MC03g_new0313 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g_new0313
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC03: 13546631 .. 13547315 (+)
RNA-Seq ExpressionMC03g_new0313
SyntenyMC03g_new0313
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGAATTTATCCCTATTGGTTTAACTAGAAAAAACAAATTGTAATCCTAATAGAAATGAGAGACAGAGGGTCTATATAAATCCAAAAGGGTTAACCAAAAGCTCACACTCATCGCAAAGAAAGCCAAATTCAGAAATGGCCACGCCGGTAAGACCCAACCCGAAACGCCCAGAAACTTCCGGCGGATCATCGCCGGCGGCGCTGACCCGATTCTGTGCGATTGCGCCGCCTCGCCACGGCGGCGGTTCGAGAGCCCAAATTCAAATTACTCTGCACACCATCTATGAAGACGAGACGGAGACGAGCAAGAGCCAAGAAAACGACGTCGCAGAGCGGCGCACCAAAATCTGCCGCCGCCATTATTGTACTTATAATCGGAAGAAAGCTCCGTCTTTCTCTTCCATCCTTGAAATGTTCTTAATTAGTTAATTAATCAATTCAAATTTAGAACCCCCCACCCCTTCAATAATTTTGTTCCTCTAATTTTCTATTTTTCTTCAGCGCTATTAATGGCGTCCATCTTCGCTTTTGGGAGGTTCATTAAAACTGTTAATCTTTTTTGCTCTTTTTTTCTTTCTCTCTAATTTTTCCTTCTTCTCCTAACTTTTGTGTCATTTTTTACCATATTATTAGATGTTATGTTATTATGATTATTTTTAGCTATAATTACAAGTTTGGATCCATC

mRNA sequence

ATGGCCACGCCGGTAAGACCCAACCCGAAACGCCCAGAAACTTCCGGCGGATCATCGCCGGCGGCGCTGACCCGATTCTGTGCGATTGCGCCGCCTCGCCACGGCGGCGGTTCGAGAGCCCAAATTCAAATTACTCTGCACACCATCTATGAAGACGAGACGGAGACGAGCAAGAGCCAAGAAAACGACGTCGCAGAGCGGCGCACCAAAATCTGCCGCCGCCATTATTGTACTTATAATCGGAAGAAAGCTCCGTCTTTCTCTTCCATCCTTGAAATGTTCTTAATTAGTTAA

Coding sequence (CDS)

ATGGCCACGCCGGTAAGACCCAACCCGAAACGCCCAGAAACTTCCGGCGGATCATCGCCGGCGGCGCTGACCCGATTCTGTGCGATTGCGCCGCCTCGCCACGGCGGCGGTTCGAGAGCCCAAATTCAAATTACTCTGCACACCATCTATGAAGACGAGACGGAGACGAGCAAGAGCCAAGAAAACGACGTCGCAGAGCGGCGCACCAAAATCTGCCGCCGCCATTATTGTACTTATAATCGGAAGAAAGCTCCGTCTTTCTCTTCCATCCTTGAAATGTTCTTAATTAGTTAA

Protein sequence

MATPVRPNPKRPETSGGSSPAALTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQENDVAERRTKICRRHYCTYNRKKAPSFSSILEMFLIS
Homology
[Close]
BLAST of MC03g_new0313 vs. NCBI nr
Match: KAG6583881.1 (hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 1.73e-12
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 4  PVRPNPKRPETSGGSSPAALTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQEND 63
          P+ PNP+   +SG +SP  LTRF AIAPPR GG SR QIQ+TL TIYEDE+E      + 
Sbjct: 22 PIAPNPR---SSGQASPP-LTRFSAIAPPRSGGISRTQIQVTLQTIYEDESE------DR 81

Query: 64 VAERRTKICRRHYCTYNRKKAPSFSS 89
          +  RR    RR +C Y+RK  PSFSS
Sbjct: 82 MCRRRR---RRRHC-YDRK--PSFSS 91

[Close]
BLAST of MC03g_new0313 vs. NCBI nr
Match: KAA0054012.1 (hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK20698.1 hypothetical protein E5676_scaffold480G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 50.8 bits (120), Expect = 7.81e-06
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 23 LTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQ 60
          LTRF AI PPR    SR QIQITL+TIYE+ETE    Q
Sbjct: 20 LTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQ 57

[Close]
BLAST of MC03g_new0313 vs. NCBI nr
Match: KAE8653296.1 (hypothetical protein Csa_023338 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 1.42e-05
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 23 LTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQ 60
          LTRF AIAPPR    SR  IQITL+TIYE+ETE    Q
Sbjct: 31 LTRFSAIAPPRFSCASRPHIQITLYTIYEEETEVKICQ 68

[Close]
BLAST of MC03g_new0313 vs. ExPASy TrEMBL
Match: A0A5D3DAX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00920 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.78e-06
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 23 LTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQ 60
          LTRF AI PPR    SR QIQITL+TIYE+ETE    Q
Sbjct: 20 LTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKFCQ 57

[Close]
BLAST of MC03g_new0313 vs. ExPASy TrEMBL
Match: A0A0A0M102 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.23e-06
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 23 LTRFCAIAPPRHGGGSRAQIQITLHTIYEDETETSKSQ 60
          LTRF AIAPPR    SR  IQITL+TIYE+ETE    Q
Sbjct: 19 LTRFSAIAPPRFSCASRPHIQITLYTIYEEETEVKICQ 56

The following BLAST results are available for this feature:
BLAST of MC03g_new0313 vs.
Match NameE-valueIdentityDescription
BLAST of MC03g_new0313 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583881.11.73e-1254.65hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054012.17.81e-0665.79hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK2069... [more]
KAE8653296.11.42e-0565.79hypothetical protein Csa_023338 [Cucumis sativus][more]
BLAST of MC03g_new0313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DAX83.78e-0665.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0M1025.23e-0665.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1[more]
BLAST of MC03g_new0313 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g_new0313.1MC03g_new0313.1mRNA