MC05g0795 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0795
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	MC05: 6692243 .. 6692409 (-)
RNA-Seq Expression	MC05g0795
Synteny	MC05g0795

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTACACACAACACCCCTTAGAGGAAGGGTCAAGCAAGGTGGACAACGGGTGAGAGAAATAGAGGTTTGGGCTCTAGAAGAATTTGATGTTGCTCATATTTTGCCTTACTTTATAAATCTGATCATATTAAAGCTCGACAAAAAATACTTGATACTACGATCATT

mRNA sequence

TTGTTACACACAACACCCCTTAGAGGAAGGGTCAAGCAAGGTGGACAACGGGTGAGAGAAATAGAGGTTTGGGCTCTAGAAGAATTTGATGTTGCTCATATTTTGTTACTTTATAAATCTGATCATATTAAAGCTCGACAAAAAATACTTGATACTACGATCATT

Coding sequence (CDS)

TTGTTACACACAACACCCCTTAGAGGAAGGGTCAAGCAAGGTGGACAACGGGTGAGAGAAATAGAGGTTTGGGCTCTAGAAGAATTTGATGTTGCTCATATTTTGTTACTTTATAAATCTGATCATATTAAAGCTCGACAAAAAATACTTGATACTACGATCATT

Protein sequence

LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHILLLYKSDHIKARQKILDTTII

Homology

[Close]

BLAST of MC05g0795 vs. ExPASy Swiss-Prot
Match: P11703 (DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea OX=3562 GN=rpoB PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-15
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHIKARQ++L TTII
Sbjct: 968  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTII 1025

[Close]

BLAST of MC05g0795 vs. ExPASy Swiss-Prot
Match: Q589C0 (DNA-directed RNA polymerase subunit beta OS=Silene latifolia OX=37657 GN=rpoB PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-14
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHIKARQ +L TTII
Sbjct: 968  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQDVLGTTII 1025

[Close]

BLAST of MC05g0795 vs. ExPASy Swiss-Prot
Match: A9LYH7 (DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-14
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 981  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 1038

[Close]

BLAST of MC05g0795 vs. ExPASy Swiss-Prot
Match: Q3V542 (DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-14
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 969  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 1026

[Close]

BLAST of MC05g0795 vs. ExPASy Swiss-Prot
Match: Q5QA72 (DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-14
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 969  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 1026

[Close]

BLAST of MC05g0795 vs. NCBI nr
Match: BBN70082.1 (hypothetical protein Prudu_1405S000400 [Prunus dulcis])

HSP 1 Score: 77.8 bits (190), Expect = 1.06e-16
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 16 LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 73

[Close]

BLAST of MC05g0795 vs. NCBI nr
Match: NLZ73073.1 (DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium])

HSP 1 Score: 77.4 bits (189), Expect = 1.98e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Sbjct: 27 LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIV 84

[Close]

BLAST of MC05g0795 vs. NCBI nr
Match: PHT86502.1 (hypothetical protein T459_08608 [Capsicum annuum])

HSP 1 Score: 76.3 bits (186), Expect = 5.09e-16
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQ+V EIEVWALE F++AHIL   L YKSDHI+A Q++L TTII
Sbjct: 19 LVTQQPLRGRAKQGGQQVGEIEVWALEGFEIAHILQKMLTYKSDHIRAHQEVLGTTII 76

[Close]

BLAST of MC05g0795 vs. NCBI nr
Match: WP_199287517.1 (hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-directed RNA polymerase subunit beta, partial [Photobacterium chitinilyticum])

HSP 1 Score: 77.0 bits (188), Expect = 5.21e-16
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
           L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 88  LVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 145

[Close]

BLAST of MC05g0795 vs. NCBI nr
Match: VVW90808.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 77.4 bits (189), Expect = 5.38e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
           L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Sbjct: 71  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIV 128

[Close]

BLAST of MC05g0795 vs. ExPASy TrEMBL
Match: A0A5H2XTM0 (DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=Prudu_1405S000400 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.11e-17
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 16 LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 73

[Close]

BLAST of MC05g0795 vs. ExPASy TrEMBL
Match: A0A7X8ZSZ9 (DNA-directed RNA polymerase subunit beta OS=Bacteroidales bacterium OX=2030927 GN=GX905_04560 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.56e-17
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Sbjct: 27 LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIV 84

[Close]

BLAST of MC05g0795 vs. ExPASy TrEMBL
Match: A0A2G2ZWY2 (DNA-directed RNA polymerase OS=Capsicum annuum OX=4072 GN=T459_08608 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.46e-16
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
          L+   PLRGR KQGGQ+V EIEVWALE F++AHIL   L YKSDHI+A Q++L TTII
Sbjct: 19 LVTQQPLRGRAKQGGQQVGEIEVWALEGFEIAHILQKMLTYKSDHIRAHQEVLGTTII 76

[Close]

BLAST of MC05g0795 vs. ExPASy TrEMBL
Match: A0A444JHR1 (DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=2485123 GN=EDI28_26660 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.52e-16
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
           L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 88  LVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 145

[Close]

BLAST of MC05g0795 vs. ExPASy TrEMBL
Match: A0A5K1HTK9 (DNA-directed RNA polymerase (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30763 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.60e-16
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 55
           L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTI+
Sbjct: 71  LVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTIV 128

[Close]

BLAST of MC05g0795 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 78.2 bits (191), Expect = 2.3e-15
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1    LLHTTPLRGRVKQGGQRVREIEVWALEEFDVAHIL---LLYKSDHIKARQKILDTTII 56
            L+   PLRGR KQGGQRV E+EVWALE F VAHIL   L YKSDHI+ARQ++L TTII
Sbjct: 970  LVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVLGTTII 1027

The following BLAST results are available for this feature:

BLAST of MC05g0795 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11703	8.6e-15	72.41	DNA-directed RNA polymerase subunit beta OS=Spinacia oleracea OX=3562 GN=rpoB PE...	[more]
Q589C0	1.5e-14	72.41	DNA-directed RNA polymerase subunit beta OS=Silene latifolia OX=37657 GN=rpoB PE...	[more]
A9LYH7	1.9e-14	70.69	DNA-directed RNA polymerase subunit beta OS=Acorus americanus OX=263995 GN=rpoB ...	[more]
Q3V542	1.9e-14	70.69	DNA-directed RNA polymerase subunit beta OS=Acorus calamus OX=4465 GN=rpoB PE=3 ...	[more]
Q5QA72	1.9e-14	70.69	DNA-directed RNA polymerase subunit beta OS=Acorus gramineus OX=55184 GN=rpoB PE...	[more]

BLAST of MC05g0795 vs. NCBI nr


Match Name	E-value	Identity	Description
BBN70082.1	1.06e-16	70.69	hypothetical protein Prudu_1405S000400 [Prunus dulcis]	[more]
NLZ73073.1	1.98e-16	68.97	DNA-directed RNA polymerase subunit beta [Bacteroidales bacterium]	[more]
PHT86502.1	5.09e-16	67.24	hypothetical protein T459_08608 [Capsicum annuum]	[more]
WP_199287517.1	5.21e-16	70.69	hypothetical protein, partial [Photobacterium chitinilyticum] >RWX52626.1 DNA-di...	[more]
VVW90808.1	5.38e-16	68.97	unnamed protein product, partial [Nymphaea colorata]	[more]

BLAST of MC05g0795 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5H2XTM0	5.11e-17	70.69	DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=Prudu_1405S000400 PE=3 S...	[more]
A0A7X8ZSZ9	9.56e-17	68.97	DNA-directed RNA polymerase subunit beta OS=Bacteroidales bacterium OX=2030927 G...	[more]
A0A2G2ZWY2	2.46e-16	67.24	DNA-directed RNA polymerase OS=Capsicum annuum OX=4072 GN=T459_08608 PE=3 SV=1	[more]
A0A444JHR1	2.52e-16	70.69	DNA-directed RNA polymerase (Fragment) OS=Photobacterium chitinilyticum OX=24851...	[more]
A0A5K1HTK9	2.60e-16	68.97	DNA-directed RNA polymerase (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOC...	[more]

BLAST of MC05g0795 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	2.3e-15	70.69	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 5..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC05g0795.1	MC05g0795.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding