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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GGCGAGACCAAAATTATAATTTCAATTTTAACTTTTTAATTATAATTATTAATATAAAAACAATGGCTTTTCATAGACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCATGTTAATTTTTTTTCCAATTAAATAAAGGATAATTAATTTAATTATTATTTTTTATTTCAGTCGATAATTTCGACGAAATGTGACAAATTCAGCTCCAGATCCCCATCACCGTGGCGCTCTCGCCATTTTTATCTAATCCTTCTACTTCTTCGCAATTCTTGATTCAAAATTCATTGTTCTAACAACGCAATTCAAGTTCTCACCGAACCACCTCGCCGAATCCGAGTGGATTTCGAAGTGAAGAAGAACCGGAAGCCGAGCAAATTCGTAGTCAATCCAGGAATTTGCAGTTCGATTTCAAATGCGAAACGCGAAAAGGTGAAGTGTTTGATGAGATATATGCGAGGACTGTACTGATCATATAAGAAATTGCTATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAACGAGAAACGGCCTCCAACAAAAGGATTCTGATAGCAGACAAGAGGAGCTGAGCAAATGCTTCCCGAGCACGAATTGCAGAGGCTCAGGAATGGGAGAGAGATTTTGTTATTAATTACACGTGTTTTTCTTTTCCTCAAATTTTCAAAAAGTACATGTACAAAAGTTGAGATTTAGAGGTTTTTCCCTTCAAATTTTGCTGCTCACGAGTGATAAAAAAACTTGATATCTCGATCAAGAACTAATACCATTACC mRNA sequence ATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAA Coding sequence (CDS) ATGCAAGTACGAAACCTTTTGGCGATGGATCTTGCCGTGGTGGAAAATCGAATGGAGAAATTGACGAAATTACTGATGAAATTTCAGTGGAATTACGAGGAGGAAATTAATCCTGTAGGTCTGAAAGTTCGGCGTCGAGGGAAACATTCCATCAGTTCTGGTAATGATTACAGTGATCCGGTTGACTTGCCATGGAAAAGAGAACCGGGAAGAGTGTTTGATCCTAAAATTGATCAAGCTCGGAATCCACGAAGCTCTGTACCAGGTACTTGCAACTACTCTAAGAGATGCGGTGTGATGTCGACACGTGACTAA Protein sequence MQVRNLLAMDLAVVENRMEKLTKLLMKFQWNYEEEINPVGLKVRRRGKHSISSGNDYSDPVDLPWKREPGRVFDPKIDQARNPRSSVPGTCNYSKRCGVMSTRD
Homology
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022147610.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Momordica charantia]) HSP 1 Score: 53.9 bits (128), Expect = 1.15e-05 Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 71 E ++L++F + EEEINPV L V S+SSGND SDPVDLPWKRE Sbjct: 217 ESTDEILVEFSED-EEEINPVRLNVLPAIEERSASSENFVQSVSSGNDCSDPVDLPWKRE 276
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022987603.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita maxima]) HSP 1 Score: 49.7 bits (117), Expect = 3.52e-04 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S+SS ND + PVDLPWKRE Sbjct: 206 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 265
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_022960925.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita moschata]) HSP 1 Score: 49.7 bits (117), Expect = 3.52e-04 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S+SS ND + PVDLPWKRE Sbjct: 208 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 267
BLAST of MC01g_new0157 vs. NCBI nr
Match: KAG7023666.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 48.9 bits (115), Expect = 6.56e-04 Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S++S ND + PVDLPWKRE Sbjct: 207 ERIDEISLEFSED-EEEINPVDLNVLPITEKRSPSSKKFVRSVNSDNDSNGPVDLPWKRE 266
BLAST of MC01g_new0157 vs. NCBI nr
Match: XP_023516378.1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 48.9 bits (115), Expect = 6.57e-04 Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S++S ND + PVDLPWKRE Sbjct: 210 ERIDEISLEFSED-EEEINPVDLNVLPITEKRSPSSKKFVRSVNSDNDSNGPVDLPWKRE 269
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1D0M1 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016492 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 5.55e-06 Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 71 E ++L++F + EEEINPV L V S+SSGND SDPVDLPWKRE Sbjct: 217 ESTDEILVEFSED-EEEINPVRLNVLPAIEERSASSENFVQSVSSGNDCSDPVDLPWKRE 276
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1JJX8 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485112 PE=4 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.70e-04 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S+SS ND + PVDLPWKRE Sbjct: 206 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 265
BLAST of MC01g_new0157 vs. ExPASy TrEMBL
Match: A0A6J1HAH4 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461582 PE=4 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.71e-04 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 19 EKLTKLLMKFQWNYEEEINPVGLKV----------RRRGKHSISSGNDYSDPVDLPWKRE 78 E++ ++ ++F + EEEINPV L V ++ S+SS ND + PVDLPWKRE Sbjct: 208 ERIDEISVEFSED-EEEINPVDLNVLPITEKRSPLSKKFVRSVSSDNDSNGPVDLPWKRE 267
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022147610.1 | 1.15e-05 | 49.21 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Momordica charan... | [more] |
XP_022987603.1 | 3.52e-04 | 40.85 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita maxima... | [more] |
XP_022960925.1 | 3.52e-04 | 40.85 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita moscha... | [more] |
KAG7023666.1 | 6.56e-04 | 39.44 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial, partial [Cucurbi... | [more] |
XP_023516378.1 | 6.57e-04 | 39.44 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial [Cucurbita pepo s... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1D0M1 | 5.55e-06 | 49.21 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Momordica char... | [more] |
A0A6J1JJX8 | 1.70e-04 | 40.85 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita maxi... | [more] |
A0A6J1HAH4 | 1.71e-04 | 40.85 | CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucurbita mosc... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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