MC05g0553 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC05g0553
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionCytochrome c oxidase subunit 1
LocationMC05: 4211321 .. 4211425 (+)
RNA-Seq ExpressionMC05g0553
SyntenyMC05g0553
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGGTC

mRNA sequence

GCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGGTC

Coding sequence (CDS)

GCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGGTC

Protein sequence

ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV
Homology
[Close]
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match: P68540 (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

[Close]
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match: P60620 (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

[Close]
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match: P24794 (Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

[Close]
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match: P08742 (Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

[Close]
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match: P08743 (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

[Close]
BLAST of MC05g0553 vs. NCBI nr
Match: WP_189895428.1 (cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces canarius])

HSP 1 Score: 71.2 bits (173), Expect = 5.74e-15
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 76

[Close]
BLAST of MC05g0553 vs. NCBI nr
Match: WP_190167551.1 (cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces malachitofuscus])

HSP 1 Score: 70.1 bits (170), Expect = 1.64e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          +RPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 43 SRPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 76

[Close]
BLAST of MC05g0553 vs. NCBI nr
Match: WP_190133636.1 (cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces gardneri])

HSP 1 Score: 69.7 bits (169), Expect = 2.28e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMP 33
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMP
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMP 75

[Close]
BLAST of MC05g0553 vs. NCBI nr
Match: AFY03536.1 (cytochrome c oxidase subunit 1, partial [Lagenaria siceraria])

HSP 1 Score: 71.2 bits (173), Expect = 3.30e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 4  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 37

[Close]
BLAST of MC05g0553 vs. NCBI nr
Match: AUD10199.1 (cytochrome c oxidase subunit 1, partial [Nepenthes khasiana])

HSP 1 Score: 71.2 bits (173), Expect = 4.96e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 20 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 53

[Close]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match: K7YUF6 (Cytochrome c oxidase subunit 1 (Fragment) OS=Lagenaria siceraria OX=3668 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.60e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 4  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 37

[Close]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match: A0A3S6Q7S9 (Cytochrome c oxidase subunit 1 (Fragment) OS=Nepenthes khasiana OX=122310 GN=COI PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.40e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 20 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 53

[Close]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match: E1CBG1 (Cytochrome c oxidase subunit 1 (Fragment) OS=Cycas taitungensis OX=54799 GN=cox1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.49e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          A+PGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 43 AQPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 76

[Close]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match: A0A2K8ZEU4 (Cytochrome c oxidase subunit 1 (Fragment) OS=Utricularia bifida OX=1398144 GN=COI PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.55e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 21 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 54

[Close]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match: A0A2K8ZCR1 (Cytochrome c oxidase subunit 1 (Fragment) OS=Drosera burmannii OX=4365 GN=COI PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.60e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 34
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA
Sbjct: 20 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA 53

[Close]
BLAST of MC05g0553 vs. TAIR 10
Match: ATMG01360.1 (cytochrome oxidase )

HSP 1 Score: 70.5 bits (171), Expect = 3.1e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0 

Query: 1  ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAV 36
          ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPA+
Sbjct: 43 ARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAM 77

The following BLAST results are available for this feature:
BLAST of MC05g0553 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P685404.3e-1297.14Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1[more]
P606204.3e-1297.14Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1[more]
P247944.3e-1297.14Cytochrome c oxidase subunit 1 OS=Beta vulgaris OX=161934 GN=COX1 PE=3 SV=2[more]
P087424.3e-1297.14Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2[more]
P087434.3e-1297.14Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2[more]
BLAST of MC05g0553 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_189895428.15.74e-15100.00cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces canarius][more]
WP_190167551.11.64e-1497.06cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces malachitofuscus][more]
WP_190133636.12.28e-14100.00cbb3-type cytochrome c oxidase subunit I, partial [Streptomyces gardneri][more]
AFY03536.13.30e-14100.00cytochrome c oxidase subunit 1, partial [Lagenaria siceraria][more]
AUD10199.14.96e-14100.00cytochrome c oxidase subunit 1, partial [Nepenthes khasiana][more]
BLAST of MC05g0553 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
K7YUF61.60e-14100.00Cytochrome c oxidase subunit 1 (Fragment) OS=Lagenaria siceraria OX=3668 PE=3 SV... [more]
A0A3S6Q7S92.40e-14100.00Cytochrome c oxidase subunit 1 (Fragment) OS=Nepenthes khasiana OX=122310 GN=COI... [more]
E1CBG12.49e-1497.06Cytochrome c oxidase subunit 1 (Fragment) OS=Cycas taitungensis OX=54799 GN=cox1... [more]
A0A2K8ZEU42.55e-14100.00Cytochrome c oxidase subunit 1 (Fragment) OS=Utricularia bifida OX=1398144 GN=CO... [more]
A0A2K8ZCR12.60e-14100.00Cytochrome c oxidase subunit 1 (Fragment) OS=Drosera burmannii OX=4365 GN=COI PE... [more]
BLAST of MC05g0553 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG01360.13.1e-1397.14cytochrome oxidase [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 1..35
e-value: 1.2E-8
score: 35.7
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 8..35
NoneNo IPR availablePANTHERPTHR10422:SF39CYTOCHROME C OXIDASE SUBUNIT 1-RELATEDcoord: 1..34
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC05g0553.1MC05g0553.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0009060 aerobic respiration
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0070469 respirasome
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding