MC05g1611 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g1611
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein L17
LocationMC05: 19829457 .. 19831628 (-)
RNA-Seq ExpressionMC05g1611
SyntenyMC05g1611
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCGTTTACAACGGCAGCGACCAACAGCCGATGGAGCTTAACAGCATTGAGGGCAGCGCTACCTTCTGTGGGAGTAGAGATTCATACTCCCGCTCGCGTCAGCTTCCCGTCGGCCACTGGTCGAGTCAGTTGCAGAACCTGCAGCAAACCGATCGCCTCTTTTTCGGGTCTATGCCCTTTGAACCCTCTCATTTCTACTGGTTTATCAGGTAATTCCATTTACTCTCACTCGTTTTTTATATGGCCCCATCTAATTTGATTTTTCCTCTGCTAATTCATGCGTCTACTCTGCTTCTTATGGCAAACTGATTCATACCCTACTAATCGAATGGTTCTGCAATGTTTTATCGTTTAAAGTTTGATTTCTATTTGAATTGATTCGTCTCTTCTATTCGGCAGTGTTCTATATAAATTTTGTAGTGAAGTCGCCTGCTAATTTTGGTAACAATGGGAAATCTTAAGTTCATATTCGCTGAAAATGAAACATTGTTCACAGTTTCGTTCCACACCTATCAGGAAACAATTCGAGCGAATCTCTCTTGCCTAGCCGTGCTGCATTTTGTCTGTGGTACTCTTGTCAACCACAGGATTGGATTGGCTGGTATCCCGTGGTCCATCGTAGTTCAGAATTCTTTCAAAGGGTGGTTGGTAGGAATCTTGGGATTACCATAGGAACGACATTTAGTATTTGGTTAGTATTTTGATTGAATTCCTAGGCCTGGAATTATGATAAATATGCCCATTGATTGAAGTAGGTGGATTTTGCGGATTTCTATCATTAAGTATCCATCCTCCATTAACTTTCATTTTCTACTCCTACCCATTGACAAGCACGATAGCTCAAATATTTTCTTCCCTCGCGCTGCAACTACCTACGGGTCCTAGATTGAATTTCTTAGCGTCCCATCCGTTGCTCCTTTGCTTAGTGTTTCCCCTTGCCCTAATGTATTCAGACCTGAATTGAACACCTGTCTCTTGGGCACCACAATTTTATTCCCAACATTTTGTATCCATAGTACCGAGTGGTCTATAATGCGCTTGATTAATACATGGTTGAATATAAATTCTTCATATTAGATTAAAGTCTTGTGCATATGATATAATTGTTTCCCTCTATGGAGCCTATTATTACTTTCACATATTAATTGACAAGCTATGTTTATATTCCAACATTATTCTATGAAAGATAATACAAATTCCTAGATGCATTTGTTATACAAATACTCAATGCATTTCAGGTTATGAATTCAAGCCTTAGTCGATGAGGATTGTACAAGTTTCTTGACAGTGAATATCGTGGAGTTAGGCAATTAGCTTGTGAAATTAGATGATGTATGATATAAGCTAGCTCAGACGCCCATAATTTTAATAAGAATGATATGTAATCATCATGAGTTGATTTAGTTATCTTTAAGGTCCAATGTAAATAGTAAAAAGCTTAGAGAGAATAAGTTCAAACCATAGTGGCTACCTACCTATGATTTAATAGCTTATGAGTTACTTTGACAACCAAATGTAATAGGGTTAGTCAGTTGTCCTATGAGATTAGTTGAGGTGCACGGCCTGAACACTCACGGATATTAGAAAAATATAGAATAAGAATGATATGTTGTTATTTGTTACATAATTTTATCAAATAAATTCAGTTATTTTAATCCCGAGTTTCATACAAGTTCATGGGAGCAAGATCTTCAGACAGCTTTTTATTCAGTGTACTAACTACTGTAGAACCTGTGATGCGCTTGTCCAACATGCAGATTTTGACAGCTTTGAACATAATTTTACAATTGTTGATAGTGGTTGTCGATATTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAATAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACTACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAGCGAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATAACATTAGCAAAGGAAGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGGTTCGTCTACGAAAAACAAATTGTCCATGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATTAGAACACTGCCAAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTC

mRNA sequence

ATGGCAATGGCGTTTACAACGGCAGCGACCAACAGCCGATGGAGCTTAACAGCATTGAGGGCAGCGCTACCTTCTGTGGGAGTAGAGATTCATACTCCCGCTCGCGTCAGCTTCCCGTCGGCCACTGGTCGAGTCAGTTGCAGAACCTGCAGCAAACCGATCGCCTCTTTTTCGGGTCTATGCCCTTTGAACCCTCTCATTTCTACTGGTTTATCAGATTTTGACAGCTTTGAACATAATTTTACAATTGTTGATAGTGGTTGTCGATATTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAATAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACTACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAGCGAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATAACATTAGCAAAGGAAGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGGTTCGTCTACGAAAAACAAATTGTCCATGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATTAGAACACTGCCAAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTC

Coding sequence (CDS)

ATGGCAATGGCGTTTACAACGGCAGCGACCAACAGCCGATGGAGCTTAACAGCATTGAGGGCAGCGCTACCTTCTGTGGGAGTAGAGATTCATACTCCCGCTCGCGTCAGCTTCCCGTCGGCCACTGGTCGAGTCAGTTGCAGAACCTGCAGCAAACCGATCGCCTCTTTTTCGGGTCTATGCCCTTTGAACCCTCTCATTTCTACTGGTTTATCAGATTTTGACAGCTTTGAACATAATTTTACAATTGTTGATAGTGGTTGTCGATATTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTCAATAGGCCTCCTGACCAACGGCGTGCACTATTGCGAGGGCTCACTACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAGCGAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATAACATTAGCAAAGGAAGGTTCTTTGCATAAAAGGAGACAGGCTTTAGGGTTCGTCTACGAAAAACAAATTGTCCATGCTTTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAATGGTGGATATACCAGAATTATTAGAACACTGCCAAGGCGAGGGGACAATGCGCCTATGGCATACATTGAACTTGTC

Protein sequence

MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Homology
[Close]
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 8.7e-76
Identity = 150/208 (72.12%), Postives = 172/208 (82.69%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMA  T + +  WS+++L++ALPS    +  P+  S    T R+   + S P  SFSGL
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPST-ASLRLPSSSSRRPVTLRLPISSPSLP--SFSGL 66

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
            P+NPL+S GL D+ SFE+ F IVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQL
Sbjct: 67  SPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQL 126

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRARASAMRK+VDKMITLAK+GSLHKRRQALG++YEKQIVHALFAEV DRYG
Sbjct: 127 LKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYG 186

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-73
Identity = 140/204 (68.63%), Postives = 168/204 (82.35%), Query Frame = 0 

Query: 8   AATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSC---RTCSKPIASFSGLCPLN 67
           A+ ++ WS++ L++ALPS+     +  R S   +  R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 68  PLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 127
           PL+S    D  SFEH+FT++D+G R FAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 128 RIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYGERNG 187
           RIKTT+ARA A+RKYVDKMIT+AK+GSLHKRRQALGF+YEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 188 GYTRIIRTLPRRGDNAPMAYIELV 209
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

[Close]
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 224.9 bits (572), Expect = 8.2e-58
Identity = 108/126 (85.71%), Postives = 122/126 (96.83%), Query Frame = 0 

Query: 83  IVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDK 142
           ++D+G R+FAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTRA+ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 143 MITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 202
           MITLAKEGSLHKRRQALGF+YEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 203 AYIELV 209
           AYIELV
Sbjct: 121 AYIELV 126

[Close]
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.2e-40
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 0 

Query: 93  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSL 152
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA A+R  VD+MITLAK+GSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 153 HKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match: A2CC52 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.0e-40
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = 0 

Query: 93  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSL 152
           MRH  RVPKL RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R   ++MITLAK GSL
Sbjct: 1   MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSL 60

Query: 153 HKRRQALGFVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
             RR+A+G++Y+KQ+VHALF + QDRYG+R GGYTRIIRT+PRRGDNA MA IELV
Sbjct: 61  ASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116

[Close]
BLAST of MC05g1611 vs. NCBI nr
Match: XP_022157331.1 (50S ribosomal protein L17, chloroplastic [Momordica charantia])

HSP 1 Score: 411 bits (1056), Expect = 1.28e-144
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]
BLAST of MC05g1611 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 357 bits (917), Expect = 1.98e-123
Identity = 181/208 (87.02%), Postives = 190/208 (91.35%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMA TTA  N RWS T LR+ALPSV  EI TP+RVSFP +  RV+ RTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGL D++ FEHNF IVDSG R+FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]
BLAST of MC05g1611 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 351 bits (901), Expect = 5.44e-121
Identity = 179/208 (86.06%), Postives = 187/208 (89.90%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG E  T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]
BLAST of MC05g1611 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 348 bits (892), Expect = 1.37e-119
Identity = 177/208 (85.10%), Postives = 186/208 (89.42%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MA+   TA  N RWS T LR+ALPSVG EI T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 3   MAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFSGL 62

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 63  CPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 122

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 123 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 182

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 183 ERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]
BLAST of MC05g1611 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347 bits (889), Expect = 3.93e-119
Identity = 177/210 (84.29%), Postives = 193/210 (91.90%), Query Frame = 0 

Query: 1   MAMAFTTAAT--NSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60
           MAMA TTA    NSRWS +++R+ALPSV V + TP+RVSFPS+ GRVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SD++SFE NFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRARASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 411 bits (1056), Expect = 6.21e-145
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL
Sbjct: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 2.63e-121
Identity = 179/208 (86.06%), Postives = 187/208 (89.90%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMA TTA  N RWS T LR+ALPSVG E  T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 1   MAMAITTATANGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFSGL 60

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 61  CPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 121 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 180

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 348 bits (892), Expect = 6.65e-120
Identity = 177/208 (85.10%), Postives = 186/208 (89.42%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MA+   TA  N RWS T LR+ALPSVG EI T  RVSFP +  RVS RTCSKPIASFSGL
Sbjct: 3   MAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFSGL 62

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
           CPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTTQL
Sbjct: 63  CPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 122

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDRYG
Sbjct: 123 LKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYG 182

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 183 ERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 347 bits (889), Expect = 1.90e-119
Identity = 177/210 (84.29%), Postives = 193/210 (91.90%), Query Frame = 0 

Query: 1   MAMAFTTAAT--NSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60
           MAMA TTA    NSRWS +++R+ALPSV V + TP+RVSFPS+ GRVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SD++SFE NFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRARASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 343 bits (879), Expect = 6.36e-118
Identity = 175/210 (83.33%), Postives = 191/210 (90.95%), Query Frame = 0 

Query: 1   MAMAFTTAAT--NSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60
           MAMA TTA    NSRWS +++R+ALP V V + TP+RVSFPS+ GR S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS G SD++SFE NFTIVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRARASA+RKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]
BLAST of MC05g1611 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 284.6 bits (727), Expect = 6.2e-77
Identity = 150/208 (72.12%), Postives = 172/208 (82.69%), Query Frame = 0 

Query: 1   MAMAFTTAATNSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFSGL 60
           MAMA  T + +  WS+++L++ALPS    +  P+  S    T R+   + S P  SFSGL
Sbjct: 7   MAMATPTDSVSRVWSMSSLKSALPST-ASLRLPSSSSRRPVTLRLPISSPSLP--SFSGL 66

Query: 61  CPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTTQL 120
            P+NPL+S GL D+ SFE+ F IVD G R +AMRHG+RVPKLNRPPDQR+ALLRGLTTQL
Sbjct: 67  SPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQL 126

Query: 121 LKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDRYG 180
           LKHGRIKTTRARASAMRK+VDKMITLAK+GSLHKRRQALG++YEKQIVHALFAEV DRYG
Sbjct: 127 LKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYG 186

Query: 181 ERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           ERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 187 ERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]
BLAST of MC05g1611 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-23
Identity = 54/108 (50.00%), Postives = 72/108 (66.67%), Query Frame = 0 

Query: 101 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALG 160
           KL RP   R ++LR + +QL+KH RI+TT  +A  +R+  D MI L KEGSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 161 FVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           FV    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]
BLAST of MC05g1611 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-23
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 0 

Query: 101 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALG 160
           KL RP   R ++LR + +QL++H RI+TT  +A  +R+  D MI L KEGSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 161 FVYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 209
           FV    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:
BLAST of MC05g1611 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3858.7e-7672.1250S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
O803631.8e-7368.6350S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P... [more]
P821948.2e-5885.7150S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P... [more]
B1XJI31.2e-4068.1050S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P... [more]
A2CC522.0e-4068.9750S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 ... [more]
BLAST of MC05g1611 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157331.11.28e-144100.0050S ribosomal protein L17, chloroplastic [Momordica charantia][more]
XP_038906261.11.98e-12387.0250S ribosomal protein L17, chloroplastic [Benincasa hispida][more]
XP_008442307.15.44e-12186.06PREDICTED: 50S ribosomal protein L17 [Cucumis melo][more]
XP_004137669.11.37e-11985.1050S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti... [more]
XP_022971252.13.93e-11984.2950S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri... [more]
BLAST of MC05g1611 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXR76.21e-145100.0050S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A1S3B6522.63e-12186.0650S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1[more]
A0A0A0L9N96.65e-12085.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1[more]
A0A6J1I1G71.90e-11984.2950S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1GDC06.36e-11883.3350S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of MC05g1611 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G54210.16.2e-7772.12Ribosomal protein L17 family protein [more]
AT5G09770.11.0e-2350.00Ribosomal protein L17 family protein [more]
AT5G64650.15.1e-2349.07Ribosomal protein L17 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10Ribosomal protein L17coord: 83..208
e-value: 8.6E-51
score: 173.2
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 93..208
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 112..208
e-value: 8.2E-35
score: 119.7
IPR000456Ribosomal protein L17TIGRFAMTIGR00059TIGR00059coord: 99..208
e-value: 2.0E-42
score: 142.0
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 44..208
IPR000456Ribosomal protein L17HAMAPMF_01368Ribosomal_L17coord: 97..208
score: 26.097586
NoneNo IPR availablePANTHERPTHR14413:SF23SUBFAMILY NOT NAMEDcoord: 44..208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g1611.1MC05g1611.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome