MC05g0722 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0722
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description50S ribosomal protein L18
LocationMC05: 5723447 .. 5726959 (+)
RNA-Seq ExpressionMC05g0722
SyntenyMC05g0722
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACTATTTACCTGAACGTAGCATAATTATCCTATATCTCAAATTTCAATCCTCACCTCAATTGTGCTAAAAGGAAAAAAAAGAAAAAAAAAAACCAAAAATTAAAACTTGTTTGAAATATAACGTCATATAGAAAAAGGCTCTGCACAAAAAAAGGGATAAGGTTCAAATAGAAGAAGAAACGAACCAGGCGAGCAACAGAAGAAGAAGAGGAAGAGAGAGCCAGAGAGAGAATGTCTGCGGCCATTTCTCCATGTTCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATCCACAGAAGCTTCGCAATCGTCCTCAGTTCAATTTTCCGGTACCTACTTCAAGTTCCGGCCGCCACTCTCTTCTTGTCGAAGCCAAGGCTACCACCAGACGAGAGGATCGGGCGGCTCGCCATTCTCGCATCAGGAAGAAGGTAAATCACTCACTGCATTTCCGGTTTCCGGCCTTCTCCTACTGCGCCTACTTTTTTTTTCCCGATAATTGGACGCATTTCTTGTCTGACATTGTTCTATGAGAGCTTCTTGTTGTTGTGCGGCTAAATATTTATCATCGTAGGTTATTTTTTCTAATTTTACCTGAAAATTTTTTAGAGATTCGCCTGAGGTGGAGGTGTGTTTTCTGAGTTTGATTTGTTGTTAACTTTGAATACGAAATCTTATTCGTATCCGCTTAGGTTGAAATTTCCATGACCTGTCGGGAATTACTCGGAGCTTCTCACTTCTTGACATGAAAATTTCACGATTTAGACTTGGAATTGGTCGATATTTGTTTGCGACACAATTGTTAGTTTACTTCCGTTTGCATATTGTTTCACTCCAGATAACTATTTATTGTGAACTTTCGAACGAATTATTTGGGCCTCAGATGACTTGAAAGTAGGTTTATTTATTGAAGAAACCAGAATTCCTTGGAATATGTAGCTCGTACAAAGAATACACTGGCAACTGGAGGTTGGAGCTAAAACACAAAACAAAATAAGAAAGATATCCCGCATATTACTTATTTTTCTGTTAAGAAACTAGGCTCGTATGTGGACCACAACTGATTACAATAGCAATGAATGGATGGTAATTGATCCCCAAATCTGCAGGCCAAAGATGTGAAAAGAACATTCGCCTGTTGTCAGTATTGAGAAAAGTACAATTACTGTATTTTACAATCGGAAGCCATAGAGGACACTATTCTACAAATGAATTCCTCCTTTCCTTAATCCATTTGATGCTCTTCTATTTCTTTGAATCAGATGTTCCAGAAATGGGACGGGGTAGCATTGTACCATAGCACTTCAGTGACAATAAAAGAGTGACAGGGTAAGGCTTAATGGAGAAAATACTAAATGCTGGATGAATGCATCCAGAACAGCACAAGTGTTGAAATGTTTCCCTTGTACTACTACCAAGGTGCCCAATCATGGGTTACGAAAGGAACTATATTCTGTGTACCATTTTTATCGTGACCCACCCATGCACGCAACATGTGCCAGGTGCATGCATCAATTGGATGAGTATAAAATGAAAATGTTCCTTATCCATAGAAATACGCATAAAAAACTATCCAAGATAACTAAAGGAGATTCAAAGGGAAGATAAAGTGCAGTTAGTCGGCATCTACAAGGAGATTAGCTTGCATGCAAGCACTGGGACTTCCAAGACTCGTGGAGATTGGATGAGATTTAGGAGGTCTAAATTTAAATATTCAAGCTAGTGGATAGAGTTTATTCACACTTATTTTCTAAGTAGCATGAATTTGGTTAAGAACTTTGAGAGTTCTACATAAAGAATGTCTTGGTATTAAATGGGGGTTAGAGAATAAGGGAGCAGATTTGGTGAGGCAATTATTGTCGTTGGGGGAGCTTGTGAGATTGACACTTATCTTTAATTATTATTATTGATATATAAGGGTTGTGGGTTTGGATTTTGATTACAGCTTTATTGCACATTTACTTTACCTTTGGTTGTGGAATCTCTGCCCAAAATACTACTCATCCTTGACCTGCATATGACACTTGGGAAGGTGACATTTTCAATCCATGCCACAAGATCTGTCTCCAACTCGTAAATTTTGAACTAGACTGGTTAAATAAAGATCTAGTTTTCTTAATGGGCACTATACACTACTGCTCCAGATCTGGAGATCTACGGATAATTCTCCTTCTATTTCAATTTTTTGAACGTATTTGTACACAGGAATCAATTGAATCTTTTTAATCTTCATTTTTTATACACCAGGCCTCAGGGTATGGTCAATGAAAAATCTGGAAGACTGCTTTAGAACAGCATTGAGTTCACAATTGTTATCTTTATACTAGCCAATTGATTCTTGCTGGTACAGATATAGATAATAAAGCACAGTTCACCTGTACAATCATCTTCTTGTGCCTTAGGTTGAAGGAACACCAGAGAGGCCAAGGTTGTCTGTATACCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGCTTCAACAATGCAGAAGTCAATCTCTGAGGGATTAGACTACAGTTCTGGCCCTACCATTGTGAGTTCACTTTTCTTAAGAATTATTTTATTGATCTACTATATCCTTCCCTTTCTAAACTTAGTTGCATTGGTTTGATGACTTTGTATATCTTACCTCTTCAAATAAGAAACAGGGCATCCATTCAAATCACCCACTAAATTGGTTAGATATTGTGAGAGGTTTTGTTTATGAACTTAAATACAGAAATTAAATAACATAAGAAAGGAAAAACAAAAGTATAGTAAGAGCCAAGTGAAATAGCCGTAAAATGTCTCTGCATGAGAAATGAGTTCAGCTATCATACTCGCTTGAACATATATGATCTATAGGTTCCACCTCTGTGTCCTTGAGTTCTAAAAAGCTTAGTTATGGTACATAGATTTAGTCCCTAAAGAGTTCCAATTACGTTTATACACTTTAAACTGTGATTCTAAGCATTCACTCAAATAATTATGTGACACAATCATTGACCAATTTGGTATGTCACATGATAATGTAGCTAATGATATTAACGACAAAAGACTATATAGAATTGAGATTAAATTCATAACTTAACCTAAGCAGAAACCTTATTATATGTGTGGATGATATGGTACAGGAAGTAGCAAAGAAGGTGGGAGAAGTGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGGTATCCATATCATGGGCGTGTGGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTAGCCAAAAAAAAAGTAACCCCCTTTTGTTTTTTCTATTCTCTGTTGTATGCTCTGCTACAACATTGCATATCAGATGGGCATAATCATATTATTTTCTGTTGATTAGATGGGAGCTGTGGTTGTTTAACTTCAAGTTTAAGAGGGAAATTATTTATGGGAAATCAGTGGTCATATGGGACATTAAAGATAGCAAATGTATGTCCAACCAAGAGGA

mRNA sequence

AAAAAACTATTTACCTGAACGTAGCATAATTATCCTATATCTCAAATTTCAATCCTCACCTCAATTGTGCTAAAAGGAAAAAAAAGAAAAAAAAAAACCAAAAATTAAAACTTGTTTGAAATATAACGTCATATAGAAAAAGGCTCTGCACAAAAAAAGGGATAAGGTTCAAATAGAAGAAGAAACGAACCAGGCGAGCAACAGAAGAAGAAGAGGAAGAGAGAGCCAGAGAGAGAATGTCTGCGGCCATTTCTCCATGTTCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATCCACAGAAGCTTCGCAATCGTCCTCAGTTCAATTTTCCGGTACCTACTTCAAGTTCCGGCCGCCACTCTCTTCTTGTCGAAGCCAAGGCTACCACCAGACGAGAGGATCGGGCGGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACACCAGAGAGGCCAAGGTTGTCTGTATACCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGCTTCAACAATGCAGAAGTCAATCTCTGAGGGATTAGACTACAGTTCTGGCCCTACCATTGAAGTAGCAAAGAAGGTGGGAGAAGTGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGGTATCCATATCATGGGCGTGTGGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTAGCCAAAAAAAAAGTAACCCCCTTTTGTTTTTTCTATTCTCTGTTGTATGCTCTGCTACAACATTGCATATCAGATGGGCATAATCATATTATTTTCTGTTGATTAGATGGGAGCTGTGGTTGTTTAACTTCAAGTTTAAGAGGGAAATTATTTATGGGAAATCAGTGGTCATATGGGACATTAAAGATAGCAAATGTATGTCCAACCAAGAGGA

Coding sequence (CDS)

ATGTCTGCGGCCATTTCTCCATGTTCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATCCACAGAAGCTTCGCAATCGTCCTCAGTTCAATTTTCCGGTACCTACTTCAAGTTCCGGCCGCCACTCTCTTCTTGTCGAAGCCAAGGCTACCACCAGACGAGAGGATCGGGCGGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACACCAGAGAGGCCAAGGTTGTCTGTATACCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGCTTCAACAATGCAGAAGTCAATCTCTGAGGGATTAGACTACAGTTCTGGCCCTACCATTGAAGTAGCAAAGAAGGTGGGAGAAGTGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGGTATCCATATCATGGGCGTGTGGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTAG

Protein sequence

MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAARHSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Homology
[Close]
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 221.9 bits (564), Expect = 5.7e-57
Identity = 122/171 (71.35%), Postives = 138/171 (80.70%), Query Frame = 0 

Query: 3   AAISPCSFLGSSFLSVSYP--QKLRNRPQF-NFPVPTSSSGRHSLLVEAKATTRREDRAA 62
           AA +  SF  S+  S S    Q+L   P+F NF   T        L++AKA TRREDR A
Sbjct: 2   AAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDRTA 61

Query: 63  RHSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGP 122
           RH RIRKKVEGTPERPRL V+RSNKHLYVQVIDD+KMHTLAAASTMQK+ISE +DYS+GP
Sbjct: 62  RHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGP 121

Query: 123 TIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           T+EVA+K+GE+IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 122 TVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.2e-56
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = 0 

Query: 24  LRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAARHSRIRKKVEGTPERPRLSVYRSN 83
           L++R  F  P  +SS    S++VEAK  T  EDR ARHSRIRKKV GT ERPRL V+RSN
Sbjct: 24  LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSN 83

Query: 84  KHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPTIEVAKKVGEVIAKSCLEKGITKV 143
           KHLYVQVIDD+KMHTLA+AST QK ISE  DY+SGPTIEVAKKVGEVIAKSCLEKGITKV
Sbjct: 84  KHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV 143

Query: 144 AFDRGGYPYHGRVEALADAAREHGLQF 171
           AFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 144 AFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.9e-47
Identity = 97/145 (66.90%), Postives = 118/145 (81.38%), Query Frame = 0 

Query: 28  PQFNFPVPTSSSGRHSLLVEA--KATTRREDRAARHSRIRKKVEGTPERPRLSVYRSNKH 87
           P  + P P+ +  R SL+V A  K +T + DR ARH R+RKKV GT ERPRLSV+RSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPTIEVAKKVGEVIAKSCLEKGITKVAF 147
           LY QVIDD+K  TL +ASTM KS+S+ L+YS+GPT+EVA+K+GEVIAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

[Close]
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-33
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSV+RSNKH+Y Q+IDD+K  T+ +AST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  S   IE AKKVGE++AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-33
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSV+RSNKH+Y Q+IDD+K  T+ +AST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  S   IE AKKVGE++AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]
BLAST of MC05g0722 vs. NCBI nr
Match: XP_022137866.1 (50S ribosomal protein L18, chloroplastic [Momordica charantia])

HSP 1 Score: 332 bits (852), Expect = 9.06e-115
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK05105.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 295 bits (755), Expect = 5.58e-100
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++  +PCSFLG+SFLSVSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 293 bits (751), Expect = 2.27e-99
Identity = 149/170 (87.65%), Postives = 159/170 (93.53%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++A +P SFLG+SFLSVSY Q LRNRP  +FP  TSSSGRHSL+VEA+ATTRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. NCBI nr
Match: XP_004147640.1 (50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_010063 [Cucumis sativus])

HSP 1 Score: 288 bits (737), Expect = 3.09e-97
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++  +PCSFL +SFL+VSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287 bits (735), Expect = 6.23e-97
Identity = 148/170 (87.06%), Postives = 155/170 (91.18%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           MS+AI+P SFLG+S L VSY Q LR  P  NFP  TSSSGRHSL++EAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDY+SGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match: A0A6J1C7Y4 (50S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009192 PE=3 SV=1)

HSP 1 Score: 332 bits (852), Expect = 4.39e-115
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 295 bits (755), Expect = 2.70e-100
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++  +PCSFLG+SFLSVSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 295 bits (755), Expect = 2.70e-100
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++  +PCSFLG+SFLSVSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.50e-97
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           M++  +PCSFL +SFL+VSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           IEVAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match: A0A6J1F5G8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442526 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 3.52e-96
Identity = 147/168 (87.50%), Postives = 153/168 (91.07%), Query Frame = 0 

Query: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60
           MS+AI+P SFLGSS L VSY Q LR  P  NFP   SSSGRHSL++EAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDY+SGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168
           IEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168

[Close]
BLAST of MC05g0722 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 218.0 bits (554), Expect = 5.8e-57
Identity = 114/147 (77.55%), Postives = 124/147 (84.35%), Query Frame = 0 

Query: 24  LRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAARHSRIRKKVEGTPERPRLSVYRSN 83
           L++R  F  P  +SS    S++VEAK  T  EDR ARHSRIRKKV GT ERPRL V+RSN
Sbjct: 24  LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSN 83

Query: 84  KHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPTIEVAKKVGEVIAKSCLEKGITKV 143
           KHLYVQVIDD+KMHTLA+AST QK ISE  DY+SGPTIEVAKKVGEVIAKSCLEKGITKV
Sbjct: 84  KHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKV 143

Query: 144 AFDRGGYPYHGRVEALADAAREHGLQF 171
           AFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 144 AFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]
BLAST of MC05g0722 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 0 

Query: 23  KLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAARHSRIRKKVEGTPERPRLSVYRS 82
           +L+  PQF   + T S  +   ++EA+  TR E    R+ R RKK  GT  +PRLSV+ S
Sbjct: 21  RLKPYPQFPIRITTMSVVK-PFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCS 80

Query: 83  NKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPTIEVAKKVGEVIAKSCLEKGITK 142
           +K LY  ++DD     L  AST+QKSI      +    IE AK+VGE + K+ ++  I +
Sbjct: 81  DKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINE 140

Query: 143 V-AFDRGGYPYHGRVEALADAAREHG 168
           + ++DR G     R++A   A  +HG
Sbjct: 141 ISSYDRNGNKRGERMQAFEIAIAQHG 162

[Close]
BLAST of MC05g0722 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-10
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 117 SGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHG 155
           +G TIE+AKKVGEVI KSC+E GITKVAFDR  Y YHG
Sbjct: 10  TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:
BLAST of MC05g0722 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821955.7e-5771.3550S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P... [more]
Q9SX688.2e-5677.5550S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
Q8SAY06.9e-4766.9050S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
Q5L3S32.0e-3365.2550S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ... [more]
P094157.4e-3364.4150S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1... [more]
BLAST of MC05g0722 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137866.19.06e-115100.0050S ribosomal protein L18, chloroplastic [Momordica charantia][more]
XP_008439021.15.58e-10087.65PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1... [more]
XP_038885362.12.27e-9987.6550S ribosomal protein L18, chloroplastic-like [Benincasa hispida][more]
XP_004147640.13.09e-9785.2950S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypotheti... [more]
XP_023538937.16.23e-9787.0650S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of MC05g0722 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7Y44.39e-115100.0050S ribosomal protein L18, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A5A7UA632.70e-10087.6550S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AXQ62.70e-10087.6550S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939... [more]
A0A0A0L9A41.50e-9785.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1[more]
A0A6J1F5G83.52e-9687.5050S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of MC05g0722 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48350.15.8e-5777.55Ribosomal L18p/L5e family protein [more]
AT1G14205.11.9e-1536.99Ribosomal L18p/L5e family protein [more]
AT3G17626.15.3e-1076.32structural constituent of ribosome [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004389Ribosomal protein L18, bacterial-typeTIGRFAMTIGR00060TIGR00060coord: 54..170
e-value: 3.1E-42
score: 141.5
IPR004389Ribosomal protein L18, bacterial-typeHAMAPMF_01337_BRibosomal_L18_Bcoord: 52..170
score: 28.088135
NoneNo IPR availableGENE3D3.30.420.100coord: 51..170
e-value: 4.3E-47
score: 161.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..73
NoneNo IPR availablePANTHERPTHR12899:SF339S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 35..170
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 64..168
e-value: 1.04915E-46
score: 146.146
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 53..168
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 52..170
e-value: 1.5E-46
score: 157.4
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 35..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0722.1MC05g0722.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome