MC02g0878 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0878
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transmembrane protein
Location	MC02: 6954824 .. 6955111 (-)
RNA-Seq Expression	MC02g0878
Synteny	MC02g0878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCCGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGC

mRNA sequence

ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCCGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGC

Coding sequence (CDS)

ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCCGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGC

Protein sequence

MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG

Homology

[Close]

BLAST of MC02g0878 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 1.26e-45
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVRCLSSMDSS  RYY C CNRG WK  +CRCGHG
Sbjct: 61 VLVRCLSSMDSSP-RYYACPCNRG-WKM-NCRCGHG 93

[Close]

BLAST of MC02g0878 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (375), Expect = 2.03e-44
Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP P+L+LLAVV ILIGLSSLFPSE IDFSEFQINWPLLAVP+ +L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVRCLS++DSSS RYY C CNRG WK   CRCG G
Sbjct: 61 VLVRCLSTVDSSS-RYYACPCNRG-WKM-QCRCGRG 93

[Close]

BLAST of MC02g0878 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 2.97e-44
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVRCL+SMDSS  RYY C C+RG WK  HCRCG G
Sbjct: 61 VLVRCLASMDSSP-RYYACPCDRG-WKM-HCRCGRG 93

[Close]

BLAST of MC02g0878 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (331), Expect = 1.44e-37
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYG  P PS PLP PILVLL VV ILIGLSSLF SE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVR LSS+DSSS     CAC+RG WK  HCRC HG
Sbjct: 61 VLVRFLSSVDSSSRH---CACDRG-WKM-HCRCRHG 91

[Close]

BLAST of MC02g0878 vs. NCBI nr
Match: KMT01460.1 (hypothetical protein BVRB_9g214670 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.1 bits (157), Expect = 5.31e-11
Identity = 39/91 (42.86%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 4   CYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPS-EGIDFSEFQINWPLLAVPVTILVL 63
           C G T RP   LPYP+L++L VVSI +G+   F S E  + +EF INW LL  P+ ++  
Sbjct: 17  CDGLTLRP---LPYPVLLILLVVSIFLGIKFYFVSDEAAETTEFHINWMLLLTPILLIFA 76

Query: 64  VRCLSSMDSSSSRYYGCACNRGGWKTTHCRC 93
           VR LSS      R YG  C    W    C C
Sbjct: 77  VRLLSSFQGRRRRSYG-GCTTERWPPVSCCC 103

[Close]

BLAST of MC02g0878 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 6.10e-46
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVRCLSSMDSS  RYY C CNRG WK  +CRCGHG
Sbjct: 61 VLVRCLSSMDSSP-RYYACPCNRG-WKM-NCRCGHG 93

[Close]

BLAST of MC02g0878 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 1.44e-44
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHG 96
          VLVRCL+SMDSS  RYY C C+RG WK  HCRCG G
Sbjct: 61 VLVRCLASMDSSP-RYYACPCDRG-WKM-HCRCGRG 93

[Close]

BLAST of MC02g0878 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.04e-11
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3  YCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGI-DFSEFQINWPLLAVPVTILV 62
          YC  C  RPS+P+PY +L+ LA+  +L+ LSSL   E + + +E  + W +L   + +LV
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLSSMDSSSSRYYGCACNR 83
          +VRCLSS DS    +Y C C R
Sbjct: 70 VVRCLSSTDSCRQPHY-CGCGR 90

[Close]

BLAST of MC02g0878 vs. ExPASy TrEMBL
Match: A0A2C9UZU5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.44e-11
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 14 PLPYPILVLLAVVSILIGLSSLFPSEGI-DFSEFQINWPLLAVPVTILVLVRCLSSMDSS 72
          PLPYP+L++LAV+SI +G+S  F  E I + +E QINW LLA P+ +L LVR LSSM++S
Sbjct: 21 PLPYPVLLILAVISIFLGISWYFSYEEIAETAEMQINWLLLATPLVLLFLVRWLSSMENS 80

[Close]

BLAST of MC02g0878 vs. ExPASy TrEMBL
Match: A0A6J1C2N0 (uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007895 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.45e-10
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 14 PLPYPILVLLAVVSILIGLSSLFPSEG-IDFSEFQINWPLLAVPVTILVLVRCLSSMDSS 72
          PLPYP+L+LL VV + +G S  F  E  ++ +E QINW L A PV ++VLVRCLSS+D S
Sbjct: 20 PLPYPVLLLLGVVFVFLGASWWFSYESAVEAAEEQINWLLFATPVLLIVLVRCLSSVDPS 79

[Close]

BLAST of MC02g0878 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 13 APLPYPILVLLAVVSILIGLSSLFPS--EGIDFSEFQINWPLLAVPVTILVLVRCLSSMD 72
          +PLPYP+L++LAV S+ + LSS + S  E  + +E QIN+ LL +P+ ++VLVR LSSM+
Sbjct: 17 SPLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSME 76

[Close]

BLAST of MC02g0878 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 16 PYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLL-AVPVTILVLVRCLSSMDSSS 75
          P P++V++ V  +L+ LSS+   E  +   E  ++W LL AVP+ +L  VRCLS +++S 
Sbjct: 17 PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLFAVRCLSCLETSK 76

Query: 76 SRYYGCACNRGGWKTTHCRC 94
             Y C C R  W+   C C
Sbjct: 77 RSTYYCPCGR--WR---CVC 91

The following BLAST results are available for this feature:

BLAST of MC02g0878 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g0878 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045689.1	1.26e-45	82.29	hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995...	[more]
KAG6571042.1	2.03e-44	79.17	hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN61893.1	2.97e-44	80.21	hypothetical protein Csa_006600 [Cucumis sativus]	[more]
KAG6605007.1	1.44e-37	76.04	hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KMT01460.1	5.31e-11	42.86	hypothetical protein BVRB_9g214670 [Beta vulgaris subsp. vulgaris]	[more]

BLAST of MC02g0878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJW1	6.10e-46	82.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJB6	1.44e-44	80.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1	[more]
A0A1R3JDI7	3.04e-11	42.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1	[more]
A0A2C9UZU5	6.44e-11	56.67	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=...	[more]
A0A6J1C2N0	2.45e-10	55.00	uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of MC02g0878 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21180.1	3.1e-07	49.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21185.1	2.0e-06	37.50	unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 1..95
None	No IPR available	PANTHER	PTHR33306:SF32	SUBFAMILY NOT NAMED	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g0878.1	MC02g0878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane