MC01g_new0227 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0227
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 9068388 .. 9069119 (+)
RNA-Seq Expression	MC01g_new0227
Synteny	MC01g_new0227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATGTATGCATGTATATGAGCAATGGTAACCAAATTTTCTCAGATGGAAAAGAAAATTCAAGAAAATTTCCTGGAAAGTTCTCTCTTGAAATTAAAACACTAATGTAATCCAATCAATCAAAACCCTCATTAGGAATTTTGGAAAAAAAATATACATATAAGTGAAATATTCATTAGTTATAATTTCTTGAACAAAATCTCAATATATTTACATCTGGAAGATCATTTGAAACGTATAATAACCCTCCATTTCCAACAGTGCAATCAAGAACAAAAATCACCCAAAAAAAAAAAGAATATATGAAGAAAAAGAAGAAGAAATTTGATGGAATTATTTTCCAATAATAATTATCTTCTTCTTCTATTAATTTACTTATCTGTTGTGGAGAGGATTTGGGCCAGTGTAGACTCGTCTCTTCTGAGCAGCAAACACGGCGGCGCCGCGGTCGGATTTTGCAGCGGCGTGGCGCTTGGGGCGGACCACGGCGGCGGCGGAGGTGGGTCTTTCTCTTTCCTTGGAGGGAAGAAGAAGAAGAAAAAGAATAAGGAAAAAAAACAAAGTTGCAAGCTCTGTTAAGTTCTTCAGCCTCATCTCTCTCTCTCCCTCTCTCTAAAGTTGATGCCTTTGGGTTAATGGGTCTTTATCTTTTCAGTTGAAATCAAAACCATCCATTTTCTCTCTCTAGTTTAAGAGATTTCAAGGTTTTTTTCTCTCTCTCTCTAGAATTG

mRNA sequence

ATGGAATTATTTTCCAATAATAATTATCTTCTTCTTCTATTAATTTACTTATCTGTTGTGGAGAGGATTTGGGCCAGTGTAGACTCGTCTCTTCTGAGCAGCAAACACGGCGGCGCCGCGGTCGGATTTTGCAGCGGCGTGGCGCTTGGGGCGGACCACGGCGGCGGCGGAGGTGGGTCTTTCTCTTTCCTTGGAGGGAAGAAGAAGAAGAAAAAGAATAAGGAAAAAAAACAAAGTTGCAAGCTCTGTTAA

Coding sequence (CDS)

ATGGAATTATTTTCCAATAATAATTATCTTCTTCTTCTATTAATTTACTTATCTGTTGTGGAGAGGATTTGGGCCAGTGTAGACTCGTCTCTTCTGAGCAGCAAACACGGCGGCGCCGCGGTCGGATTTTGCAGCGGCGTGGCGCTTGGGGCGGACCACGGCGGCGGCGGAGGTGGGTCTTTCTCTTTCCTTGGAGGGAAGAAGAAGAAGAAAAAGAATAAGGAAAAAAAACAAAGTTGCAAGCTCTGTTAA

Protein sequence

MELFSNNNYLLLLLIYLSVVERIWASVDSSLLSSKHGGAAVGFCSGVALGADHGGGGGGSFSFLGGKKKKKKNKEKKQSCKLC

Homology

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BLAST of MC01g_new0227 vs. NCBI nr
Match: KAG6603294.1 (hypothetical protein SDJN03_03903, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.8 bits (125), Expect = 1.21e-06
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 20 VERIWASVDSSLLSSKHGGAAVGFCSGVALGADHGGGGGGSFSFLGG----KKKKKKNKE 79
          ++RIW  VDSSLL SKHGGA +    GV  G D+GG GGG  S  GG    +  KKK K+
Sbjct: 1  MKRIWTGVDSSLLRSKHGGATI---VGVGSGVDNGGNGGGGGSSGGGIDDDRGGKKKKKK 60

Query: 80 KKQSCKL 82
          KKQ+ KL
Sbjct: 61 KKQADKL 64

The following BLAST results are available for this feature:

BLAST of MC01g_new0227 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0227 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603294.1	1.21e-06	53.73	hypothetical protein SDJN03_03903, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC01g_new0227 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC01g_new0227 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC01g_new0227.1	MC01g_new0227.1	mRNA