MC05g0988 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0988
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 11349009 .. 11349392 (+)
RNA-Seq Expression	MC05g0988
Synteny	MC05g0988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTCGAAGAGTGGGAACTCCTCGATTGCAATGAAGACATGGATCAGAAGATAGCTTCCAGTTTAGATCGATCAATTGGCAGAGACGCATTCGATGAACACGAGATCGGTGTGCAAGATGATGAGGACGCCGTTTCACAAGTTTCCGGCGCCATGAAAAAGGACTCGCCTAGGTTTTCGATCGCGGCGGAATCAGATGTGGAGGAGGAGGTAGAAGGCAAGGAGGACGTGAATTCAGGAAAAATGAATACGGCGATGGAGAAGAGAGGTTTGGCGGTACAAAAATGGGGGAGAGCGGCCATGTGCTCGTTCGGAATTGCTGTGGCCGCTACAATTTGCAGTGTGTTATTGGGAAGCCATGGGCACCAAGGTGGGGGAAGC

mRNA sequence

ATGGGTCTCGAAGAGTGGGAACTCCTCGATTGCAATGAAGACATGGATCAGAAGATAGCTTCCAGTTTAGATCGATCAATTGGCAGAGACGCATTCGATGAACACGAGATCGGTGTGCAAGATGATGAGGACGCCGTTTCACAAGTTTCCGGCGCCATGAAAAAGGACTCGCCTAGGTTTTCGATCGCGGCGGAATCAGATGTGGAGGAGGAGGTAGAAGGCAAGGAGGACGTGAATTCAGGAAAAATGAATACGGCGATGGAGAAGAGAGGTTTGGCGGTACAAAAATGGGGGAGAGCGGCCATGTGCTCGTTCGGAATTGCTGTGGCCGCTACAATTTGCAGTGTGTTATTGGGAAGCCATGGGCACCAAGGTGGGGGAAGC

Coding sequence (CDS)

ATGGGTCTCGAAGAGTGGGAACTCCTCGATTGCAATGAAGACATGGATCAGAAGATAGCTTCCAGTTTAGATCGATCAATTGGCAGAGACGCATTCGATGAACACGAGATCGGTGTGCAAGATGATGAGGACGCCGTTTCACAAGTTTCCGGCGCCATGAAAAAGGACTCGCCTAGGTTTTCGATCGCGGCGGAATCAGATGTGGAGGAGGAGGTAGAAGGCAAGGAGGACGTGAATTCAGGAAAAATGAATACGGCGATGGAGAAGAGAGGTTTGGCGGTACAAAAATGGGGGAGAGCGGCCATGTGCTCGTTCGGAATTGCTGTGGCCGCTACAATTTGCAGTGTGTTATTGGGAAGCCATGGGCACCAAGGTGGGGGAAGC

Protein sequence

MGLEEWELLDCNEDMDQKIASSLDRSIGRDAFDEHEIGVQDDEDAVSQVSGAMKKDSPRFSIAAESDVEEEVEGKEDVNSGKMNTAMEKRGLAVQKWGRAAMCSFGIAVAATICSVLLGSHGHQGGGS

Homology

[Close]

BLAST of MC05g0988 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.45e-17
Identity = 59/128 (46.09%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 1   MGLEEWELLDCNEDMDQKIASSLDRSIGRDAFDEHEIGVQDDEDAVSQVSGAMKKDSPRF 60
           MGL++WELLDC+ED DQ+ +              HE  V   +  +      M+      
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRP------------HENVVISGQKLIGDTKNEME------ 60

Query: 61  SIAAESDVEEEVEGKEDVNS-GKMNTAMEKRGLAVQKWGRAAMCSFGIAVAATICSVLLG 120
              AE DVEEE    E V+S G M+ AMEKR    ++WGR  +CSFGIAVAATICSVLLG
Sbjct: 61  -AVAEFDVEEE----EKVDSRGGMDMAMEKR----KQWGRTVVCSFGIAVAATICSVLLG 101

Query: 121 SHGHQGGG 127
           SH H  GG
Sbjct: 121 SHSHHHGG 101

[Close]

BLAST of MC05g0988 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.61e-13
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MGLEEWELLDCNEDMDQKIASSLDRSIGRDAFDEHEIGVQDDEDAVSQVSGAMKKDSPRF 60
           MGL++WELLDC+ED ++K                HE  V   +  ++     ++      
Sbjct: 1   MGLDDWELLDCHEDREEK--------------SRHENEVISGQKLIADTKKELE------ 60

Query: 61  SIAAESDVEEEVEGKEDVNSGKMNTAMEKRGLAVQKWGRAAMCSFGIAVAATICSVLLGS 120
            I AE +VEEE   KE+   G M+ A EK+    ++ GRA +CSFGIAVAATICSVLLGS
Sbjct: 61  -IVAEFEVEEEE--KENSRRG-MDMATEKK----KQRGRAVVCSFGIAVAATICSVLLGS 99

Query: 121 HGHQGGG 127
           H H  GG
Sbjct: 121 HSHHHGG 99

[Close]

BLAST of MC05g0988 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.04e-18
Identity = 59/128 (46.09%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 1   MGLEEWELLDCNEDMDQKIASSLDRSIGRDAFDEHEIGVQDDEDAVSQVSGAMKKDSPRF 60
           MGL++WELLDC+ED DQ+ +              HE  V   +  +      M+      
Sbjct: 1   MGLDDWELLDCHEDHDQEKSRP------------HENVVISGQKLIGDTKNEME------ 60

Query: 61  SIAAESDVEEEVEGKEDVNS-GKMNTAMEKRGLAVQKWGRAAMCSFGIAVAATICSVLLG 120
              AE DVEEE    E V+S G M+ AMEKR    ++WGR  +CSFGIAVAATICSVLLG
Sbjct: 61  -AVAEFDVEEE----EKVDSRGGMDMAMEKR----KQWGRTVVCSFGIAVAATICSVLLG 101

Query: 121 SHGHQGGG 127
           SH H  GG
Sbjct: 121 SHSHHHGG 101

[Close]

BLAST of MC05g0988 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.80e-14
Identity = 54/127 (42.52%), Postives = 71/127 (55.91%), Query Frame = 0


Query: 1   MGLEEWELLDCNEDMDQKIASSLDRSIGRDAFDEHEIGVQDDEDAVSQVSGAMKKDSPRF 60
           MGL++WELLDC+ED ++K                HE  V   +  ++     ++      
Sbjct: 1   MGLDDWELLDCHEDREEK--------------SRHENEVISGQKLIADTKKELE------ 60

Query: 61  SIAAESDVEEEVEGKEDVNSGKMNTAMEKRGLAVQKWGRAAMCSFGIAVAATICSVLLGS 120
            I AE +VEEE   KE+   G M+ A EK+    ++ GRA +CSFGIAVAATICSVLLGS
Sbjct: 61  -IVAEFEVEEEE--KENSRRG-MDMATEKK----KQRGRAVVCSFGIAVAATICSVLLGS 99

Query: 121 HGHQGGG 127
           H H  GG
Sbjct: 121 HSHHHGG 99

The following BLAST results are available for this feature:

BLAST of MC05g0988 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g0988 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59752.1	1.45e-17	46.09	hypothetical protein Csa_001232 [Cucumis sativus]	[more]
KAA0057194.1	1.61e-13	42.52	hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876...	[more]

BLAST of MC05g0988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG95	7.04e-18	46.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1	[more]
A0A5D3D5E0	7.80e-14	42.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC05g0988 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0988.1	MC05g0988.1	mRNA