL+  L  SC     SR+RRR
Sbjct: 36  STLMEKRQLFLRSYQFCTKKSVPQKINASLLKIKRVIWVRLKNLLLHSCRLRNASRSRRR 95

Query: 62  RPFLRLHH 64
           R  +RLHH
Sbjct: 96  RS-VRLHH 102

BLAST of MC06g2146 vs. NCBI nr
Match: OAY43888.1 (hypothetical protein MANES_08G105900v8 [Manihot esculenta])

HSP 1 Score: 66.6 bits (161), Expect = 3.68e-12
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPAL--------RISCS-R 61
           SLMMEKRRLFLRSYQFCRK+S+ E+IK  + ++K+++W RLR A         R+ C+  
Sbjct: 32  SLMMEKRRLFLRSYQFCRKKSLTERIKLSLFRVKKVMWLRLRSARKLRRLVWSRLRCAFY 91

Query: 62  TRRRRPFLRL----HH 64
            RRRR FLRL    HH
Sbjct: 92  CRRRRSFLRLRSPNHH 107

BLAST of MC06g2146 vs. NCBI nr
Match: XP_021652269.1 (uncharacterized protein LOC110644003 [Hevea brasiliensis])

HSP 1 Score: 65.9 bits (159), Expect = 7.74e-12
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRI---------SCSR 61
           SLMMEKR+LFLRSYQFCRK+S+ E+IK  ++++K++IW RLR A ++         S   
Sbjct: 30  SLMMEKRQLFLRSYQFCRKKSLTERIKRSLVRVKKVIWLRLRSARKLRRLVWSRLRSAFY 89

Query: 62  TRRRRPFLRL----HH 64
            RRRR FLRL    HH
Sbjct: 90  CRRRRSFLRLRSPNHH 105

BLAST of MC06g2146 vs. NCBI nr
Match: PON75840.1 (hypothetical protein TorRG33x02_244540 [Trema orientale])

HSP 1 Score: 65.5 bits (158), Expect = 1.61e-11
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR---ISCSRTR---- 61
           S+MMEKR+LFLRSYQFCRK+S+ E+IK  ++++KR+IW RL+ A R   ++C R R    
Sbjct: 49  SMMMEKRQLFLRSYQFCRKKSLTERIKRSLVRVKRVIWLRLKSARRFRKLACFRLRCGFS 108

BLAST of MC06g2146 vs. NCBI nr
Match: XP_024020430.1 (uncharacterized protein LOC21405490 [Morus notabilis] >EXB57574.1 hypothetical protein L484_022681 [Morus notabilis])

HSP 1 Score: 63.2 bits (152), Expect = 9.02e-11
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 3   LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR---ISCSRTR----- 62
           +MMEKR+LFLRSYQFCRK+++ E+IK  ++++KR+IW RL+ A R   ++C R R     
Sbjct: 40  MMMEKRQLFLRSYQFCRKQTLSERIKRSLVRVKRVIWLRLKSARRFRKLACFRVRCGFSY 99

BLAST of MC06g2146 vs. ExPASy TrEMBL
Match: A0A2C9VF74 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G105900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.78e-12
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPAL--------RISCS-R 61
           SLMMEKRRLFLRSYQFCRK+S+ E+IK  + ++K+++W RLR A         R+ C+  
Sbjct: 32  SLMMEKRRLFLRSYQFCRKKSLTERIKLSLFRVKKVMWLRLRSARKLRRLVWSRLRCAFY 91

Query: 62  TRRRRPFLRL----HH 64
            RRRR FLRL    HH
Sbjct: 92  CRRRRSFLRLRSPNHH 107

BLAST of MC06g2146 vs. ExPASy TrEMBL
Match: A0A2P5DRC2 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_244540 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.79e-12
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR---ISCSRTR---- 61
           S+MMEKR+LFLRSYQFCRK+S+ E+IK  ++++KR+IW RL+ A R   ++C R R    
Sbjct: 49  SMMMEKRQLFLRSYQFCRKKSLTERIKRSLVRVKRVIWLRLKSARRFRKLACFRLRCGFS 108

BLAST of MC06g2146 vs. ExPASy TrEMBL
Match: W9R863 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022681 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.37e-11
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 3   LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR---ISCSRTR----- 62
           +MMEKR+LFLRSYQFCRK+++ E+IK  ++++KR+IW RL+ A R   ++C R R     
Sbjct: 40  MMMEKRQLFLRSYQFCRKQTLSERIKRSLVRVKRVIWLRLKSARRFRKLACFRVRCGFSY 99

BLAST of MC06g2146 vs. ExPASy TrEMBL
Match: A0A2C9VBU8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G182800 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.47e-11
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 2   SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPAL---RISCSRTR---- 61
           SLMMEKR+LFLRSYQFCRK+S+ EKIK +++++K+++W +LR A    R+  SR R    
Sbjct: 30  SLMMEKRQLFLRSYQFCRKKSLTEKIKRYLVRVKKVMWLKLRSACKLRRLVWSRLRYSFY 89

Query: 62  --RRRPFLRL----HH 64
             RRR F+R     HH
Sbjct: 90  CRRRRNFIRFRSPNHH 105

BLAST of MC06g2146 vs. ExPASy TrEMBL
Match: A0A6P3YRG7 (uncharacterized protein LOC107403540 OS=Ziziphus jujuba OX=326968 GN=LOC107403540 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.95e-11
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0

Query: 3   LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR---ISCSRTR----- 62
           +MMEKR+LFL+SY+FCRK+S+ E+IK  ++++KR+IW RLR A R   + C R R     
Sbjct: 50  MMMEKRQLFLKSYKFCRKKSLTERIKRSLIRVKRVIWLRLRAARRFRGLVCFRLRHGLSY 109

Query: 63  RRRPFLRL----HH 64
           RRR FLRL    HH
Sbjct: 110 RRRRFLRLLNNYHH 123

BLAST of MC06g2146 vs. TAIR 10
Match: AT5G26731.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-07
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1  YSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA---LRISCSRTR--- 60
          Y   MEKR+LFLRSYQF RK+S  EK+   V ++KR++  RLR A    R+  SR R   
Sbjct: 20 YGEYMEKRQLFLRSYQFSRKQSFAEKVSRSVTRVKRVVLTRLRSAPKLKRVVWSRLRSAF 79

Query: 61 --RRRPFLRLHH 65
            RRR F RL H
Sbjct: 80 YYRRRRFFRLLH 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6590523.14.85e-1460.29hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sorori... [more]
OAY43888.13.68e-1253.95hypothetical protein MANES_08G105900v8 [Manihot esculenta][more]
XP_021652269.17.74e-1252.63uncharacterized protein LOC110644003 [Hevea brasiliensis][more]
PON75840.11.61e-1155.07hypothetical protein TorRG33x02_244540 [Trema orientale][more]
XP_024020430.19.02e-1152.94uncharacterized protein LOC21405490 [Morus notabilis] >EXB57574.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
A0A2C9VF741.78e-1253.95Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G105900 PE=4 SV=... [more]
A0A2P5DRC27.79e-1255.07Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_244540 PE=4 SV... [more]
W9R8634.37e-1152.94Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022681 PE=4 SV=1[more]
A0A2C9VBU84.47e-1151.32Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G182800 PE=4 SV=... [more]
A0A6P3YRG75.95e-1152.70uncharacterized protein LOC107403540 OS=Ziziphus jujuba OX=326968 GN=LOC10740354... [more]
Match NameE-valueIdentityDescription
AT5G26731.12.7e-0750.00unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC06g2146.1MC06g2146.1mRNA