MC03g0119 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0119
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	MC03: 1886499 .. 1889652 (-)
RNA-Seq Expression	MC03g0119
Synteny	MC03g0119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAATTTGCAATTTATTTTTAAAATTACATTATTTATGAAAATGCCCCAAATTTCTCTCATAGATTATCCCAAAATTTTTAGGGGGTTTATTTGAGTTTTTAAATTGGGAAAAAAAAGCAGAAATTAAGAAAATAAAAGTAAAACCCTCTAATACATGAGGTCATTACATCATCATCGTCTAAACCCTAGCCACCACCTGAATCTCTCTCCCTCCTCTTCGTGTGTAGCAGCCACCTCCGAATCTTCCTCTCCCCTCTCCGACGATATATCCACGACGGCCGGCGACCCACCAAGCCCGGGCGGCTCTCCTCCCCACGGCGGCAACGTGAGTCGTAGATTGGGTAACCGCGGCTCCTCTCAAAACCCTGACGGCCGGCGACGCCCCGACGCGAGCTTCTCCTCCGGCTGCGCATCTTGGTAGGTGACGGGCGGCGGCGCAATCCTCCGGCAACGACCCGGGACGACGAGTATTCCCCCTCCCCCGGCGGCACAAGATCTGTAGCACCCATCCGAGAGGCGGCGGCGAAACCCCGAGGCCAGGCGTAAGACTCACGAGCCGATCTCTCCCCTATAAGACCCTTAGTAAGTAGTCCTTGTGGTGGGTGCTTGCTTGTATTTTAGTTTATATTATGTATATGTGACTTCAAGTTCTGAATAGTTGATTTTGGAATGAAGCATGAGTTGACTATGTGTTCTGTTATAGGTTGGTACTATGTTCAAAGTTATGCTTTTATGTTGTCACTGAGTTGCAAGTGCATTGTATGCTCACTATGATTATTGAAGCATGTTGCTGCTTTGAGATTATTAGGCTGTCTGTATTATGTGCTTATGTAACATGTTGGAATATTGTGAGTTGAATGATTTTGGCTTGGTCATGGGTTCATGACTTCATGTTGTAGGATTTGGACTGTGAGTTCTGGAATTAGTGTGGACAAGTTGAATTAAGTCGGGCGAATATCAGGAATTATTTGGACGTTAGTTCAGTTTCATGTTTCTGAAAACCAAAGTCATGTCATCGGTTCCAATTTATGTGCCTGCAGCTGTGTTAAGTCTCAGAGAGTGATATTTCATTTCTTAGGAGTTGGTGGAGAAGAGCTTTCGAGTTTTTTGCTCTGTTGGTTTTGTAGAGTGTTGGCTTATTTTTTCTTATGTGGTCAAAATTTTGGTTTGTTTTGTAGACTTCTGGTTTAGTTTTTTCTAATATTGTGTCAATTTATTTACCCCTTTGTTTAATAGAGATGCTGATTGTGTTTGGTTTTCCATTTTTTTTTCTAGCAATGGAACATGGATCGTTCTCAGATGAGAGCAAATCGACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACCTTGAATCAAGAGTAGGAGCTCTTATTCAGTTGTTTTTTAATGAATAATTTTAACTGTTTACAAGACGTGTCAAAGAATTTGCCGTTTAGAAATTAATTATTCCAAAAGTCACTGGCTTCTATTAGTTTCATGACATTAATAATTAATTATGATATAGATTTTTCATTCTTGGATAACTCATCCGGCATAAATTTATGTACTTCGTTCACCCATTGTATGTGTTAATATTGGTTTCTCTCGCTGTCCATTCATAAGAGTTATTTCTAATGTTATCACATACATTTTTTCCTTTTCAAGCAAGAGGAATCGACGGTTATGTTGTCCTTTCTTTTCCCTAAAAGAGCTAGTTGATTGTTATTATATTCTAATATTATATCTGATATACTTTTAAATTACTTGCAATATCGTCTTGCAGTCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGTGTTAATATCAGAGTCCAAACAACAGGTAATTTTTCTGAGGTATTCAGATTCTCTAAAGTACAGACCAGTTCCCATTATTTAGGACATTTTTCTGATACTTAGATTTGTTTATCTTGCCTGGTTTCTTCTCTTTATATTCATCGAATATATGCATTCATGAGATGGATAGTCTATGGGCGTATGCAGGGTGTGATCCTACAAAGAAAATCTTTCGATTATTATTATTTCTTCTTTTGAGAAACGAACTGTATATAAAAGATTTAGTTACCTCCCTAAAATTTGAACTGTGATGATTAAATAGGCATGAGTTGATTTGGCATAACATAATAGGAAAATAGTAGAAGAAAGTTAAGTACACAATTGGATAGAGTAAAGTGGTACGATATATAAAAGAGTTTTGATATGCTGCTTTAAAAAGATATATGTTGTATATACCACTTTATTTTATTCAATTATCCACTTGTTCCCGTCAAGTGCCAAATCAACTGTTGTTTGTCCTAAAGGCATGTTGCACTATTATTTAACCTTCAAAATATCATTTGTTTCAATTGCCCCCAAGGGGTAGTCGTTGGCAAGTATTTGGGATCTCTTGATCATACTAGCTTTTAGAGGTCTCAGTTCGAACTTTCTGGTGAGCTTAATACCAAAAACTCTTGATGTCTTCCGGGTCCGGGCCTTGGGGCAGTTGTGAGTGTCCTTGAGTATAGGAGAAAAAAGCTATGGCTCGTTATCAAAAATATCACTTGTTTCAATTGTGAAGTAAAATCTAACAAGTTCACCTAAGTTGTTAGAGGTCTAGATAGTGTTGTCCAAAATGAATGCAAAGATATTGATTACTAGGAAAAAGCAAAGCACATGGAAATGGCAGGGCCTATGTATCTGTTGAAGTGACTACGCATTAGAATTAGAATTAGAATTAGCATTATAATTATAATTACTGCTGATTCTGAGGTGTGGGCTTTTGAATCTTGATGGAACGTGGCAGGTGATTCTGCAAGAGAGGTTTTGAAAGATTCGTGCCAGAACTTGATGGTGGTGTGCCAGCACGTGAGGAACACGTTTGACAAATCTGTTCTTGATTTCAAACTCACCAAGCCTGTTGGAGACATTAATATCAAATAAGTTTCCAATTGATTTATTTTAATTGGATGGCCTTCTGTCACGAATTCGCTTGATTCTATATTCTATGATTTGAAATATTGGAAATGGTTTCGAGTTCTTTATCTCTTTTGGAACGAGAAAGATTTGGAATGATCTTAACTGGATTCTGATTCTCTGTCTGAATGATCAATGGAAAGGAAAAATGTTAGGTGTACT

mRNA sequence

CTTAAATTTGCAATTTATTTTTAAAATTACATTATTTATGAAAATGCCCCAAATTTCTCTCATAGATTATCCCAAAATTTTTAGGGGGTTTATTTGAGTTTTTAAATTGGGAAAAAAAAGCAGAAATTAAGAAAATAAAAGTAAAACCCTCTAATACATGAGGTCATTACATCATCATCGTCTAAACCCTAGCCACCACCTGAATCTCTCTCCCTCCTCTTCGTGTGTAGCAGCCACCTCCGAATCTTCCTCTCCCCTCTCCGACGATATATCCACGACGGCCGGCGACCCACCAAGCCCGGGCGGCTCTCCTCCCCACGGCGGCAACGTGAGTCGTAGATTGGGTAACCGCGGCTCCTCTCAAAACCCTGACGGCCGGCGACGCCCCGACGCGAGCTTCTCCTCCGGCTGCGCATCTTGGTAGGTGACGGGCGGCGGCGCAATCCTCCGGCAACGACCCGGGACGACGAGTATTCCCCCTCCCCCGGCGGCACAAGATCTGTAGCACCCATCCGAGAGGCGGCGGCGAAACCCCGAGGCCAGGCGTAAGACTCACGAGCCGATCTCTCCCCTATAAGACCCTTACAATGGAACATGGATCGTTCTCAGATGAGAGCAAATCGACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACCTTGAATCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGTGTTAATATCAGAGTCCAAACAACAGGTGATTCTGCAAGAGAGGTTTTGAAAGATTCGTGCCAGAACTTGATGGTGGTGTGCCAGCACGTGAGGAACACGTTTGACAAATCTGTTCTTGATTTCAAACTCACCAAGCCTGTTGGAGACATTAATATCAAATAAGTTTCCAATTGATTTATTTTAATTGGATGGCCTTCTGTCACGAATTCGCTTGATTCTATATTCTATGATTTGAAATATTGGAAATGGTTTCGAGTTCTTTATCTCTTTTGGAACGAGAAAGATTTGGAATGATCTTAACTGGATTCTGATTCTCTGTCTGAATGATCAATGGAAAGGAAAAATGTTAGGTGTACT

Coding sequence (CDS)

ATGGAACATGGATCGTTCTCAGATGAGAGCAAATCGACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATACACCTTGAATCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGTGTTAATATCAGAGTCCAAACAACAGGTGATTCTGCAAGAGAGGTTTTGAAAGATTCGTGCCAGAACTTGATGGTGGTGTGCCAGCACGTGAGGAACACGTTTGACAAATCTGTTCTTGATTTCAAACTCACCAAGCCTGTTGGAGACATTAATATCAAATAA

Protein sequence

MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK

Homology

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BLAST of MC03g0119 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 43/91 (47.25%), Postives = 61/91 (67.03%), Query Frame = 0


Query: 7   SDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDSARE 66
           ++ES  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G  A E
Sbjct: 19  NEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVE 78

Query: 67  VLKDSCQNLMVVCQHVRNTFDKSVLDFKLTK 97
             +     L+ VCQHV NTF+ S+ ++K  K
Sbjct: 79  PFRRGLNELVDVCQHVLNTFETSIKEYKEQK 109

[Close]

BLAST of MC03g0119 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-16
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 7   SDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDSARE 66
           +DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G  A E
Sbjct: 18  ADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASE 77

Query: 67  VLKDSCQNLMVVCQHVRNTFDKSVLDFK 94
            L++   NL  VC+HV  TF+  + +FK
Sbjct: 78  PLRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]

BLAST of MC03g0119 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-16
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + +D    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-SAREVLKDSCQNLMVVCQHVRNTFDKSVLDFK 94
              A E  +     LM VCQHV + F+ S+ D+K
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

[Close]

BLAST of MC03g0119 vs. ExPASy Swiss-Prot
Match: P28000 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC19 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-16
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 8   DESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-SAREV 67
           D + ++F + +EDHTL NALRY + ++P V FCGYSIPHPS+N +NIR+QT G+ +A + 
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116

Query: 68  LKDSCQNLMVVCQHVRNTFDKSV 90
           L+   ++LM +C  V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139

[Close]

BLAST of MC03g0119 vs. ExPASy Swiss-Prot
Match: P97304 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN=Polr1d PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-15
Identity = 40/97 (41.24%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + +D    TF + +EDHTL N LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-SAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTK 97
              A E  +     L+ VCQHV   F+ S+ D+K  K
Sbjct: 89  ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKK 125

[Close]

BLAST of MC03g0119 vs. NCBI nr
Match: XP_022150895.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia])

HSP 1 Score: 214 bits (545), Expect = 4.36e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 205 bits (522), Expect = 1.41e-66
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLD KLTKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. NCBI nr
Match: XP_022948356.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata] >XP_022998825.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita maxima] >KAG6607286.1 DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200 bits (509), Expect = 1.36e-64
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLM VCQHVRNT DK+VLD KLTKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199 bits (506), Expect = 3.89e-64
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLM VCQHVRNT DK+VLD KLTKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. NCBI nr
Match: KAG7036964.1 (DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (509), Expect = 7.55e-64
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 54  MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 113

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLM VCQHVRNT DK+VLD KLTKPVGDINIK
Sbjct: 114 DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 157

[Close]

BLAST of MC03g0119 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 2.11e-70
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. ExPASy TrEMBL
Match: A0A6J1KDK3 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661 GN=LOC111493371 PE=3 SV=1)

HSP 1 Score: 200 bits (509), Expect = 6.56e-65
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLM VCQHVRNT DK+VLD KLTKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. ExPASy TrEMBL
Match: A0A6J1G901 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=3662 GN=LOC111452057 PE=3 SV=1)

HSP 1 Score: 200 bits (509), Expect = 6.56e-65
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DESKSTFSMADEDHTLAN++RYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDESKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLM VCQHVRNT DK+VLD KLTKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKPVGDINIK 104

[Close]

BLAST of MC03g0119 vs. ExPASy TrEMBL
Match: A0A0A0LUT5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010 PE=3 SV=1)

HSP 1 Score: 197 bits (500), Expect = 1.55e-63
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKPVGDINIK 104
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLD KLT PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]

BLAST of MC03g0119 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 196 bits (499), Expect = 2.50e-63
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKP----VGDINIK 104
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLDF LTKP    VGDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of MC03g0119 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 130.2 bits (326), Expect = 9.7e-31
Identity = 59/93 (63.44%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSF++ S ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFK 94
          D AREV KD+CQ LM + +HVR+ FDK+V ++K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of MC03g0119 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 130.2 bits (326), Expect = 9.7e-31
Identity = 59/93 (63.44%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGSF++ S ++F++++EDHTLANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFK 94
          D AREV KD+CQ LM + +HVR+ FDK+V ++K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93

[Close]

BLAST of MC03g0119 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 84.0 bits (206), Expect = 8.0e-17
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFK 94
           PRVT   Y+IPHPS  +VNIRVQTTGD AREV KD+CQ LM + +HVR+ FDK+V ++K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]

BLAST of MC03g0119 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 25/82 (30.49%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 12  STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDSA-REVLKDS 71
           ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT  S+  +    +
Sbjct: 31  ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90

Query: 72  CQNLMVVCQHVRNTFDKSVLDF 93
             +L     +++N F+  V  F
Sbjct: 91  INDLDKELDYLKNQFEAEVAKF 112

[Close]

BLAST of MC03g0119 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-05
Identity = 17/44 (38.64%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 12 STFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIR 56
          ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR 74

The following BLAST results are available for this feature:

BLAST of MC03g0119 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	2.1e-17	47.25	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
Q6DRI4	5.1e-16	46.59	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]
P0DPB6	6.6e-16	42.55	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
P28000	8.6e-16	45.78	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae...	[more]
P97304	1.9e-15	41.24	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN...	[more]

BLAST of MC03g0119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150895.1	4.36e-70	100.00	DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]	[more]
XP_038893936.1	1.41e-66	94.23	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_022948356.1	1.36e-64	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita moschata] >XP_02...	[more]
XP_023522054.1	3.89e-64	90.38	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp....	[more]
KAG7036964.1	7.55e-64	91.35	DNA-directed RNA polymerases I and III subunit RPAC2, partial [Cucurbita argyros...	[more]

BLAST of MC03g0119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9Q8	2.11e-70	100.00	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3...	[more]
A0A6J1KDK3	6.56e-65	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1G901	6.56e-65	91.35	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucurbita moschata OX=36...	[more]
A0A0A0LUT5	1.55e-63	90.38	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G095010...	[more]
A0A0A0LV21	2.50e-63	89.81	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]

BLAST of MC03g0119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	9.7e-31	63.44	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	9.7e-31	63.44	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	8.0e-17	64.41	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	1.8e-08	30.49	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	4.1e-05	38.64	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 12..83 e-value: 3.7E-29 score: 100.3
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 5..102 e-value: 4.2E-34 score: 118.4
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 8..92
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..104
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 1..104
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 2..85 e-value: 5.80499E-43 score: 133.126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0119.1	MC03g0119.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity