MC05g_new0017 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g_new0017
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC05: 1521204 .. 1523775 (+)
RNA-Seq ExpressionMC05g_new0017
SyntenyMC05g_new0017
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTAAAAGTTCAAAGCTTCACATGGAAGAGTAATATAGAGAAGAAAAGTTAAAATTTAAATATTGAAATTAAAGTTTAACCAAAATTTCCTCTCCTACATTATGTAAAGTGAATTAGGTGGCCCTGCTTAGATTCTGACAACTCTGCATAACACAACAAAGTGAATGAGCATAATTGACAGTAGAAAAGTGCTAATCATTGAGACAATTCTCAGGCTTCAAAAGCACACTGCCTTGAGTTTAAAACTTTTAGAACTCCACTAGAGTGCAGACAATTCTGATCGGTTACTCTCAGCTAAATCCCAAAAAGAAAAAGAAAAATATGAAAACTCTTTCCTAAAGCTCTCACCGAATATGATGCATCAGTAACTTCTTTGAGGAGGCTTGTAAATTGTAAGATGTACACTCAACTTAAGTCCATCCTGTTTGCTAATCTGGTATAAATCTGGGCTTCTTCTGTGATTTCACCAATATATTACAAAAATAAGAGTAAAAGAATTTTCAAATTTTGTACAGTTTGTAAATCTACTGTCAACTGGGAATGATGCAACTCTTCCCTTTTTCATAGTTTGTAAAACCCAGTCTCCCAGTTGAAACAGATCTGTTCATTCCCAAGTTGGAAACCCCATTTTTGTGATTGGATTGGAAATGCTCTTGAACAAATACTTTTGAAGATCCAATTCCCATTTGCATTTCATCTTCCTCTACCTCTTCCTCACTATCTTGACTTTCTCTCAATATATCAGCAACAGAAACCTGCCCTTGCCATGAAAAAGAATCCAAGGAAACTGACCTTCTAAATGGCTGAACAACATCACCAACAACATCATCTTCTCTAACTTGAATCATTCTATCTCTTGGCTCTGAATCTTGACTAACTGATGCAAAACTTTGCCTTTGATTCTTGGAGGAAGCACCATCATTTTCTATCCCCAAAACAGCAGTCTGTTGGCTCACTGTTAAATCCTGCAAATCTTGAACCACTACAACAACTACTGTGTCATTGCTTCTGTGCTGATACTGAAGAGCAGCTGCATTTATGTGTTCTGTTCTTTGAATTTCTTGAGTTGGGGGTGGGAAAAGATTGGTGGGTGAAATGTTGGAGCGGCAGAGAGGGCAAGTGGAGTGAGATTTGAGCCATGTGTCGATGCAGGGAAGATGAAAGGCATGGCTGCACTTTGGCAGCAGCCTTAAGCTCTCATTTTCTTGAAACTCACTCAGGCAAACGGAGCAATCCGTGCCTTCAACTAACCCATCTCCTCGTATGTACTTGCAGACCGTGATGGACTTGATGAGAGCCTCATCCAGGCCTGCTGGAGGAGCTTGGAGCTGGTTTTCATGGCGGATTTGGGCAAGATTCTCTTCATCATCCATTTCCATGGCGGCGGAGGTGGTGGCGGCCCTGTTCCTGCAGTACTTGGAGATGATGGTGTAGTAGCTTACCAAGATGAAGGCGCTGGCCAAGATTCCAATGATGGCGATGATGAGAGGGGAGAAATCAGTGCCAGAATCGCCATTGTTGCCATAGCCAAAAGGTGGAGGTGGTGGGAAGATGATGTAGCACCACTGAGGGCAATATATGCTGCAAATCTCTAAAGAACAGTCCTTGTAAGCATATGGCTGCCATTGATTTGAGTTTCCCACAGAACCCATTTTCCTCTGCCACTTGTAGATCTTGCAGGTACCCCTATTCTCTCTTTTTTCATGTGTTTATGTGGTAAAGACTAGAGAGAGAGAGAGAGAAAGAGGAGAGAGAGTTTGAAGGAGGAGGGGCAGGCAGTAGAAAAAGAAAGCAAAATGGGGGACTTGGATGCAAAGTGAAGGAAAGTGGAGGAGGTAGGAAATTGATATATCACTTATCCTCTCTCTTTCTCTCTCTCTCTTCTTTTTCTTTTTCAATTCTTGTCCTTTCCTTTCACTTTTTTCTTTTGAGTCCTTTCCTTGAGAAACATATCTTGAGCCAAAGAAATAATATCGAAATTAGTTTGTCTAAATTCCTTGTGTGAGGCATTAGGTTTCACTCAAAGTTAAGTGATATCAAGTTTTCCATTGACAAAGGGAAGAAGATGAGTGTAGGTGTGTGTTTGATAAAGCTATAAGTGAACTCTAAGAAAGAAAGGTGGGTGAACTTAGGTAACACTCCCACCTAAATTCTTTTCCCATCCATTGATGTTATTTATAGCCATCTCTTTTGATTTTTCTTCCTCGATTTTTCTCCGATTACCAGAAGAATAACTTTTTCCAGGCATGGACTTGTTTTATCAAACATAAATTTGATATTTTTTTGTTTTAAAAATATGGGAGATTACGATGGAGAATGAAACAGGCCTGGAAATGAAAAGCCTGAGATCATATGGTTTGTAAAATAATTGGACGGTGAAAATAGACGATGGATGTCTTGTTGAATTGATCGAGTTTCTAACTTTTTATTTGGCAGGCAACATTGATAAGGAAGATAAAAATATTAATCAGTACCTCAACAATTTAGGTCTCGTTTGGTAATGTTCCCGTTCCTTGTTCATCGTTTTCAATTTGCTTTAAAAATAAAGAAATAGAAACGTTACCAAACGAG

mRNA sequence

ATGAAAGACCGTGATGGACTTGATGAGAGCCTCATCCAGGCCTGCTGGAGGAGCTTGGAGCTGGTTTTCATGGCGGATTTGGGCAAGATTCTCTTCATCATCCATTTCCATGGCGGCGGAGGTGGTGGCGGCCCTGTTCCTGCAGTACTTGGAGATGATGGTGTAGTAGCTTACCAAGATGAAGGCGCTGGCCAAGATTCCAATGATGGCGATGATGAGAGGGGAGAAATCAGTGCCAGAATCGCCATTGTTGCCATAGCCAAAAGGTGGAGGTGGTGGGAAGATGATGTAGCACCACTGAGGGCAATATATGCTGCAAATCTCTAA

Coding sequence (CDS)

ATGAAAGACCGTGATGGACTTGATGAGAGCCTCATCCAGGCCTGCTGGAGGAGCTTGGAGCTGGTTTTCATGGCGGATTTGGGCAAGATTCTCTTCATCATCCATTTCCATGGCGGCGGAGGTGGTGGCGGCCCTGTTCCTGCAGTACTTGGAGATGATGGTGTAGTAGCTTACCAAGATGAAGGCGCTGGCCAAGATTCCAATGATGGCGATGATGAGAGGGGAGAAATCAGTGCCAGAATCGCCATTGTTGCCATAGCCAAAAGGTGGAGGTGGTGGGAAGATGATGTAGCACCACTGAGGGCAATATATGCTGCAAATCTCTAA

Protein sequence

MKDRDGLDESLIQACWRSLELVFMADLGKILFIIHFHGGGGGGGPVPAVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVAIAKRWRWWEDDVAPLRAIYAANL
Homology
[Close]
BLAST of MC05g_new0017 vs. NCBI nr
Match: KAG7018889.1 (hypothetical protein SDJN02_20762, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (393), Expect = 5.87e-46
Identity = 78/102 (76.47%), Postives = 84/102 (82.35%), Query Frame = 0 

Query: 2   KDRDGLDESLIQACWR--SLELVFMADLGKILFIIHFHGGGGGGGPVPAVLGDDGVVAYQ 61
           +D DGLDES+IQAC R  SL+LVFMADLGKI FIIHFH   GG   VPA+ GDDGVVAY 
Sbjct: 67  QDCDGLDESMIQACRRRRSLQLVFMADLGKIFFIIHFHDSVGGSSSVPAIFGDDGVVAYH 126

Query: 62  DEGAGQDSNDGDDERGEISARIAIVAIAKRWRWWEDDVAPLR 101
           +EGA QDSNDGDDER EIS  IAI AIAKRWRWW+DDVAPLR
Sbjct: 127 NEGASQDSNDGDDERREISGGIAIAAIAKRWRWWKDDVAPLR 168

[Close]
BLAST of MC05g_new0017 vs. NCBI nr
Match: BAH91849.1 (Os02g0691901 [Oryza sativa Japonica Group] >BAS80385.1 Os02g0691900 [Oryza sativa Japonica Group])

HSP 1 Score: 57.0 bits (136), Expect = 7.05e-07
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVA----IAKRWRWWEDDVAPLRAI 107
           AVLG DGVVA ++EGA +  +DGDDER E  A   + A    +  R RW ED+VAPLRA+
Sbjct: 150 AVLGYDGVVADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAV 209

[Close]
BLAST of MC05g_new0017 vs. NCBI nr
Match: VVA96343.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 51.2 bits (121), Expect = 5.48e-06
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEI-SARIAIVAIAKRWRWWEDDVAPLRAIYAA 106
           AV GD+ VVA +DEG  +DS++ D+ER EI   R+      +R R WED V PLR +  A
Sbjct: 2   AVFGDECVVADEDEGTSEDSDESDEERREIRGGRVVFFVEEERRRRWEDYVTPLRTVDTA 61

[Close]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match: A0A453PB00 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.51e-09
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEISAR-IAIVAIAK-------RWRWWEDDVAP 107
           AVLGDDGVVA ++EGAG+  +DGDDE  E  A  +  VA+A        R R WED+VAP
Sbjct: 292 AVLGDDGVVADEEEGAGEHPDDGDDEGREGGAGGVVAVAVAAGAGDVEDRRRGWEDEVAP 351

[Close]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match: A0A0A9EUU7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.49e-08
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 43  GGPVPAVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVA----IAKRWRWWEDDVA 102
           GG   AVLGDDGVVA ++EGAG+ ++DGDDE  E  A   + A    +  R R  ED+VA
Sbjct: 22  GGEGAAVLGDDGVVADEEEGAGEHADDGDDEGREGGAGGVVAAGAGDVEGRRRGREDEVA 81

Query: 103 PLRAIYAAN 107
           PLRA+ AA 
Sbjct: 82  PLRAVPAAQ 90

[Close]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match: A0A0N7KFW9 (Os02g0691901 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0691901 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.41e-07
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVA----IAKRWRWWEDDVAPLRAI 107
           AVLG DGVVA ++EGA +  +DGDDER E  A   + A    +  R RW ED+VAPLRA+
Sbjct: 150 AVLGYDGVVADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAV 209

[Close]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match: C7IZ11 (Os02g0691900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0691900 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.41e-07
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVA----IAKRWRWWEDDVAPLRAI 107
           AVLG DGVVA ++EGA +  +DGDDER E  A   + A    +  R RW ED+VAPLRA+
Sbjct: 150 AVLGYDGVVADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAV 209

[Close]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match: A0A0D3F962 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.74e-07
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 0 

Query: 48  AVLGDDGVVAYQDEGAGQDSNDGDDERGEISARIAIVA----IAKRWRWWEDDVAPLRAI 107
           AVLG DGVVA ++EGA +  +DGDDER E  A   + A    +  R RW ED+VAPLRA+
Sbjct: 150 AVLGYDGVVADEEEGAREHPDDGDDERREGWAGGVVGAGAGDVEGRRRWREDEVAPLRAV 209

The following BLAST results are available for this feature:
BLAST of MC05g_new0017 vs.
Match NameE-valueIdentityDescription
BLAST of MC05g_new0017 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018889.15.87e-4676.47hypothetical protein SDJN02_20762, partial [Cucurbita argyrosperma subsp. argyro... [more]
BAH91849.17.05e-0753.13Os02g0691901 [Oryza sativa Japonica Group] >BAS80385.1 Os02g0691900 [Oryza sativ... [more]
VVA96343.15.48e-0646.67unnamed protein product [Arabis nemorensis][more]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A453PB004.51e-0954.41Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A0A9EUU71.49e-0852.17Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0N7KFW93.41e-0753.13Os02g0691901 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0691901 PE... [more]
C7IZ113.41e-0753.13Os02g0691900 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0691900 PE... [more]
A0A0D3F9623.74e-0753.13Uncharacterized protein OS=Oryza barthii OX=65489 PE=4 SV=1[more]
BLAST of MC05g_new0017 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g_new0017.1MC05g_new0017.1mRNA