MC04g0405 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0405
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 3233060 .. 3233205 (+)
RNA-Seq Expression	MC04g0405
Synteny	MC04g0405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACCATATAGGGTAAAGTCATTTTCTCTCGTTGTCATTATTTTATTTTAGATGCATTGGATTACTTGTCTCCCAGATACCTTAACAAAACTCTTTTAGAACTTGCAAAGCTTTTTGATGGTGCTGTTATTTTTGTCGGTAAGCCC

mRNA sequence

CTACCATATAGGGTAAAGTCATTTTCTCTCGTTGTCATTATTTTAGATGCATTGGATTACTTGTCTCCCAGATACCTTAACAAAACTCTTTTAGAACTTGCAAAGCTTTTTGATGGTGCTGTTATTTTTGTCGGTAAGCCC

Coding sequence (CDS)

CTACCATATAGGGTAAAGTCATTTTCTCTCGTTGTCATTATTTTAGATGCATTGGATTACTTGTCTCCCAGATACCTTAACAAAACTCTTTTAGAACTTGCAAAGCTTTTTGATGGTGCTGTTATTTTTGTCGGTAAGCCC

Protein sequence

LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLFDGAVIFVGKP

Homology

[Close]

BLAST of MC04g0405 vs. ExPASy Swiss-Prot
Match: Q9M2Y6 (Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-09
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 48
           LPYR KSFSL VI+ DALDYLSP+YLNKT+ ELA++  DG V+F G P
Sbjct: 149 LPYRAKSFSL-VIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLP 195

[Close]

BLAST of MC04g0405 vs. ExPASy Swiss-Prot
Match: Q0WPN7 (Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-09
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 48
           LPYR KSFSL VI+ DALDYLSPRYLNKT+ ELA++  DG V+  G P
Sbjct: 146 LPYRSKSFSL-VIVSDALDYLSPRYLNKTVPELARVASDGVVLLAGNP 192

[Close]

BLAST of MC04g0405 vs. NCBI nr
Match: MBA0760954.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 67.4 bits (163), Expect = 1.74e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPYR KSFSL VI+ DALDYLSP+YLNKTLLELA++  DG +IF G P
Sbjct: 59  LPYRPKSFSL-VIVSDALDYLSPKYLNKTLLELARVASDGLIIFAGTP 105

[Close]

BLAST of MC04g0405 vs. NCBI nr
Match: KAE8671485.1 (Pentatricopeptide repeat (PPR) superfamily protein [Hibiscus syriacus])

HSP 1 Score: 65.5 bits (158), Expect = 2.08e-12
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
          LPYR KSFSL VI+ DALDYLSP+YLNKTL ELA++  DG VIF G P
Sbjct: 25 LPYRAKSFSL-VIVSDALDYLSPKYLNKTLPELARVASDGLVIFAGYP 71

[Close]

BLAST of MC04g0405 vs. NCBI nr
Match: MBA0760953.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 67.4 bits (163), Expect = 2.89e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPYR KSFSL VI+ DALDYLSP+YLNKTLLELA++  DG +IF G P
Sbjct: 59  LPYRPKSFSL-VIVSDALDYLSPKYLNKTLLELARVASDGLIIFAGTP 105

[Close]

BLAST of MC04g0405 vs. NCBI nr
Match: XP_024923413.1 (uncharacterized protein At3g49720-like, partial [Ziziphus jujuba])

HSP 1 Score: 67.0 bits (162), Expect = 5.82e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 47
           LPYR KSFSL VI+LDAL+YLSPRYLNKTL +LA++  DG VIF G P
Sbjct: 80  LPYRPKSFSL-VIVLDALEYLSPRYLNKTLPDLARVSIDGLVIFTGSP 126

[Close]

BLAST of MC04g0405 vs. NCBI nr
Match: TYG75493.1 (hypothetical protein ES288_D03G035800v1 [Gossypium darwinii])

HSP 1 Score: 66.2 bits (160), Expect = 8.09e-12
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPY+ KSFSL VI+ DALDYLSP+YLNKTLLELA++  DG +IF G P
Sbjct: 59  LPYKPKSFSL-VIVSDALDYLSPKYLNKTLLELARVASDGLIIFAGTP 105

[Close]

BLAST of MC04g0405 vs. ExPASy TrEMBL
Match: A0A7J9DK63 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023664 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.45e-13
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPYR KSFSL VI+ DALDYLSP+YLNKTLLELA++  DG +IF G P
Sbjct: 59  LPYRPKSFSL-VIVSDALDYLSPKYLNKTLLELARVASDGLIIFAGTP 105

[Close]

BLAST of MC04g0405 vs. ExPASy TrEMBL
Match: A0A6A2XX73 (Pentatricopeptide repeat (PPR) superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111947pilonHSYRG00093 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.00e-12
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
          LPYR KSFSL VI+ DALDYLSP+YLNKTL ELA++  DG VIF G P
Sbjct: 25 LPYRAKSFSL-VIVSDALDYLSPKYLNKTLPELARVASDGLVIFAGYP 71

[Close]

BLAST of MC04g0405 vs. ExPASy TrEMBL
Match: A0A7J9DJQ7 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023664 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.40e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPYR KSFSL VI+ DALDYLSP+YLNKTLLELA++  DG +IF G P
Sbjct: 59  LPYRPKSFSL-VIVSDALDYLSPKYLNKTLLELARVASDGLIIFAGTP 105

[Close]

BLAST of MC04g0405 vs. ExPASy TrEMBL
Match: A0A2P2JEP8 (Uncharacterized protein At3g49720-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.40e-12
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKLF-DGAVIFVGKP 47
           LPYR KSFSL +I+ DALDYLSPRYLNKTL ELA++  DG VIF G P
Sbjct: 59  LPYRAKSFSL-IIVSDALDYLSPRYLNKTLPELARVSADGVVIFTGNP 105

[Close]

BLAST of MC04g0405 vs. ExPASy TrEMBL
Match: A0A6P6FNU3 (uncharacterized protein At3g49720-like OS=Ziziphus jujuba OX=326968 GN=LOC112489316 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.82e-12
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 47
           LPYR KSFSL VI+LDAL+YLSPRYLNKTL +LA++  DG VIF G P
Sbjct: 80  LPYRPKSFSL-VIVLDALEYLSPRYLNKTLPDLARVSIDGLVIFTGSP 126

[Close]

BLAST of MC04g0405 vs. TAIR 10
Match: AT3G49720.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-10
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 48
           LPYR KSFSL VI+ DALDYLSP+YLNKT+ ELA++  DG V+F G P
Sbjct: 149 LPYRAKSFSL-VIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLP 195

[Close]

BLAST of MC04g0405 vs. TAIR 10
Match: AT3G49720.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-10
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 48
           LPYR KSFSL VI+ DALDYLSP+YLNKT+ ELA++  DG V+F G P
Sbjct: 149 LPYRAKSFSL-VIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLP 195

[Close]

BLAST of MC04g0405 vs. TAIR 10
Match: AT5G65810.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 3.3e-10
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   LPYRVKSFSLVVIILDALDYLSPRYLNKTLLELAKL-FDGAVIFVGKP 48
           LPYR KSFSL VI+ DALDYLSPRYLNKT+ ELA++  DG V+  G P
Sbjct: 146 LPYRSKSFSL-VIVSDALDYLSPRYLNKTVPELARVASDGVVLLAGNP 192

The following BLAST results are available for this feature:

BLAST of MC04g0405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Y6	2.1e-09	68.75	Probable pectin methylesterase CGR2 OS=Arabidopsis thaliana OX=3702 GN=CGR2 PE=2...	[more]
Q0WPN7	4.6e-09	68.75	Probable pectin methylesterase CGR3 OS=Arabidopsis thaliana OX=3702 GN=CGR3 PE=2...	[more]

BLAST of MC04g0405 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0760954.1	1.74e-12	72.92	hypothetical protein [Gossypium trilobum]	[more]
KAE8671485.1	2.08e-12	72.92	Pentatricopeptide repeat (PPR) superfamily protein [Hibiscus syriacus]	[more]
MBA0760953.1	2.89e-12	72.92	hypothetical protein [Gossypium trilobum]	[more]
XP_024923413.1	5.82e-12	72.92	uncharacterized protein At3g49720-like, partial [Ziziphus jujuba]	[more]
TYG75493.1	8.09e-12	70.83	hypothetical protein ES288_D03G035800v1 [Gossypium darwinii]	[more]

BLAST of MC04g0405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9DK63	8.45e-13	72.92	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023664 PE=4 SV=1	[more]
A0A6A2XX73	1.00e-12	72.92	Pentatricopeptide repeat (PPR) superfamily protein OS=Hibiscus syriacus OX=10633...	[more]
A0A7J9DJQ7	1.40e-12	72.92	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023664 PE=4 SV=1	[more]
A0A2P2JEP8	1.40e-12	72.92	Uncharacterized protein At3g49720-like OS=Rhizophora mucronata OX=61149 PE=4 SV=...	[more]
A0A6P6FNU3	2.82e-12	72.92	uncharacterized protein At3g49720-like OS=Ziziphus jujuba OX=326968 GN=LOC112489...	[more]

BLAST of MC04g0405 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49720.1	1.5e-10	68.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G49720.2	1.5e-10	68.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G65810.1	3.3e-10	68.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044689	Pectin methyltransferase CGR2/3	PANTHER	PTHR34208	S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 1..47
None	No IPR available	PANTHER	PTHR34208:SF10	PECTIN METHYLESTERASE CGR3-RELATED	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0405.1	MC04g0405.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045488	pectin metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008168	methyltransferase activity