MC03g0227 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0227
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC03: 5710683 .. 5711015 (-)
RNA-Seq Expression	MC03g0227
Synteny	MC03g0227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACCGGTTCGTCAAAGGGCTTTGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTCCGCTTTACCATGATAGAGGATGTGATGTTAACGGTTCCACAAGTTTACACATGGGCATTGACTTGGTGGTTATGCAAGGTGTGTGTGGTGGAAGTTATGTCGATGGCTGAAGAACTTCCAAGTTAGTCAAGTA

mRNA sequence

AGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACCGGTTCGTCAAAGGGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTCCGCTTTACCATGATAGAGGATGTGATGTTAACGGTTCCACAAGTTTACACAGGCATTGACTTGGTGGTTATGCAAGGTGTGTGGAAGTTATGTCGATGGCTGAAGAACTTCCAAGTTAGTCAAGTA

Coding sequence (CDS)

AGCAATTGGAAGAAGAAGAAAGACTCCGTACAAAAGAAAGCTTGTTGCTGGGGATGCGGACAGTCTGGACACATGAAGAAAGATTGTCCCAACCGGTTCGTCAAAGGGGGCGGGATGCTGACAATGTTTCTCTCATCAGGGGAGACGATGATCAGTTCCTTTGAAGAGAGAGAGAATTCATCCTCATGGTATGTCCGCTTTACCATGATAGAGGATGTGATGTTAACGGTTCCACAAGTTTACACAGGCATTGACTTGGTGGTTATGCAAGGTGTGTGGAAGTTATGTCGATGGCTGAAGAACTTCCAAGTTAGTCAAGTA

Protein sequence

SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKGGGMLTMFLSSGETMISSFEERENSSSWYVRFTMIEDVMLTVPQVYTGIDLVVMQGVWKLCRWLKNFQVSQV

Homology

[Close]

BLAST of MC03g0227 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 1.01e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG 36
           SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG
Sbjct: 524 SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG 559

[Close]

BLAST of MC03g0227 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.90e-17
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 1   SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG 36
           SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG
Sbjct: 524 SNWKKKKDSVQKKACCWGCGQSGHMKKDCPNRFVKG 559

[Close]

BLAST of MC03g0227 vs. ExPASy TrEMBL
Match: A0A6P9EJZ4 (uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.91e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0


Query: 5   KKKDSVQKKACCWGCGQSGHMKKDCP 30
           KKK+S++ K  CWGCGQSGH+KK+CP
Sbjct: 133 KKKNSMKMKVVCWGCGQSGHVKKNCP 158

The following BLAST results are available for this feature:

BLAST of MC03g0227 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	1.01e-16	100.00	uncharacterized protein LOC111010521 [Momordica charantia]	[more]

BLAST of MC03g0227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	4.90e-17	100.00	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6P9EJZ4	4.91e-04	69.23	uncharacterized protein LOC118346128 OS=Juglans regia OX=51240 GN=LOC118346128 P...	[more]

BLAST of MC03g0227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 15..31 e-value: 0.0033 score: 26.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 16..31 score: 10.855963
None	No IPR available	GENE3D	4.10.60.10		coord: 7..60 e-value: 1.3E-5 score: 27.3
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 6..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0227.1	MC03g0227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding